Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

15065300 .. 15069094

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCCATTCTCCTTCCCGACAACAACAACCACTTCTCTTCCATTCCACAAGGACCACAATCACTTCAACCTTAATCGAAATCTCCGATCGAGAAATAGGAGAATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGATACTGGTCGTGTTCTTAGTATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGGGTATCCTACATTTAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTCTTGAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGTCATTCCTGGATACAATTTTGGAGGTTATTAATAAGCTTCGCTCTGTAAACCCGAATCTTACATATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAACTGGTACATGTTTATCGTGAAAAGGTTGTTCCCTTGGCTTCTATGTTGACTCCTAACCAGTTTGAGGCAGAGAAGTTAACAGGACTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTGCTATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCATTCTATTACTTATCGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTCTACTTGGTTGGAGTAATAAATACCCTGACAACCTTGACAAAGCAGCCGAGCTTGCAGTTTCAACGTTGCAGGCGCTTTTGCGAAGGACGCTTGATGATTACAAACGAGCTGGGTATGATCCTACCTCAAGCAGTTTGGAGATTAGATTGATACAAAGCCAGGAAGACATTCGCAACCCGAAGGTCGAACTGAAAGCTGAAAGATACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

343

Amino Acids

38.17

Weight (kDa)

6.56

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	124 - 203	4.4e-13	Phosphomethylpyrimidine kinase
PfkB	PF00294	151 - 247	5.5e-07	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	884
AclWI	GGATC	5 cut(s)	236, 249, 400, 467, 932
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	123, 531
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	258, 522
AfiI	CCNNNNNNNGG	2 cut(s)	482, 580
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	67, 221, 307, 335, 344, 666, 757, 882
AjnI	CCWGG	2 cut(s)	405, 978
AluBI	AGCT	8 cut(s)	206, 436, 635, 656, 871, 929, 1016, 1029
AluI	AGCT	8 cut(s)	206, 436, 635, 656, 871, 929, 1016, 1029
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	5 cut(s)	236, 249, 400, 467, 932
AlwNI	CAGNNNCTG	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	653, 863
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AseI	ATTAAT	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	987
AspLEI	GCGC	1 cut(s)	895
AspS9I	GGNCC	2 cut(s)	52, 659
AsuHPI	GGTGA	2 cut(s)	490, 497
AvaII	GGWCC	2 cut(s)	52, 659
BamHI	GGATCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BbsI	GAAGAC	1 cut(s)	990
BbvI	GCAGC	2 cut(s)	665, 875
BccI	CCATC	3 cut(s)	475, 617, 729
BciT130I	CCWGG	2 cut(s)	407, 980
BciVI	GTATCC	3 cut(s)	173, 291, 403
BclI	TGATCA	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	896
BfuI	GTATCC	3 cut(s)	173, 291, 403
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	2 cut(s)	654, 864
BlsI	GCNGC	2 cut(s)	655, 865
Bme1390I	CCNGG	2 cut(s)	407, 980
Bme18I	GGWCC	2 cut(s)	52, 659
BmgT120I	GGNCC	2 cut(s)	52, 659
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	407, 980
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	725, 931
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 580
Bse1I	ACTGG	4 cut(s)	116, 151, 522, 574
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	407, 980
BseDI	CCNNGG	1 cut(s)	549
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	482, 580
BseMII	CTCAG	2 cut(s)	606, 738
BseNI	ACTGG	4 cut(s)	116, 151, 522, 574
BseXI	GCAGC	2 cut(s)	665, 875
BseYI	CCCAGC	1 cut(s)	929
Bsh1285I	CGRYCG	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	482, 580
BsmAI	GTCTC	1 cut(s)	743
BsmI	GAATGC	1 cut(s)	699
Bso31I	GGTCTC	1 cut(s)	743
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
BspCNI	CTCAG	2 cut(s)	607, 739
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	5 cut(s)	236, 249, 400, 467, 932
BspQI	GCTCTTC	2 cut(s)	138, 822
BspTNI	GGTCTC	1 cut(s)	743
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	4 cut(s)	116, 151, 522, 574
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	407, 980
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	4 cut(s)	42, 138, 222, 822
BstACI	GRCGYC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	873, 891
BstDEI	CTNAG	4 cut(s)	158, 602, 615, 747
BstH2I	RGCGCY	1 cut(s)	896
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	7 cut(s)	89, 244, 395, 475, 678, 805, 940
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	872, 907
BstNI	CCWGG	2 cut(s)	407, 980
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	405, 978
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	665, 875
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	2 cut(s)	241, 802
BstYI	RGATCY	2 cut(s)	241, 802
BsuI	GTATCC	3 cut(s)	173, 291, 403
BtsIMutI	CAGTG	2 cut(s)	174, 402
Cac8I	GCNNGC	2 cut(s)	873, 891
CaiI	CAGNNNCTG	1 cut(s)	146
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	52, 659
CseI	GACGC	2 cut(s)	118, 916
Csp6I	GTAC	2 cut(s)	257, 521
CviAII	CATG	4 cut(s)	371, 524, 650, 808
CviQI	GTAC	2 cut(s)	257, 521
DdeI	CTNAG	4 cut(s)	158, 602, 615, 747
DpnI	GATC	7 cut(s)	88, 243, 394, 474, 677, 804, 939
DpnII	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	4 cut(s)	42, 138, 222, 822
EarI	CTCTTC	4 cut(s)	42, 138, 222, 822
Eco130I	CCWWGG	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	52, 659
Eco57I	CTGAAG	2 cut(s)	123, 531
EcoRII	CCWGG	2 cut(s)	405, 978
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	374, 527, 653, 811
FatI	CATG	4 cut(s)	370, 523, 649, 807
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	654, 864
Fsp4HI	GCNGC	2 cut(s)	654, 864
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	2 cut(s)	654, 864
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	896
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	2 cut(s)	118, 916
HhaI	GCGC	1 cut(s)	895
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	374, 527, 653, 811
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HincII	GTYRAC	2 cut(s)	564, 594
HindII	GTYRAC	2 cut(s)	564, 594
HindIII	AAGCTT	2 cut(s)	434, 633
HinfI	GANTC	3 cut(s)	268, 454, 565
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	2 cut(s)	490, 497
Hpy166II	GTNNAC	3 cut(s)	448, 564, 594
Hpy188I	TCNGA	5 cut(s)	86, 142, 616, 716, 726
Hpy188III	TCNNGA	7 cut(s)	16, 90, 265, 341, 533, 757, 808
Hpy8I	GTNNAC	3 cut(s)	448, 564, 594
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	7 cut(s)	22, 147, 329, 485, 672, 897, 994
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	884
HpyCH4V	TGCA	3 cut(s)	653, 875, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	872, 907
HpyF3I	CTNAG	4 cut(s)	158, 602, 615, 747
HpySE526I	ACGT	1 cut(s)	884
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	374, 527, 653, 811
HspAI	GCGC	1 cut(s)	893
Ksp22I	TGATCA	1 cut(s)	675
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
LguI	GCTCTTC	2 cut(s)	138, 822
Lsp1109I	GCAGC	2 cut(s)	665, 875
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	884
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	7 cut(s)	88, 243, 394, 474, 677, 804, 939
MboI	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
MboII	GAAGA	8 cut(s)	29, 125, 209, 524, 632, 638, 809, 995
MfeI	CAATTG	2 cut(s)	221, 317
MflI	RGATCY	2 cut(s)	241, 802
MluCI	AATT	6 cut(s)	221, 260, 317, 414, 610, 752
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	7 cut(s)	123, 225, 415, 574, 610, 689, 955
MroXI	GAANNNNTTC	1 cut(s)	987
MseI	TTAA	5 cut(s)	72, 291, 377, 429, 593
MslI	CAYNNNNRTG	1 cut(s)	466
MspA1I	CMGCKG	3 cut(s)	206, 656, 1029
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	2 cut(s)	407, 980
MunI	CAATTG	2 cut(s)	221, 317
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	2 cut(s)	407, 980
MwoI	GCNNNNNNNGC	2 cut(s)	872, 907
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
NlaIII	CATG	4 cut(s)	374, 527, 653, 811
NlaIV	GGNNCC	1 cut(s)	243
NmeAIII	GCCGAG	1 cut(s)	892
NspI	RCATGY	1 cut(s)	527
PagI	TCATGA	1 cut(s)	807
PciI	ACATGT	1 cut(s)	523
PciSI	GCTCTTC	2 cut(s)	138, 822
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PctI	GAATGC	1 cut(s)	699
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	2 cut(s)	268, 454
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	655, 865
Ple19I	CGATCG	1 cut(s)	89
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	884
Psp6I	CCWGG	2 cut(s)	405, 978
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	2 cut(s)	405, 978
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	52, 659
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	241, 802
PvuI	CGATCG	1 cut(s)	89
PvuII	CAGCTG	3 cut(s)	206, 656, 1029
RsaI	GTAC	2 cut(s)	258, 522
RsaNI	GTAC	2 cut(s)	257, 521
RseI	CAYNNNNRTG	1 cut(s)	466
SapI	GCTCTTC	2 cut(s)	138, 822
SaqAI	TTAA	5 cut(s)	72, 291, 377, 429, 593
SatI	GCNGC	2 cut(s)	654, 864
Sau3AI	GATC	7 cut(s)	86, 241, 392, 472, 675, 802, 937
Sau96I	GGNCC	2 cut(s)	52, 659
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	407, 980
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	52, 659
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	740, 946
SmoI	CTYRAG	2 cut(s)	740, 946
Sse9I	AATT	6 cut(s)	221, 260, 317, 414, 610, 752
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	405, 978
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	4 cut(s)	76, 89, 266, 1005
TasI	AATT	6 cut(s)	221, 260, 317, 414, 610, 752
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	268, 454
Tru1I	TTAA	5 cut(s)	72, 291, 377, 429, 593
Tru9I	TTAA	5 cut(s)	72, 291, 377, 429, 593
TscAI	CASTG	2 cut(s)	181, 402
TseI	GCWGC	2 cut(s)	653, 863
TspDTI	ATGAA	2 cut(s)	504, 638
TspRI	CASTG	2 cut(s)	181, 402
VpaK11BI	GGWCC	2 cut(s)	52, 659
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.