Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

54100060 .. 54106898

Gene Structure 6839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGTGATGAAGGAAAGCTGTATGTCCCTCCAGAGCTGGTATCTGTATATCGTGAAAAGGTTGTCCCTGTTGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAATTGTTGACCAACTCCAGGATTGAGTCTGAAAGAGATGGCCGTGAAGCTTGTAACATTCTTCACGCTGCTGGACCTTCAATGGTTGTGATAACAAGCATAAATATAGATGGTAATCTTCTTCTAATTGGTAGTCATCAAAAGGAACAAGGTCTGTCTCCAGAGCAATTCAAGATTGTGATTCCTAAGATTCCTGCGTATTTCACGGGAACAGGAGATCTTACAACTGCGCTTCTACTTGGTTGGAGTAATAAATATCCTAACAACCTAGATAAGGCTGCGGAGCTTGCTGTATCAACCTTGCAGGCCCTTCTGCAGAGAACAGTAAATGATTATAAAACTGCTGGCCATGATCCCCAGTCAACCAGTTTAGAGATTCGATTAATACAAAGTCAAGATGACATTCGTCAACCTCAGATTAAATTCAGAGCTGAAAGATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

183

Amino Acids

20.26

Weight (kDa)

5.41

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	4 - 79	4.4e-10	Phosphomethylpyrimidine kinase
PfkB	PF00294	19 - 78	2.8e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	2 cut(s)	145, 451
AcsI	RAATTY	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	123, 379
AgsI	TTSAA	4 cut(s)	78, 101, 186, 277
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	5 cut(s)	19, 37, 155, 391, 536
AluI	AGCT	5 cut(s)	19, 37, 155, 391, 536
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	452
AoxI	GGCC	3 cut(s)	145, 411, 451
ApeKI	GCWGC	2 cut(s)	173, 383
ApoI	RAATTY	1 cut(s)	527
AseI	ATTAAT	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	179, 412
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	160, 370
BccI	CCATC	2 cut(s)	137, 209
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	419
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	2 cut(s)	174, 384
BlsI	GCNGC	2 cut(s)	175, 385
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	179, 412
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	457
BoxI	GACNNNNGTC	1 cut(s)	510
BpmI	CTGGAG	3 cut(s)	15, 106, 249
BsaBI	GATNNNNATC	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 379
Bse1I	ACTGG	3 cut(s)	94, 463, 471
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	123, 379
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	3 cut(s)	94, 463, 471
BseXI	GCAGC	2 cut(s)	160, 370
BshFI	GGCC	3 cut(s)	147, 413, 453
BslFI	GGGAC	2 cut(s)	11, 50
BslI	CCNNNNNNNGG	2 cut(s)	123, 379
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	11, 50
BsnI	GGCC	3 cut(s)	147, 413, 453
Bsp143I	GATC	2 cut(s)	322, 457
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	147, 413, 453
BspCNI	CTCAG	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	452
BsrI	ACTGG	3 cut(s)	94, 463, 471
BssMI	GATC	2 cut(s)	322, 457
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	393, 411, 451
BstDEI	CTNAG	2 cut(s)	291, 519
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	325, 460
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	322, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	160, 370
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	147, 413, 453
Cac8I	GCNNGC	3 cut(s)	393, 411, 451
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	179, 412
CviAII	CATG	1 cut(s)	455
CviJI	RGCY	9 cut(s)	19, 37, 147, 155, 383, 391, 413, 453, 536
CviKI_1	RGCY	9 cut(s)	19, 37, 147, 155, 383, 391, 413, 453, 536
DdeI	CTNAG	2 cut(s)	291, 519
DpnI	GATC	2 cut(s)	324, 459
DpnII	GATC	2 cut(s)	322, 457
EaeI	YGGCCR	2 cut(s)	145, 451
Eco47I	GGWCC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	122
FaeI	CATG	1 cut(s)	458
FaiI	YATR	7 cut(s)	24, 49, 206, 212, 441, 456, 546
FaqI	GGGAC	2 cut(s)	11, 50
FatI	CATG	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	174, 384
Fsp4HI	GCNGC	2 cut(s)	174, 384
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	2 cut(s)	174, 384
GsuI	CTGGAG	3 cut(s)	15, 106, 249
HaeIII	GGCC	3 cut(s)	147, 413, 453
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	4 cut(s)	84, 114, 468, 515
HindII	GTYRAC	4 cut(s)	84, 114, 468, 515
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	5 cut(s)	85, 131, 286, 295, 481
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	4 cut(s)	84, 114, 468, 515
Hpy188I	TCNGA	3 cut(s)	136, 522, 533
Hpy188III	TCNNGA	5 cut(s)	32, 53, 266, 277, 500
Hpy8I	GTNNAC	4 cut(s)	84, 114, 468, 515
HpyAV	CCTTC	3 cut(s)	5, 192, 425
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	2 cut(s)	409, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	291, 519
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	322, 457
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	160, 370
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	324, 459
MboI	GATC	2 cut(s)	322, 457
MboII	GAAGA	3 cut(s)	158, 215, 218
MflI	RGATCY	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	4 cut(s)	107, 231, 272, 527
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	79, 140
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	2 cut(s)	39, 528
Mox20I	TGGCCA	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	2 cut(s)	488, 525
Msp20I	TGGCCA	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	322, 457
NlaIII	CATG	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	286, 295, 481
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	175, 385
PleI	GAGTC	2 cut(s)	79, 139
PpsI	GAGTC	2 cut(s)	79, 139
PshAI	GACNNNNGTC	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	179, 412
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	488, 525
SatI	GCNGC	2 cut(s)	174, 384
Sau3AI	GATC	2 cut(s)	322, 457
Sau96I	GGNCC	2 cut(s)	179, 412
SchI	GAGTC	2 cut(s)	79, 140
ScrFI	CCNGG	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	4 cut(s)	107, 231, 272, 527
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	484
TasI	AATT	4 cut(s)	107, 231, 272, 527
TfiI	GAWTC	3 cut(s)	286, 295, 481
Tru1I	TTAA	2 cut(s)	488, 525
Tru9I	TTAA	2 cut(s)	488, 525
TseI	GCWGC	2 cut(s)	173, 383
TspDTI	ATGAA	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	527
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.