Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

17692872 .. 17702179

Gene Structure 9308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G158100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTGTTTCAGTCTGAGCTCGCAAGCCATTTCCGATTGACAATTTCCCGAGAAAATCACATTTTCCGAAGGTCGGGAAGCTCGCGAAGCTTGAGAAATTCGAAAATGGCTCCTCCAATCCTTTCCTTGGTTCTGCCCTCCGAGACTGGTCGAGTTCTGAGTATTCAATCTCATACAGTCCAGGGATATGTGGGGAATAAGTCAGCTGTATTTCCCTTGCAACTATTAGGCTATGATGTGGATCCAATTAATTCAGTCCAGTTCTCAAACCACACAGGATACCCAACTTTTAAGGGTCAAGTTTTGAATGGACAACAGCTATGGGAATTGATAGAAGGCCTTGAAGAAAATGATTTATTATACTACACTCATTTATTAACAGGTTATATTGGTTCAGTTTCGTTTTTGAGCACTATATTGGAGGTTGTCAATAAACTTCGCTCTGTAAACCCAAAACTTAAATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTCTATGTCCCTCCAGAATTGGTATCAGTATATCGAGAGAAGGTTGTCCCAGTAGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTCTTGACTAACTTGAGGATTGAGTCTGAAAAGGATGGTCGTGAAGCTTGTAACATTCTTCATGCTGCCGGACCGCCAATGGTTGTGCTTACAAGCATAAATATCAATGGTAATCTTTTTCTAATTGGTAGCCATCAAAAGGAAAAGGGTCTGTCTCCTGAGCAATTCAAGATTGTGATTCCTAAAATTCCTGCATATTTCACGGGAACAGGAGATCTTACAACTGCACTTCTACTTGGGTGGAGCAATAAATATCCTGACAACCTGGACAAGGCAGCCGAGCTTGCTGTATCATCCTTGCAGGCCCTTCTACAGAGGACAATTAACGACTACAAAAGTGCCGGCCATGATCCCAAGTCAAGCAGTTTAGAGATTCGATTAATCCAAAGTCAGAACGACATTCGTAACCCCGAAATTAAATTCAGAGCCGAAAGATACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

344

Amino Acids

38.24

Weight (kDa)

7.1

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	4 cut(s)	236, 249, 467, 932
AcoI	YGGCCR	1 cut(s)	931
AcsI	RAATTY	3 cut(s)	97, 774, 1007
AfiI	CCNNNNNNNGG	5 cut(s)	73, 127, 482, 727, 859
AgsI	TTSAA	6 cut(s)	167, 307, 344, 558, 581, 757
AjnI	CCWGG	2 cut(s)	180, 852
AluBI	AGCT	9 cut(s)	19, 81, 90, 206, 319, 499, 554, 635, 871
AluI	AGCT	9 cut(s)	19, 81, 90, 206, 319, 499, 554, 635, 871
Alw21I	GWGCWC	2 cut(s)	21, 413
Alw26I	GTCTC	2 cut(s)	137, 747
AlwI	GGATC	4 cut(s)	236, 249, 467, 932
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	3 cut(s)	337, 891, 931
ApeKI	GCWGC	2 cut(s)	653, 863
ApoI	RAATTY	3 cut(s)	97, 774, 1007
AseI	ATTAAT	2 cut(s)	249, 968
AspS9I	GGNCC	2 cut(s)	659, 892
AsuHPI	GGTGA	1 cut(s)	497
AsuII	TTCGAA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	659
BamHI	GGATCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	21, 413
BbvI	GCAGC	2 cut(s)	640, 875
BccI	CCATC	3 cut(s)	475, 617, 729
BciT130I	CCWGG	2 cut(s)	182, 854
BciVI	GTATCC	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	137, 747
BfmI	CTRYAG	1 cut(s)	899
BfuI	GTATCC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	2 cut(s)	654, 864
BlsI	GCNGC	2 cut(s)	655, 865
Bme1390I	CCNGG	2 cut(s)	182, 854
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	659, 892
BmiI	GGNNCC	2 cut(s)	111, 243
BmrFI	CCNGG	2 cut(s)	182, 854
BmrI	ACTGGG	1 cut(s)	542
BmuI	ACTGGG	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	112, 622
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	126, 181
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 127, 482, 727, 859
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	5 cut(s)	151, 259, 476, 548, 574
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	182, 854
BseDI	CCNNGG	2 cut(s)	126, 181
BseGI	GGATG	2 cut(s)	628, 881
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	5 cut(s)	73, 127, 482, 727, 859
BseMII	CTCAG	3 cut(s)	6, 149, 738
BseNI	ACTGG	5 cut(s)	151, 259, 476, 548, 574
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	640, 875
BsgI	GTGCAG	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	339, 893, 933
BsiHKAI	GWGCWC	2 cut(s)	21, 413
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	657, 930
BslFI	GGGAC	2 cut(s)	491, 530
BslI	CCNNNNNNNGG	5 cut(s)	73, 127, 482, 727, 859
BsmAI	GTCTC	2 cut(s)	137, 747
BsmFI	GGGAC	2 cut(s)	491, 530
BsnI	GGCC	3 cut(s)	339, 893, 933
BsoBI	CYCGRG	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	21, 413
Bsp143I	GATC	4 cut(s)	241, 472, 802, 937
Bsp68I	TCGCGA	1 cut(s)	85
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	3 cut(s)	339, 893, 933
BspCNI	CTCAG	3 cut(s)	7, 150, 739
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	111, 243
BspPI	GGATC	4 cut(s)	236, 249, 467, 932
BspT104I	TTCGAA	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	5 cut(s)	151, 259, 476, 548, 574
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	2 cut(s)	126, 181
BssMI	GATC	4 cut(s)	241, 472, 802, 937
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	182, 854
Bst4CI	ACNGT	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	6 cut(s)	21, 25, 83, 873, 891, 931
BstDEI	CTNAG	3 cut(s)	15, 158, 747
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	628, 881
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	4 cut(s)	244, 475, 805, 940
BstMAI	GTCTC	2 cut(s)	137, 747
BstMBI	GATC	4 cut(s)	241, 472, 802, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 872
BstNI	CCWGG	2 cut(s)	182, 854
BstSCI	CCNGG	2 cut(s)	180, 852
BstSFI	CTRYAG	1 cut(s)	899
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	640, 875
BstX2I	RGATCY	2 cut(s)	241, 802
BstYI	RGATCY	2 cut(s)	241, 802
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	339, 893, 933
BtsCI	GGATG	2 cut(s)	628, 881
BtsIMutI	CAGTG	1 cut(s)	483
BtuMI	TCGCGA	1 cut(s)	85
Cac8I	GCNNGC	6 cut(s)	21, 25, 83, 873, 891, 931
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	659, 892
CpoI	CGGWCCG	1 cut(s)	659
CspI	CGGWCCG	1 cut(s)	659
CviAII	CATG	2 cut(s)	650, 935
DdeI	CTNAG	3 cut(s)	15, 158, 747
DpnI	GATC	4 cut(s)	243, 474, 804, 939
DpnII	GATC	4 cut(s)	241, 472, 802, 937
EaeI	YGGCCR	1 cut(s)	931
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	659
Eco53kI	GAGCTC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	19
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	2 cut(s)	180, 852
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	653, 938
FalI	AAGNNNNNCTT	1 cut(s)	1012
FaqI	GGGAC	2 cut(s)	491, 530
FatI	CATG	2 cut(s)	649, 934
Fnu4HI	GCNGC	2 cut(s)	654, 864
FokI	GGATG	2 cut(s)	635, 868
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	654, 864
GluI	GCNGC	2 cut(s)	654, 864
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	339, 893, 933
HapII	CCGG	2 cut(s)	657, 930
Hin1II	CATG	2 cut(s)	653, 938
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	2 cut(s)	88, 633
HinfI	GANTC	4 cut(s)	565, 611, 766, 961
HpaII	CCGG	2 cut(s)	657, 930
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	448, 564
Hpy188I	TCNGA	8 cut(s)	16, 35, 68, 142, 159, 616, 981, 1013
Hpy8I	GTNNAC	2 cut(s)	448, 564
HpyAV	CCTTC	5 cut(s)	63, 329, 485, 532, 905
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	220, 782, 815, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 872
HpyF3I	CTNAG	3 cut(s)	15, 158, 747
Hsp92II	CATG	2 cut(s)	653, 938
KroI	GCCGGC	1 cut(s)	929
KroNI	GCCGGC	1 cut(s)	931
Kzo9I	GATC	4 cut(s)	241, 472, 802, 937
LmnI	GCTCC	2 cut(s)	115, 831
Lsp1109I	GCAGC	2 cut(s)	640, 875
MaeIII	GTNAC	2 cut(s)	638, 992
MalI	GATC	4 cut(s)	243, 474, 804, 939
MboI	GATC	4 cut(s)	241, 472, 802, 937
MboII	GAAGA	2 cut(s)	356, 638
MflI	RGATCY	2 cut(s)	241, 802
MhlI	GDGCHC	2 cut(s)	21, 413
MlyI	GAGTC	2 cut(s)	559, 620
MnlI	CCTC	6 cut(s)	123, 148, 415, 519, 597, 897
MroNI	GCCGGC	1 cut(s)	929
MseI	TTAA	8 cut(s)	249, 291, 377, 459, 912, 968, 1005, 1030
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	657, 930
MspR9I	CCNGG	2 cut(s)	182, 854
MvaI	CCWGG	2 cut(s)	182, 854
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	87, 872
NaeI	GCCGGC	1 cut(s)	931
NdeII	GATC	4 cut(s)	241, 472, 802, 937
NgoMIV	GCCGGC	1 cut(s)	929
NlaIII	CATG	2 cut(s)	653, 938
NlaIV	GGNNCC	2 cut(s)	111, 243
NmeAIII	GCCGAG	1 cut(s)	892
NruI	TCGCGA	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	931
PfeI	GAWTC	2 cut(s)	766, 961
PkrI	GCNGC	2 cut(s)	655, 865
PleI	GAGTC	2 cut(s)	559, 619
PpsI	GAGTC	2 cut(s)	559, 619
PshBI	ATTAAT	2 cut(s)	249, 968
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	180, 852
PspGI	CCWGG	2 cut(s)	180, 852
PspN4I	GGNNCC	2 cut(s)	111, 243
PspPI	GGNCC	2 cut(s)	659, 892
PsuI	RGATCY	2 cut(s)	241, 802
PvuII	CAGCTG	1 cut(s)	206
RruI	TCGCGA	1 cut(s)	85
Rsr2I	CGGWCCG	1 cut(s)	659
RsrII	CGGWCCG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	8 cut(s)	249, 291, 377, 459, 912, 968, 1005, 1030
SatI	GCNGC	2 cut(s)	654, 864
Sau3AI	GATC	4 cut(s)	241, 472, 802, 937
Sau96I	GGNCC	2 cut(s)	659, 892
SchI	GAGTC	2 cut(s)	559, 620
ScrFI	CCNGG	2 cut(s)	182, 854
SduI	GDGCHC	2 cut(s)	21, 413
SfcI	CTRYAG	1 cut(s)	899
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	91, 601
SmoI	CTYRAG	2 cut(s)	91, 601
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	662
SstI	GAGCTC	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	180, 852
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	4 cut(s)	101, 151, 532, 964
TfiI	GAWTC	2 cut(s)	766, 961
Tru1I	TTAA	8 cut(s)	249, 291, 377, 459, 912, 968, 1005, 1030
Tru9I	TTAA	8 cut(s)	249, 291, 377, 459, 912, 968, 1005, 1030
TscAI	CASTG	1 cut(s)	483
TseI	GCWGC	2 cut(s)	653, 863
TspDTI	ATGAA	2 cut(s)	504, 638
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	659
VspI	ATTAAT	2 cut(s)	249, 968
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	3 cut(s)	97, 774, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.