Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012195

Physical Location & Seq

Genomic Coordinates Forward (+)

21386199 .. 21388267

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28930.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCACTTGCCAAGGATAGAATGCCCCGTGATTCACTTCAGCATCAACTACCTTCTTCAGATCATCAACATCACCGTCTTTCTAATAATGGTTTTGTTTTTAGATCAGCAGCTTCTGCAACAAGTTGTTATCAAGCTGATGATGATCATGATCAGGTAGCTGCAGGCCACTCAGTCATCAACTTCAAGAGTAATGACTACACCAGTAGTTTCACCCACGACAACAGTGCGTCTCTACTTAGTTTTGAGAAAACCAACAACAGCATTACTCAAGACCACGACAGTTACAACTGCATCAACAGCGTCGACCCAGTTCGCCATTCCGGTGATTTCAATTGCTTCCAGACAGCTAGCACATACAATAGTTCCTCATCCAATCCTTCAAATGAAGGCCATGGATCAGAATTAGGGTCCGCTTATGGTTGGTTGTACTCGGACGCAACTCTAATGGCAGAAAGTTTCCCTGAACCAGAAACACAAGTCGGAGCATCCTTTCAAAAGCGCCCCCATAAGGGAGAGAACATGCAACCTTTAAAGAGGCAATGCACTAGTGATGTTTCTGCTGCTGCTGCTACAACCAAGAAGCCCAAACCCAAGTCTTCAAGTCCCTCAAAGGACCCCCAAAGTATTGCCGCCAAGAATCGGAGAGAGCGCATTAGCGAGCGGCTTAAGATACTCCAGGAACTGGTGCCCAATGGCTGCAAGGTTGATTTAGTAACCATGTTAGAGAAAGCCATTAGTTATGTCAAATTCCTTCAATTGCAAGTCAAGGTTTTAGCAACCGATGAATTTTGGCCGGTTCAAGGTGGAAAAGCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATCCTGTCATCTCAGAGAGACACAAGTTCCAGCTCAAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

299

Amino Acids

32.73

Weight (kDa)

6.59

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66470 AT5G37800
fragaria_vesca	FvH4_1g28930 FvH4_1g28930
malus_domestica	MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica	Prupe.3G159800_v2.0.a1
pyrus_communis	pycom09g17630 pycom17g25930
rosa_chinensis	RchiOBHm_Chr3g0493491
rosa_laevigata	RLG00000022711
rosa_multiflora	Rmu_sc0002343.1_g000071
rosa_roxburghii	Rroxscaffold_6G00391560
rosa_rugosa	Rorug03G0261100.1
rosa_samantha	Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana	Rw3G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	3 cut(s)	414, 633, 664
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	794
AcsI	RAATTY	2 cut(s)	749, 788
AcuI	CTGAAG	2 cut(s)	23, 42
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	5 cut(s)	511, 512, 642, 685, 803
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	7 cut(s)	187, 334, 384, 497, 603, 758, 803
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	7 cut(s)	113, 137, 161, 350, 815, 885, 892
AluI	AGCT	7 cut(s)	113, 137, 161, 350, 815, 885, 892
Alw26I	GTCTC	2 cut(s)	237, 864
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	2 cut(s)	116, 685
AoxI	GGCC	3 cut(s)	166, 391, 794
ApeKI	GCWGC	6 cut(s)	110, 161, 563, 566, 569, 699
ApoI	RAATTY	2 cut(s)	749, 788
AspLEI	GCGC	2 cut(s)	504, 654
AspS9I	GGNCC	2 cut(s)	411, 616
AsuHPI	GGTGA	3 cut(s)	65, 205, 338
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	411, 616
BaeGI	GKGCMC	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	6 cut(s)	122, 148, 550, 553, 556, 686
BccI	CCATC	1 cut(s)	860
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	680
BclI	TGATCA	2 cut(s)	145, 151
BcoDI	GTCTC	2 cut(s)	237, 864
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	2 cut(s)	351, 549
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	505
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	8 cut(s)	111, 162, 564, 567, 570, 633, 665, 700
BlsI	GCNGC	8 cut(s)	112, 163, 565, 568, 571, 634, 666, 701
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	2 cut(s)	411, 616
BmgT120I	GGNCC	2 cut(s)	411, 616
BmiI	GGNNCC	3 cut(s)	412, 618, 690
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	4 cut(s)	52, 303, 497, 838
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	255, 813
BsaBI	GATNNNNATC	2 cut(s)	144, 150
BsaJI	CCNNGG	2 cut(s)	12, 394
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	5 cut(s)	511, 512, 642, 685, 803
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	3 cut(s)	204, 311, 690
Bse3DI	GCAATG	1 cut(s)	548
Bse8I	GATNNNNATC	2 cut(s)	144, 150
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	2 cut(s)	12, 394
BseGI	GGATG	3 cut(s)	371, 488, 852
BseJI	GATNNNNATC	2 cut(s)	144, 150
BseLI	CCNNNNNNNGG	5 cut(s)	511, 512, 642, 685, 803
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	2 cut(s)	186, 878
BseNI	ACTGG	3 cut(s)	204, 311, 690
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	6 cut(s)	122, 148, 550, 553, 556, 686
BshFI	GGCC	3 cut(s)	168, 393, 796
BshNI	GGYRCC	1 cut(s)	688
BsiSI	CCGG	2 cut(s)	324, 797
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	5 cut(s)	511, 512, 642, 685, 803
BsmAI	GTCTC	2 cut(s)	237, 864
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	168, 393, 796
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	61, 104, 145, 151, 398
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	3 cut(s)	414, 633, 664
BspANI	GGCC	3 cut(s)	168, 393, 796
BspCNI	CTCAG	2 cut(s)	185, 877
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	412, 618, 690
BspMAI	CTGCAG	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	668
BsrBI	CCGCTC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	796
BsrI	ACTGG	3 cut(s)	204, 311, 690
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	2 cut(s)	12, 394
BssMI	GATC	5 cut(s)	61, 104, 145, 151, 398
BssT1I	CCWWGG	2 cut(s)	12, 394
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	3 cut(s)	77, 227, 284
BstAFI	CTTAAG	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	166, 352, 662
BstDEI	CTNAG	3 cut(s)	172, 239, 864
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	371, 488, 852
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	2 cut(s)	504, 654
BstKTI	GATC	5 cut(s)	64, 107, 148, 154, 401
BstMAI	GTCTC	2 cut(s)	237, 864
BstMBI	GATC	5 cut(s)	61, 104, 145, 151, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 300, 569, 848
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	693
BstV1I	GCAGC	6 cut(s)	122, 148, 550, 553, 556, 686
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	168, 393, 796
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	371, 488, 852
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	166, 352, 662
CaiI	CAGNNNCTG	2 cut(s)	116, 685
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	2 cut(s)	504, 654
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	2 cut(s)	411, 616
CseI	GACGC	3 cut(s)	219, 292, 446
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	149, 395, 523, 721
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	172, 239, 864
DpnI	GATC	5 cut(s)	63, 106, 147, 153, 400
DpnII	GATC	5 cut(s)	61, 104, 145, 151, 398
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	12, 394
Eco47I	GGWCC	2 cut(s)	411, 616
Eco57I	CTGAAG	2 cut(s)	23, 42
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	2 cut(s)	12, 394
ErhI	CCWWGG	2 cut(s)	12, 394
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	4 cut(s)	152, 398, 526, 724
FaiI	YATR	8 cut(s)	150, 358, 396, 420, 510, 524, 722, 744
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	4 cut(s)	148, 394, 522, 720
FbaI	TGATCA	2 cut(s)	145, 151
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	8 cut(s)	111, 162, 564, 567, 570, 633, 665, 700
FokI	GGATG	3 cut(s)	358, 475, 839
Fsp4HI	GCNGC	8 cut(s)	111, 162, 564, 567, 570, 633, 665, 700
FspBI	CTAG	2 cut(s)	351, 549
GlaI	GCGC	2 cut(s)	503, 653
GluI	GCNGC	8 cut(s)	111, 162, 564, 567, 570, 633, 665, 700
GsuI	CTGGAG	1 cut(s)	662
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	168, 393, 796
HapII	CCGG	2 cut(s)	324, 797
HgaI	GACGC	3 cut(s)	219, 292, 446
HhaI	GCGC	2 cut(s)	504, 654
Hin1II	CATG	4 cut(s)	152, 398, 526, 724
Hin6I	GCGC	2 cut(s)	502, 652
HinP1I	GCGC	2 cut(s)	502, 652
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	32, 640
HpaII	CCGG	2 cut(s)	324, 797
HphI	GGTGA	3 cut(s)	65, 205, 338
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	6 cut(s)	61, 403, 436, 485, 645, 867
Hpy188III	TCNNGA	5 cut(s)	149, 187, 272, 343, 818
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	4 cut(s)	63, 383, 390, 764
HpyCH4III	ACNGT	3 cut(s)	77, 227, 284
HpyCH4V	TGCA	7 cut(s)	119, 164, 294, 526, 546, 702, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 300, 569, 848
HpyF3I	CTNAG	3 cut(s)	172, 239, 864
Hsp92II	CATG	4 cut(s)	152, 398, 526, 724
HspAI	GCGC	2 cut(s)	502, 652
Ksp22I	TGATCA	2 cut(s)	145, 151
Kzo9I	GATC	5 cut(s)	61, 104, 145, 151, 398
LmnI	GCTCC	2 cut(s)	485, 820
Lsp1109I	GCAGC	6 cut(s)	122, 148, 550, 553, 556, 686
LweI	GCATC	4 cut(s)	52, 303, 497, 838
MaeI	CTAG	2 cut(s)	351, 549
MaeIII	GTNAC	2 cut(s)	284, 715
MalI	GATC	5 cut(s)	63, 106, 147, 153, 400
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	5 cut(s)	61, 104, 145, 151, 398
MboII	GAAGA	2 cut(s)	48, 591
MfeI	CAATTG	2 cut(s)	334, 758
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	5 cut(s)	334, 404, 749, 758, 788
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	3 cut(s)	379, 531, 619
MseI	TTAA	2 cut(s)	533, 669
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	2 cut(s)	324, 797
MspR9I	CCNGG	1 cut(s)	680
MunI	CAATTG	2 cut(s)	334, 758
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	4 cut(s)	116, 300, 569, 848
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	5 cut(s)	61, 104, 145, 151, 398
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	4 cut(s)	152, 398, 526, 724
NlaIV	GGNNCC	3 cut(s)	412, 618, 690
NspI	RCATGY	1 cut(s)	526
PagI	TCATGA	1 cut(s)	148
PctI	GAATGC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	32, 640
PflMI	CCANNNNNTGG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	8 cut(s)	112, 163, 565, 568, 571, 634, 666, 701
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	3 cut(s)	412, 618, 690
PspPI	GGNCC	2 cut(s)	411, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	2 cut(s)	116, 685
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	533, 669
SatI	GCNGC	8 cut(s)	111, 162, 564, 567, 570, 633, 665, 700
Sau3AI	GATC	5 cut(s)	61, 104, 145, 151, 398
Sau96I	GGNCC	2 cut(s)	411, 616
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	4 cut(s)	52, 303, 497, 838
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	411, 616
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	3 cut(s)	270, 668, 828
SmoI	CTYRAG	3 cut(s)	270, 668, 828
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	5 cut(s)	334, 404, 749, 758, 788
SsiI	CCGC	3 cut(s)	414, 633, 664
SspMI	CTAG	2 cut(s)	351, 549
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	2 cut(s)	12, 394
TaaI	ACNGT	3 cut(s)	77, 227, 284
TaqI	TCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	334, 404, 749, 758, 788
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	2 cut(s)	635, 667
TfiI	GAWTC	2 cut(s)	32, 640
Tru1I	TTAA	2 cut(s)	533, 669
Tru9I	TTAA	2 cut(s)	533, 669
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	6 cut(s)	110, 161, 563, 566, 569, 699
TspDTI	ATGAA	2 cut(s)	402, 801
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	685
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	411, 616
XapI	RAATTY	2 cut(s)	749, 788
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	2 cut(s)	351, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.