Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

9175566 .. 9184202

Gene Structure 8637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1075700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTTTCTTCACTCCGACCTGCTCCTTCACCAGCAATCTCTGGTTCACAGTTTCACCACAAGCTCACATTTTCCGGGAAAAAGAAGGTCGGGAAGCTCTCGAAGCTTGGTGTATCCGGACATGGCTCCGCCGGTCCTGTCCTTGGTTCTGCCCTCTGAGACCGGTCGGGTTCTTAGTATTCAATCTCATACTGTCCAGAAATTGGAGAAGCTAGAAGCTTTATTAAGGCCTCGTTTGGCACGGCGGCCTGTCATGGACAGGACTATAATATATCCTTGGACTGTACTCGAATCTCGTATAAAAGTCAAAAGATACCCAACTTTTAAGGGTCAAGTTTTGAATGGACAGCAACTATGGGAATTGGTAGAAGGCCTTGAAGCAAATGAGTTATTATACTACACTCATCTATTAACAGGTTATATTGGTTCAGTTTCGTTTTTGAGCACTGTGTTGGAGGTTGTCAATAAGCTTCGCTCTGTAAACCCAAAACTTACATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTCTATGTCCCTCAAGAGCTGGTAGCAGTCTATCGGGAGAAGGTTGTCCCAGTGGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTCTTGACTAACTCGAGGATTGAATCTGAAAAAGATGGTCGTGAAGCTTGTAACCTTCTTCATGCTGCGGGACCGTCAATGGTTGTGATAACAAGCATAAATATAAATGGTAATCTTCTTCTGATTGGTAGTCATCAAAAGGAAAAGGGTCTGCCTGCCAAGCAATTCAAGATAGTGATTCCTAAAATTCCTGCATACTTTACGGGAACAGGAGATCTCACGACTGCTCTTCTCCTTGGGTGGAGCAATAAATATCCTGACAACCTAGAGAAGGCAGCTGAGCTTGCTGTATCATCCTTGCAGGCTCTTCTGCAAAGGACGATTAGTGACTATAAAAGTGCCGGTCATGATCCCAAGTCAACCAGTCTGGAGATTCGATTAATTCAAAGCCAGGACGACATTCGTAACCCGGAAATCAAATTTAGAGCTGAAAGATACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

355

Amino Acids

39.68

Weight (kDa)

9.11

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	138 - 244	2.3e-14	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	3 cut(s)	128, 244, 689
AclWI	GGATC	2 cut(s)	500, 965
AcsI	RAATTY	2 cut(s)	807, 1040
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	142, 202, 515, 892
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	8 cut(s)	182, 340, 377, 591, 614, 644, 790, 1007
AjnI	CCWGG	1 cut(s)	1011
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	500, 965
Ama87I	CYCGRG	1 cut(s)	634
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	3 cut(s)	227, 245, 370
ApeKI	GCWGC	2 cut(s)	686, 896
ApoI	RAATTY	2 cut(s)	807, 1040
AseI	ATTAAT	1 cut(s)	1001
AsiGI	ACCGGT	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	133, 692
AsuC2I	CCSGG	2 cut(s)	75, 1031
AsuHPI	GGTGA	3 cut(s)	20, 46, 530
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	133, 692
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	673, 908
BccI	CCATC	2 cut(s)	508, 650
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	1013
BciVI	GTATCC	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	75, 1031
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	212, 887
BfuAI	ACCTGC	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	3 cut(s)	245, 687, 897
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	3 cut(s)	246, 688, 898
Bme1390I	CCNGG	3 cut(s)	75, 1013, 1031
Bme18I	GGWCC	2 cut(s)	133, 692
BmeT110I	CYCGRG	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	133, 692
BmiI	GGNNCC	2 cut(s)	126, 693
BmrFI	CCNGG	3 cut(s)	75, 1013, 1031
BmrI	ACTGGG	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	1010
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	75, 1031
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	141, 275, 856
BsaWI	WCCGGW	2 cut(s)	115, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 202, 515, 892
Bse118I	RCCGGY	3 cut(s)	130, 161, 962
Bse1I	ACTGG	4 cut(s)	509, 581, 607, 984
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	1013
BseDI	CCNNGG	3 cut(s)	141, 275, 856
BseGI	GGATG	1 cut(s)	914
BseLI	CCNNNNNNNGG	4 cut(s)	142, 202, 515, 892
BseMII	CTCAG	2 cut(s)	147, 891
BseNI	ACTGG	4 cut(s)	509, 581, 607, 984
BseXI	GCAGC	2 cut(s)	673, 908
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	229, 247, 372
BshTI	ACCGGT	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	6 cut(s)	74, 116, 131, 162, 963, 1031
BslFI	GGGAC	3 cut(s)	524, 563, 705
BslI	CCNNNNNNNGG	4 cut(s)	142, 202, 515, 892
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	524, 563, 705
BsnI	GGCC	3 cut(s)	229, 247, 372
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	505, 835, 970
Bsp1720I	GCTNAGC	1 cut(s)	900
BspACI	CCGC	3 cut(s)	128, 244, 689
BspANI	GGCC	3 cut(s)	229, 247, 372
BspCNI	CTCAG	2 cut(s)	148, 892
BspEI	TCCGGA	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	967
BspLI	GGNNCC	2 cut(s)	126, 693
BspMI	ACCTGC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	500, 965
BspQI	GCTCTTC	2 cut(s)	855, 933
BspTNI	GGTCTC	1 cut(s)	152
BsrFI	RCCGGY	3 cut(s)	130, 161, 962
BsrI	ACTGG	4 cut(s)	509, 581, 607, 984
BssAI	RCCGGY	3 cut(s)	130, 161, 962
BssECI	CCNNGG	3 cut(s)	141, 275, 856
BssMI	GATC	3 cut(s)	505, 835, 970
BssT1I	CCWWGG	3 cut(s)	141, 275, 856
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	5 cut(s)	50, 193, 283, 448, 696
Bst6I	CTCTTC	2 cut(s)	855, 933
BstC8I	GCNNGC	3 cut(s)	777, 906, 924
BstDEI	CTNAG	3 cut(s)	156, 173, 900
BstENI	CCTNNNNNAGG	1 cut(s)	890
BstF5I	GGATG	1 cut(s)	914
BstKTI	GATC	3 cut(s)	508, 838, 973
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	505, 835, 970
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 781, 905
BstNI	CCWGG	1 cut(s)	1013
BstSCI	CCNGG	3 cut(s)	73, 1011, 1029
BstV1I	GCAGC	2 cut(s)	673, 908
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	229, 247, 372
BtsCI	GGATG	1 cut(s)	914
BtsIMutI	CAGTG	3 cut(s)	444, 516, 588
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	777, 906, 924
CciI	TCATGA	1 cut(s)	967
Cfr10I	RCCGGY	3 cut(s)	130, 161, 962
Cfr13I	GGNCC	2 cut(s)	133, 692
Csp6I	GTAC	1 cut(s)	284
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	4 cut(s)	121, 253, 683, 968
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	156, 173, 900
DpnI	GATC	3 cut(s)	507, 837, 972
DpnII	GATC	3 cut(s)	505, 835, 970
Eam1104I	CTCTTC	2 cut(s)	855, 933
EarI	CTCTTC	2 cut(s)	855, 933
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	3 cut(s)	141, 275, 856
Eco147I	AGGCCT	2 cut(s)	229, 372
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	133, 692
Eco88I	CYCGRG	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	1011
EcoT14I	CCWWGG	3 cut(s)	141, 275, 856
ErhI	CCWWGG	3 cut(s)	141, 275, 856
FaeI	CATG	4 cut(s)	124, 256, 686, 971
FaqI	GGGAC	3 cut(s)	524, 563, 705
FatI	CATG	4 cut(s)	120, 252, 682, 967
FauI	CCCGC	1 cut(s)	682
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	245, 687, 897
FokI	GGATG	1 cut(s)	901
Fsp4HI	GCNGC	3 cut(s)	245, 687, 897
FspBI	CTAG	2 cut(s)	212, 887
GluI	GCNGC	3 cut(s)	245, 687, 897
GsuI	CTGGAG	1 cut(s)	1010
HaeIII	GGCC	3 cut(s)	229, 247, 372
HapII	CCGG	6 cut(s)	74, 116, 131, 162, 963, 1031
Hin1II	CATG	4 cut(s)	124, 256, 686, 971
HincII	GTYRAC	2 cut(s)	597, 981
HindII	GTYRAC	2 cut(s)	597, 981
HindIII	AAGCTT	4 cut(s)	103, 216, 467, 666
HinfI	GANTC	5 cut(s)	290, 598, 644, 799, 994
HpaII	CCGG	6 cut(s)	74, 116, 131, 162, 963, 1031
HphI	GGTGA	3 cut(s)	20, 46, 530
Hpy166II	GTNNAC	4 cut(s)	46, 481, 597, 981
Hpy188I	TCNGA	4 cut(s)	16, 157, 649, 744
Hpy8I	GTNNAC	4 cut(s)	46, 481, 597, 981
HpyAV	CCTTC	7 cut(s)	35, 78, 362, 518, 565, 686, 886
HpyCH4III	ACNGT	5 cut(s)	50, 193, 283, 448, 696
HpyCH4V	TGCA	3 cut(s)	815, 922, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 781, 905
HpyF3I	CTNAG	3 cut(s)	156, 173, 900
Hsp92II	CATG	4 cut(s)	124, 256, 686, 971
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	505, 835, 970
LguI	GCTCTTC	2 cut(s)	855, 933
LmnI	GCTCC	3 cut(s)	27, 130, 864
Lsp1109I	GCAGC	2 cut(s)	673, 908
MaeI	CTAG	2 cut(s)	212, 887
MaeIII	GTNAC	3 cut(s)	671, 947, 1025
MalI	GATC	3 cut(s)	507, 837, 972
MboI	GATC	3 cut(s)	505, 835, 970
MboII	GAAGA	5 cut(s)	671, 728, 731, 842, 920
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	6 cut(s)	200, 359, 785, 807, 1002, 1040
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	2 cut(s)	39, 432
MnlI	CCTC	5 cut(s)	163, 240, 448, 552, 630
MroI	TCCGGA	1 cut(s)	115
MseI	TTAA	4 cut(s)	224, 324, 410, 1001
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	6 cut(s)	74, 116, 131, 162, 963, 1031
MspR9I	CCNGG	3 cut(s)	75, 1013, 1031
MvaI	CCWGG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	3 cut(s)	102, 781, 905
NciI	CCSGG	2 cut(s)	75, 1031
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	3 cut(s)	505, 835, 970
NlaIII	CATG	4 cut(s)	124, 256, 686, 971
NlaIV	GGNNCC	2 cut(s)	126, 693
NmuCI	GTSAC	1 cut(s)	947
PaeR7I	CTCGAG	1 cut(s)	634
PagI	TCATGA	1 cut(s)	967
PceI	AGGCCT	2 cut(s)	229, 372
PciSI	GCTCTTC	2 cut(s)	855, 933
PfeI	GAWTC	4 cut(s)	290, 644, 799, 994
PflMI	CCANNNNNTGG	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	246, 688, 898
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PshBI	ATTAAT	1 cut(s)	1001
Psp6I	CCWGG	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	2 cut(s)	126, 693
PspPI	GGNCC	2 cut(s)	133, 692
PspXI	VCTCGAGB	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SapI	GCTCTTC	2 cut(s)	855, 933
SaqAI	TTAA	4 cut(s)	224, 324, 410, 1001
SatI	GCNGC	3 cut(s)	245, 687, 897
Sau3AI	GATC	3 cut(s)	505, 835, 970
Sau96I	GGNCC	2 cut(s)	133, 692
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	3 cut(s)	75, 1013, 1031
SduI	GDGCHC	1 cut(s)	446
Sfr274I	CTCGAG	1 cut(s)	634
SinI	GGWCC	2 cut(s)	133, 692
SlaI	CTCGAG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	543, 634
SmoI	CTYRAG	2 cut(s)	543, 634
Sse9I	AATT	6 cut(s)	200, 359, 785, 807, 1002, 1040
SseBI	AGGCCT	2 cut(s)	229, 372
SsiI	CCGC	3 cut(s)	128, 244, 689
SspMI	CTAG	2 cut(s)	212, 887
StuI	AGGCCT	2 cut(s)	229, 372
StyD4I	CCNGG	3 cut(s)	73, 1011, 1029
StyI	CCWWGG	3 cut(s)	141, 275, 856
TaaI	ACNGT	5 cut(s)	50, 193, 283, 448, 696
TaqI	TCGA	4 cut(s)	100, 288, 635, 997
TasI	AATT	6 cut(s)	200, 359, 785, 807, 1002, 1040
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	4 cut(s)	290, 644, 799, 994
Tru1I	TTAA	4 cut(s)	224, 324, 410, 1001
Tru9I	TTAA	4 cut(s)	224, 324, 410, 1001
TscAI	CASTG	3 cut(s)	451, 516, 588
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	2 cut(s)	686, 896
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	2 cut(s)	537, 671
TspRI	CASTG	3 cut(s)	451, 516, 588
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	133, 692
VspI	ATTAAT	1 cut(s)	1001
XagI	CCTNNNNNAGG	1 cut(s)	890
XapI	RAATTY	2 cut(s)	807, 1040
XhoI	CTCGAG	1 cut(s)	634
XspI	CTAG	2 cut(s)	212, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.