Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Reverse (-)

35707613 .. 35715372

Gene Structure 7760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG307000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTCCTCCTCCCATCCTTTCGTTGGCTCTGCCTTCCGAGACTGGTCGAGTTCTCAGTATCCAATCCCACACTGTTCAGGGATATGTTGGGAATAAATCAGCTGTGTTCCCCCTGCAATTATTAGGCTATGATGTGGATCCAATTAATTCTGTCCAGTTCTCAAACCACACAGGATACCCAACATTTAAGGGTCAAGTTTTAAATGGAGAACAGCTTTGGGAATTGATACAAGGCCTTGAATCAAATGATCTATTATACTACACTCATTTATTAACAGGTTATATTGGTTCAGTTTCTTTTCTGAGCACTGTATTGGAAGTTGTCAATAAACTTCGCTCTATAAACCCAAAACTTAGATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTCCCTCCAGAGCTGGTATCTGTATATCGTGAAAAGGTTGTCCCTGTTGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAATTGTTGACCAACTCCAGGATTGAGTCCGAAAGAGATGGCCGTGAAGCTTGTAACATTCTTCACGCTGCTGGACCATCAATGGTTGTGATAACAAGCATAAATATAGATGGTAATCTTCTTCTAATTGGTAGTCATCAAAAGGAACAAGGTCTGTCTCCAGAGCAATTCAAGATTGTGATTCCTAAGATTCCTGCGTATTTCACGGGTACAGGAGATCTTACAACTGCGCTTCTACTTGGTTGGAGTAATAAATATCCTAACAACCTAGATAAGGCTGCGGAGCTTGCTGTATCAACCGTGCAGGCCCTTCTGCAGAGAACAGTAAATGATTATAAAACTGCTGGCCATGATCCCCAGTCAACCAGTTTAGAGATTCGATTAATACAAAGTCAAGATGACATTCGTCAACCTGAGATTAAATTCAGAGCTGAAAGATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

309

Amino Acids

34.12

Weight (kDa)

5.43

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	93 - 267	1.4e-14	Phosphomethylpyrimidine kinase
PfkB	PF00294	145 - 209	4.1e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AciI	CCGC	1 cut(s)	764
AclWI	GGATC	4 cut(s)	134, 147, 365, 830
AcoI	YGGCCR	2 cut(s)	523, 829
AcsI	RAATTY	1 cut(s)	905
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	4 cut(s)	25, 380, 501, 757
AgsI	TTSAA	4 cut(s)	242, 456, 479, 655
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	7 cut(s)	104, 217, 397, 415, 533, 769, 914
AluI	AGCT	7 cut(s)	104, 217, 397, 415, 533, 769, 914
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	35, 645
AlwI	GGATC	4 cut(s)	134, 147, 365, 830
AoxI	GGCC	4 cut(s)	235, 523, 789, 829
ApeKI	GCWGC	2 cut(s)	551, 761
ApoI	RAATTY	1 cut(s)	905
AseI	ATTAAT	2 cut(s)	147, 866
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	2 cut(s)	557, 790
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	831
BamHI	GGATCC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	538, 748
BccI	CCATC	5 cut(s)	23, 373, 515, 568, 587
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	1 cut(s)	502
BciVI	GTATCC	2 cut(s)	71, 170
BcoDI	GTCTC	2 cut(s)	35, 645
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	1 cut(s)	797
BfuI	GTATCC	2 cut(s)	71, 170
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	2 cut(s)	552, 762
BlsI	GCNGC	2 cut(s)	553, 763
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	557, 790
BmiI	GGNNCC	2 cut(s)	6, 141
BmrFI	CCNGG	1 cut(s)	502
BmrI	ACTGGG	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	835
BoxI	GACNNNNGTC	1 cut(s)	888
BpmI	CTGGAG	3 cut(s)	393, 484, 627
BsaBI	GATNNNNATC	2 cut(s)	138, 597
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 380, 501, 757
Bse1I	ACTGG	6 cut(s)	49, 157, 374, 472, 841, 849
Bse8I	GATNNNNATC	2 cut(s)	138, 597
BseBI	CCWGG	1 cut(s)	502
BseGI	GGATG	1 cut(s)	15
BseJI	GATNNNNATC	2 cut(s)	138, 597
BseLI	CCNNNNNNNGG	4 cut(s)	25, 380, 501, 757
BseMII	CTCAG	3 cut(s)	70, 296, 888
BseNI	ACTGG	6 cut(s)	49, 157, 374, 472, 841, 849
BseXI	GCAGC	2 cut(s)	538, 748
BsgI	GTGCAG	1 cut(s)	806
BshFI	GGCC	4 cut(s)	237, 525, 791, 831
BsiHKAI	GWGCWC	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	389, 428
BslI	CCNNNNNNNGG	4 cut(s)	25, 380, 501, 757
BsmAI	GTCTC	2 cut(s)	35, 645
BsmFI	GGGAC	2 cut(s)	389, 428
BsnI	GGCC	4 cut(s)	237, 525, 791, 831
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	5 cut(s)	139, 250, 370, 700, 835
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	4 cut(s)	237, 525, 791, 831
BspCNI	CTCAG	3 cut(s)	69, 297, 889
BspLI	GGNNCC	2 cut(s)	6, 141
BspMAI	CTGCAG	1 cut(s)	801
BspPI	GGATC	4 cut(s)	134, 147, 365, 830
BsrI	ACTGG	6 cut(s)	49, 157, 374, 472, 841, 849
BssMI	GATC	5 cut(s)	139, 250, 370, 700, 835
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	4 cut(s)	76, 313, 784, 808
BstC8I	GCNNGC	3 cut(s)	771, 789, 829
BstDEI	CTNAG	5 cut(s)	56, 305, 356, 669, 897
BstENI	CCTNNNNNAGG	1 cut(s)	755
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	5 cut(s)	142, 253, 373, 703, 838
BstMAI	GTCTC	2 cut(s)	35, 645
BstMBI	GATC	5 cut(s)	139, 250, 370, 700, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	502
BstPAI	GACNNNNGTC	1 cut(s)	888
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	797
BstV1I	GCAGC	2 cut(s)	538, 748
BstX2I	RGATCY	2 cut(s)	139, 700
BstYI	RGATCY	2 cut(s)	139, 700
BsuI	GTATCC	2 cut(s)	71, 170
BsuRI	GGCC	4 cut(s)	237, 525, 791, 831
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	72, 309, 381
Cac8I	GCNNGC	3 cut(s)	771, 789, 829
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	2 cut(s)	557, 790
Csp6I	GTAC	1 cut(s)	693
CviAII	CATG	1 cut(s)	833
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	5 cut(s)	56, 305, 356, 669, 897
DpnI	GATC	5 cut(s)	141, 252, 372, 702, 837
DpnII	GATC	5 cut(s)	139, 250, 370, 700, 835
DraI	TTTAAA	1 cut(s)	204
EaeI	YGGCCR	2 cut(s)	523, 829
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRII	CCWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	836
FaqI	GGGAC	2 cut(s)	389, 428
FatI	CATG	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	552, 762
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	2 cut(s)	552, 762
FspBI	CTAG	1 cut(s)	752
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	2 cut(s)	552, 762
GsuI	CTGGAG	3 cut(s)	393, 484, 627
HaeIII	GGCC	4 cut(s)	237, 525, 791, 831
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	1 cut(s)	836
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	4 cut(s)	462, 492, 846, 893
HindII	GTYRAC	4 cut(s)	462, 492, 846, 893
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	6 cut(s)	242, 463, 509, 664, 673, 859
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	4 cut(s)	462, 492, 846, 893
Hpy188I	TCNGA	4 cut(s)	40, 306, 514, 911
Hpy188III	TCNNGA	5 cut(s)	410, 431, 644, 655, 878
Hpy8I	GTNNAC	4 cut(s)	462, 492, 846, 893
HpyAV	CCTTC	3 cut(s)	45, 383, 803
HpyCH4III	ACNGT	4 cut(s)	76, 313, 784, 808
HpyCH4V	TGCA	3 cut(s)	118, 787, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	5 cut(s)	56, 305, 356, 669, 897
Hsp92II	CATG	1 cut(s)	836
HspAI	GCGC	1 cut(s)	713
Kzo9I	GATC	5 cut(s)	139, 250, 370, 700, 835
LmnI	GCTCC	2 cut(s)	10, 766
Lsp1109I	GCAGC	2 cut(s)	538, 748
MaeI	CTAG	1 cut(s)	752
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	5 cut(s)	141, 252, 372, 702, 837
MboI	GATC	5 cut(s)	139, 250, 370, 700, 835
MboII	GAAGA	3 cut(s)	536, 593, 596
MflI	RGATCY	2 cut(s)	139, 700
MhlI	GDGCHC	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	8 cut(s)	119, 144, 148, 224, 485, 609, 650, 905
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	2 cut(s)	457, 518
MmeI	TCCRAC	1 cut(s)	707
MnlI	CCTC	3 cut(s)	18, 21, 417
Mox20I	TGGCCA	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	6 cut(s)	147, 189, 203, 275, 866, 903
Msp20I	TGGCCA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	770
NdeII	GATC	5 cut(s)	139, 250, 370, 700, 835
NlaIII	CATG	1 cut(s)	836
NlaIV	GGNNCC	2 cut(s)	6, 141
PceI	AGGCCT	1 cut(s)	237
PfeI	GAWTC	4 cut(s)	242, 664, 673, 859
PfoI	TCCNGGA	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	553, 763
PleI	GAGTC	2 cut(s)	457, 517
PpsI	GAGTC	2 cut(s)	457, 517
PshAI	GACNNNNGTC	1 cut(s)	888
PshBI	ATTAAT	2 cut(s)	147, 866
PsiI	TTATAA	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	6, 141
PspPI	GGNCC	2 cut(s)	557, 790
PstI	CTGCAG	1 cut(s)	801
PsuI	RGATCY	2 cut(s)	139, 700
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
SaqAI	TTAA	6 cut(s)	147, 189, 203, 275, 866, 903
SatI	GCNGC	2 cut(s)	552, 762
Sau3AI	GATC	5 cut(s)	139, 250, 370, 700, 835
Sau96I	GGNCC	2 cut(s)	557, 790
SchI	GAGTC	2 cut(s)	457, 518
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	797
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	8 cut(s)	119, 144, 148, 224, 485, 609, 650, 905
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	764
SspMI	CTAG	1 cut(s)	752
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	4 cut(s)	76, 313, 784, 808
TaqI	TCGA	2 cut(s)	49, 862
TasI	AATT	8 cut(s)	119, 144, 148, 224, 485, 609, 650, 905
TfiI	GAWTC	4 cut(s)	242, 664, 673, 859
Tru1I	TTAA	6 cut(s)	147, 189, 203, 275, 866, 903
Tru9I	TTAA	6 cut(s)	147, 189, 203, 275, 866, 903
TscAI	CASTG	3 cut(s)	79, 316, 381
TseI	GCWGC	2 cut(s)	551, 761
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	79, 316, 381
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	2 cut(s)	147, 866
XagI	CCTNNNNNAGG	1 cut(s)	755
XapI	RAATTY	1 cut(s)	905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.