Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Reverse (-)

24559634 .. 24559888

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGATTGGCATGTCAAGAAGAACCGTATGTCCAAAACCCTCAAGCAGAAGCCCTTTCGTAACTTTTATGCAACTACAAGCATGTGGCTCGTTACTGATGCAAAGGCTGAGGCTGAGGCATTACTTTCTGGTGTAGTTTTGCCTGCTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAAAGTAAATGTGCCTTATGCAGAGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

84

Amino Acids

9.4

Weight (kDa)

8.62

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	167, 212
AclWI	GGATC	1 cut(s)	228
AhlI	ACTAGT	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AlwI	GGATC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	188
BbvCI	CCTCAGC	2 cut(s)	108, 114
BbvI	GCAGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	108, 114
BpuEI	CTTGAG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	99, 105
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	167, 212
BspCNI	CTCAG	2 cut(s)	100, 106
BspPI	GGATC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	108, 114
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstNSI	RCATGY	2 cut(s)	14, 85
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	144
CviAII	CATG	2 cut(s)	11, 82
CviJI	RGCY	4 cut(s)	52, 88, 107, 113
CviKI_1	RGCY	4 cut(s)	52, 88, 107, 113
DdeI	CTNAG	2 cut(s)	108, 114
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	182
FaeI	CATG	2 cut(s)	14, 85
FaiI	YATR	6 cut(s)	12, 29, 69, 83, 241, 253
FatI	CATG	2 cut(s)	10, 81
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	14, 85
Hpy188III	TCNNGA	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	71, 101, 243
HpyF3I	CTNAG	2 cut(s)	108, 114
Hsp92II	CATG	2 cut(s)	14, 85
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	4 cut(s)	114, 156, 169, 222
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	59, 91
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	31, 193, 206
MnlI	CCTC	4 cut(s)	50, 103, 109, 211
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	14, 85
NspI	RCATGY	2 cut(s)	14, 85
PkrI	GCNGC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	167, 212
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	26
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	163
XceI	RCATGY	2 cut(s)	14, 85
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.