pycom09g17630

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012195
Physical Location & Seq
Reverse (-)
18173077 .. 18174504
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17630.2

Sequence Viewer

Length: 852 bp
ATGGCACTAGCCAAGGACATTAGAATGTCTACTCCTCATGACTCATGCACTCATGAGTCCCTTCAAGTTTCAGATCTTTCTGATGGATTTGTGTTTAGAGCCACATCTAATTACCAACCTGATCATCTCATTAACTTCAAAAGTGGGTACTACAACAGTGGTGAATCTTTGCTTAGTTTTGATAAAAACAAGCGGAGTTCTCAAAGCATTTACTTGAATAGCAGTACCAGCAAAGATGACTGCGATAGTGATTTGTATCATGGTAGTTATAGCCAGTGGAATCAGATGGCTGGCATCGGTGACCCAAGTCTTTCGGGCGATTTTAGTTGTTTACAGACGGCTAGCAATTACAGCAGCTCCATCCCCAACACCTCAAAAGAAGATCATGGCGATCATGAGGCTTATGGATGGTTACACTCTGAAGTATCTGATAGCTTCCAGGAACCGGACAAGCAAAAAGCGGGGTTTCACAAGCGTCCCATTACGGGAGAGAGCATGCAACCTTCAAAGAAGCAATGCACTGGTGCAACTAAGAAGCCCAAACCCAAGTCATCAACGAGTCCCTCAAAGGACCCCCAAAGTATTGCAGCCAAGAATCGAAGAGAGCGGATTAGCGAGCGGCTTAAGATATTGCAAGAACTGGTGCCCAATGGCTGCAAGGTTGATTTGGTCACCATGTTAGAGAAAGCGATCAGTTATGTTAAATTTCTTCAACTACAAGTCAAGGTGTTGGCAACCGATGAATTTTGGCCCGTTCAAGGCCGAAAAGCTCCTGATATTTCTCAAGTGAAAGAAGCCATCGATGCCATCCTCTCATCATCTCAGAGAGACACAAGTTCAAGCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

284

Amino Acids

31.39

Weight (kDa)

7.08

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66470 AT5G37800
fragaria_vesca FvH4_1g28930 FvH4_1g28930
malus_domestica MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica Prupe.3G159800_v2.0.a1
pyrus_communis pycom09g17630 pycom17g25930
rosa_chinensis RchiOBHm_Chr3g0493491
rosa_laevigata RLG00000022711
rosa_multiflora Rmu_sc0002343.1_g000071
rosa_roxburghii Rroxscaffold_6G00391560
rosa_rugosa Rorug03G0261100.1
rosa_samantha Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana Rw3G027280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 643
AccBSI CCGCTC 2 cut(s) 607, 619
AccI GTMKAC 1 cut(s) 29
AciI CCGC 4 cut(s) 193, 461, 607, 619
AcsI RAATTY 2 cut(s) 704, 743
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 2 cut(s) 149, 226
AfiI CCNNNNNNNGG 3 cut(s) 445, 485, 758
AflII CTTAAG 1 cut(s) 623
AgsI TTSAA 7 cut(s) 65, 139, 217, 507, 713, 758, 840
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 4 cut(s) 357, 435, 770, 843
AluI AGCT 4 cut(s) 357, 435, 770, 843
Alw26I GTCTC 1 cut(s) 822
AoxI GGCC 2 cut(s) 749, 760
ApeKI GCWGC 3 cut(s) 354, 587, 654
ApoI RAATTY 2 cut(s) 704, 743
AspS9I GGNCC 2 cut(s) 571, 750
AsuHPI GGTGA 3 cut(s) 173, 311, 664
AsuNHI GCTAGC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 643
BbvI GCAGC 3 cut(s) 366, 599, 641
BccI CCATC 6 cut(s) 77, 280, 368, 402, 806, 815
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 822
BfaI CTAG 2 cut(s) 8, 342
BfrI CTTAAG 1 cut(s) 623
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 355, 588, 620, 655
BlsI GCNGC 4 cut(s) 356, 589, 621, 656
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 2 cut(s) 571, 750
BmiI GGNNCC 3 cut(s) 444, 573, 645
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 2 cut(s) 303, 793
BmtI GCTAGC 1 cut(s) 345
BoxI GACNNNNGTC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 768
Bsa29I ATCGAT 1 cut(s) 801
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 485, 758
Bse1I ACTGG 3 cut(s) 274, 526, 645
Bse3DI GCAATG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 440
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 360, 413, 807
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 3 cut(s) 445, 485, 758
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 3 cut(s) 274, 526, 645
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 3 cut(s) 366, 599, 641
BshFI GGCC 2 cut(s) 751, 762
BshNI GGYRCC 1 cut(s) 643
BshVI ATCGAT 1 cut(s) 801
BsiSI CCGG 1 cut(s) 446
BslFI GGGAC 3 cut(s) 43, 462, 546
BslI CCNNNNNNNGG 3 cut(s) 445, 485, 758
BsmAI GTCTC 1 cut(s) 822
BsmFI GGGAC 3 cut(s) 43, 462, 546
BsnI GGCC 2 cut(s) 751, 762
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 5 cut(s) 73, 121, 382, 391, 690
BspACI CCGC 4 cut(s) 193, 461, 607, 619
BspANI GGCC 2 cut(s) 751, 762
BspCNI CTCAG 1 cut(s) 835
BspDI ATCGAT 1 cut(s) 801
BspHI TCATGA 3 cut(s) 37, 52, 394
BspLI GGNNCC 3 cut(s) 444, 573, 645
BspOI GCTAGC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 643
BspTI CTTAAG 1 cut(s) 623
BsrBI CCGCTC 2 cut(s) 607, 619
BsrDI GCAATG 1 cut(s) 521
BsrI ACTGG 3 cut(s) 274, 526, 645
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 5 cut(s) 73, 121, 382, 391, 690
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 595
BstAFI CTTAAG 1 cut(s) 623
BstC8I GCNNGC 4 cut(s) 292, 343, 497, 617
BstDEI CTNAG 3 cut(s) 173, 531, 822
BstEII GGTNACC 2 cut(s) 299, 670
BstF5I GGATG 3 cut(s) 360, 413, 807
BstKTI GATC 5 cut(s) 76, 124, 385, 394, 693
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 5 cut(s) 73, 121, 382, 391, 690
BstMWI GCNNNNNNNGC 3 cut(s) 228, 351, 803
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 306
BstPI GGTNACC 2 cut(s) 299, 670
BstSCI CCNGG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 3 cut(s) 366, 599, 641
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 2 cut(s) 751, 762
BsuTUI ATCGAT 1 cut(s) 801
BtsCI GGATG 3 cut(s) 360, 413, 807
BtsIMutI CAGTG 3 cut(s) 163, 281, 519
Cac8I GCNNGC 4 cut(s) 292, 343, 497, 617
CciI TCATGA 3 cut(s) 37, 52, 394
Cfr13I GGNCC 2 cut(s) 571, 750
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 148, 225
CviAII CATG 8 cut(s) 38, 45, 53, 260, 386, 395, 496, 676
CviQI GTAC 2 cut(s) 148, 225
DdeI CTNAG 3 cut(s) 173, 531, 822
DpnI GATC 5 cut(s) 75, 123, 384, 393, 692
DpnII GATC 5 cut(s) 73, 121, 382, 391, 690
Eam1104I CTCTTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 441
Eco91I GGTNACC 2 cut(s) 299, 670
EcoO109I RGGNCCY 1 cut(s) 571
EcoO65I GGTNACC 2 cut(s) 299, 670
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 8 cut(s) 41, 48, 56, 263, 389, 398, 499, 679
FaqI GGGAC 3 cut(s) 43, 462, 546
FatI CATG 8 cut(s) 37, 44, 52, 259, 385, 394, 495, 675
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 355, 588, 620, 655
FokI GGATG 3 cut(s) 347, 420, 794
Fsp4HI GCNGC 4 cut(s) 355, 588, 620, 655
FspBI CTAG 2 cut(s) 8, 342
GluI GCNGC 4 cut(s) 355, 588, 620, 655
HaeIII GGCC 2 cut(s) 751, 762
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 464
Hin1II CATG 8 cut(s) 41, 48, 56, 263, 389, 398, 499, 679
HinfI GANTC 6 cut(s) 41, 56, 164, 280, 559, 595
HpaII CCGG 1 cut(s) 446
HphI GGTGA 3 cut(s) 173, 311, 664
Hpy166II GTNNAC 2 cut(s) 30, 332
Hpy188I TCNGA 6 cut(s) 73, 82, 285, 421, 430, 825
Hpy188III TCNNGA 4 cut(s) 38, 53, 395, 773
Hpy8I GTNNAC 2 cut(s) 30, 332
HpyAV CCTTC 2 cut(s) 71, 513
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 7 cut(s) 48, 499, 519, 527, 587, 634, 657
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 351, 803
HpyF3I CTNAG 3 cut(s) 173, 531, 822
Hsp92II CATG 8 cut(s) 41, 48, 56, 263, 389, 398, 499, 679
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 73, 121, 382, 391, 690
LmnI GCTCC 2 cut(s) 362, 775
Lsp1109I GCAGC 3 cut(s) 366, 599, 641
LweI GCATC 2 cut(s) 303, 793
MaeI CTAG 2 cut(s) 8, 342
MaeIII GTNAC 3 cut(s) 299, 411, 670
MalI GATC 5 cut(s) 75, 123, 384, 393, 692
MbiI CCGCTC 2 cut(s) 607, 619
MboI GATC 5 cut(s) 73, 121, 382, 391, 690
MboII GAAGA 3 cut(s) 392, 612, 701
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 4 cut(s) 109, 346, 704, 743
MlyI GAGTC 3 cut(s) 35, 65, 568
MnlI CCTC 5 cut(s) 45, 382, 391, 574, 821
MseI TTAA 3 cut(s) 132, 624, 702
MslI CAYNNNNRTG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 228, 351, 803
NdeII GATC 5 cut(s) 73, 121, 382, 391, 690
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 8 cut(s) 41, 48, 56, 263, 389, 398, 499, 679
NlaIV GGNNCC 3 cut(s) 444, 573, 645
NmuCI GTSAC 2 cut(s) 299, 670
NspI RCATGY 1 cut(s) 499
PaeI GCATGC 1 cut(s) 499
PagI TCATGA 3 cut(s) 37, 52, 394
PfeI GAWTC 3 cut(s) 164, 280, 595
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 4 cut(s) 356, 589, 621, 656
PleI GAGTC 3 cut(s) 35, 64, 567
PpsI GAGTC 3 cut(s) 35, 64, 567
PpuMI RGGWCCY 1 cut(s) 571
PshAI GACNNNNGTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 438
PspEI GGTNACC 2 cut(s) 299, 670
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 3 cut(s) 444, 573, 645
PspPI GGNCC 2 cut(s) 571, 750
PspPPI RGGWCCY 1 cut(s) 571
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 149, 226
RsaNI GTAC 2 cut(s) 148, 225
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 3 cut(s) 132, 624, 702
SatI GCNGC 4 cut(s) 355, 588, 620, 655
Sau3AI GATC 5 cut(s) 73, 121, 382, 391, 690
Sau96I GGNCC 2 cut(s) 571, 750
SchI GAGTC 3 cut(s) 35, 65, 568
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 648
SetI ASST 9 cut(s) 121, 359, 374, 437, 505, 663, 729, 772, 845
SfaNI GCATC 2 cut(s) 303, 793
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 623, 783
SmoI CTYRAG 2 cut(s) 623, 783
SphI GCATGC 1 cut(s) 499
Sse9I AATT 4 cut(s) 109, 346, 704, 743
SsiI CCGC 4 cut(s) 193, 461, 607, 619
SspMI CTAG 2 cut(s) 8, 342
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 598, 801
TasI AATT 4 cut(s) 109, 346, 704, 743
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 3 cut(s) 164, 280, 595
Tru1I TTAA 3 cut(s) 132, 624, 702
Tru9I TTAA 3 cut(s) 132, 624, 702
TscAI CASTG 3 cut(s) 163, 281, 526
TseFI GTSAC 2 cut(s) 299, 670
TseI GCWGC 3 cut(s) 354, 587, 654
Tsp45I GTSAC 2 cut(s) 299, 670
TspDTI ATGAA 1 cut(s) 756
TspRI CASTG 3 cut(s) 163, 281, 526
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 2 cut(s) 704, 743
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 2 cut(s) 8, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.