Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

16678323 .. 16685866

Gene Structure 7544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24900.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCCCTCCTCCCATCCTTTCCTTGGCTCTGCCGTCTGAGACTGGTCGAGTTCTTAGTATCCAATCCCACACAGTTCAGGGATATGTTGGGAATAAATCAGCTGTGTTCCCCCTGCAATTATTAGGCTATGATGTCGATCCAATTAATTCTGTCCAGTTCTCAAACCACACAGGATACCCAACATTTAAGGGTCAAGTTTTAAATGGAGAACAGCTTTGGGAATTGATACAAGGCCTAGAATCAAATGATCTATTATACTACACTCATTTATTAACAGGTTATATTGGTTCAGTTTCTTTTCTGAGCACTGTATTGGAAGTTGTCAATAAACTTCGCTCTGTAAACCCAAAACTTAGATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTCCCTCCAGAGCTGGTATCTGTATACCGTGAAAAGGTTGTCCCTGTTGCTTCAATGTTGACCCCCAACCAATTTGAAGCAGAATTGTTGACCAACTCAAGAATTGTTTCTGAATGTGATGGCCGCAAAGCTTGTAATATTCTTCACGCTGCAGGACCATCAATGGTTGTGATAACAAGCATAAATATAGATGGCAATCTTCTTCTTATTGGTAGTCATCAAAAGGAACAAGGTCTGTCTCCAGAACAATTCAAGATTGTGATTCCTAAGATTCCTGCCTATTTCACGGGAACTGGAGATCTTACAACTGCGCTTCTACTTGGGTGGAGTAATAAATATCCTGACAACCTAGACAAGGCAGCAGAGCTTGCTGTATCATCCTTGCAGGCCCTTTTGCAGAGGACAGTAAATGATTATAAAAGTGCCGGCCATGACCCCAAGTCAACCAGTTTAGAGATTCGATTGATACAAAGTCAGGATAATATTCGTCAACCTCAGATTAAATTCAGAGCTGAAAGATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

310

Amino Acids

34.01

Weight (kDa)

6.09

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	93 - 198	2.6e-13	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	2 cut(s)	134, 365
AcoI	YGGCCR	2 cut(s)	523, 829
AcsI	RAATTY	1 cut(s)	905
AfiI	CCNNNNNNNGG	4 cut(s)	25, 380, 436, 757
AgsI	TTSAA	3 cut(s)	456, 479, 655
AhdI	GACNNNNNGTC	1 cut(s)	841
AluBI	AGCT	7 cut(s)	104, 217, 397, 415, 533, 769, 914
AluI	AGCT	7 cut(s)	104, 217, 397, 415, 533, 769, 914
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	35, 645
AlwI	GGATC	2 cut(s)	134, 365
AoxI	GGCC	5 cut(s)	3, 235, 523, 789, 829
ApeKI	GCWGC	2 cut(s)	551, 761
ApoI	RAATTY	1 cut(s)	905
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	3 cut(s)	4, 557, 790
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	538, 773
BccI	CCATC	5 cut(s)	23, 373, 515, 568, 587
BceAI	ACGGC	1 cut(s)	19
BciVI	GTATCC	2 cut(s)	71, 170
BcoDI	GTCTC	2 cut(s)	35, 645
BfaI	CTAG	2 cut(s)	239, 752
BfmI	CTRYAG	1 cut(s)	552
BfuI	GTATCC	2 cut(s)	71, 170
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	3 cut(s)	526, 552, 762
BlsI	GCNGC	3 cut(s)	527, 553, 763
Bme18I	GGWCC	1 cut(s)	557
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmgT120I	GGNCC	3 cut(s)	4, 557, 790
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	3 cut(s)	393, 627, 717
BpuEI	CTTGAG	1 cut(s)	484
BsaBI	GATNNNNATC	2 cut(s)	138, 597
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 380, 436, 757
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	5 cut(s)	49, 157, 374, 700, 849
Bse8I	GATNNNNATC	2 cut(s)	138, 597
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	15, 779
BseJI	GATNNNNATC	2 cut(s)	138, 597
BseLI	CCNNNNNNNGG	4 cut(s)	25, 380, 436, 757
BseMII	CTCAG	3 cut(s)	30, 296, 911
BseNI	ACTGG	5 cut(s)	49, 157, 374, 700, 849
BseXI	GCAGC	2 cut(s)	538, 773
BshFI	GGCC	5 cut(s)	5, 237, 525, 791, 831
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	828
BslFI	GGGAC	2 cut(s)	389, 428
BslI	CCNNNNNNNGG	4 cut(s)	25, 380, 436, 757
BsmAI	GTCTC	2 cut(s)	35, 645
BsmFI	GGGAC	2 cut(s)	389, 428
BsnI	GGCC	5 cut(s)	5, 237, 525, 791, 831
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	139, 250, 370, 700
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	5 cut(s)	5, 237, 525, 791, 831
BspCNI	CTCAG	3 cut(s)	31, 297, 910
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	2 cut(s)	134, 365
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	5 cut(s)	49, 157, 374, 700, 849
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	139, 250, 370, 700
BssNAI	GTATAC	1 cut(s)	427
BssT1I	CCWWGG	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	427
Bst4CI	ACNGT	4 cut(s)	76, 313, 431, 808
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	771, 789, 829
BstDEI	CTNAG	6 cut(s)	39, 56, 305, 356, 669, 897
BstENI	CCTNNNNNAGG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	15, 779
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	4 cut(s)	142, 253, 373, 703
BstMAI	GTCTC	2 cut(s)	35, 645
BstMBI	GATC	4 cut(s)	139, 250, 370, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	538, 773
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BstZ17I	GTATAC	1 cut(s)	427
BsuI	GTATCC	2 cut(s)	71, 170
BsuRI	GGCC	5 cut(s)	5, 237, 525, 791, 831
BtsCI	GGATG	2 cut(s)	15, 779
BtsIMutI	CAGTG	2 cut(s)	309, 381
Cac8I	GCNNGC	3 cut(s)	771, 789, 829
CfoI	GCGC	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	3 cut(s)	4, 557, 790
CviAII	CATG	1 cut(s)	833
DdeI	CTNAG	6 cut(s)	39, 56, 305, 356, 669, 897
DpnI	GATC	4 cut(s)	141, 252, 372, 702
DpnII	GATC	4 cut(s)	139, 250, 370, 700
DraI	TTTAAA	1 cut(s)	204
DriI	GACNNNNNGTC	1 cut(s)	841
EaeI	YGGCCR	2 cut(s)	523, 829
Eam1105I	GACNNNNNGTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	836
FaqI	GGGAC	2 cut(s)	389, 428
FatI	CATG	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	526, 552, 762
FokI	GGATG	2 cut(s)	2, 766
Fsp4HI	GCNGC	3 cut(s)	526, 552, 762
FspBI	CTAG	2 cut(s)	239, 752
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	3 cut(s)	526, 552, 762
GsuI	CTGGAG	3 cut(s)	393, 627, 717
HaeIII	GGCC	5 cut(s)	5, 237, 525, 791, 831
HapII	CCGG	1 cut(s)	828
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	1 cut(s)	836
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	4 cut(s)	462, 492, 846, 893
HindII	GTYRAC	4 cut(s)	462, 492, 846, 893
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	4 cut(s)	242, 664, 673, 859
HpaII	CCGG	1 cut(s)	828
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	6 cut(s)	346, 427, 462, 492, 846, 893
Hpy188I	TCNGA	5 cut(s)	40, 306, 514, 900, 911
Hpy188III	TCNNGA	6 cut(s)	410, 501, 644, 655, 743, 878
Hpy8I	GTNNAC	6 cut(s)	346, 427, 462, 492, 846, 893
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	4 cut(s)	76, 313, 431, 808
HpyCH4V	TGCA	4 cut(s)	118, 554, 787, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	6 cut(s)	39, 56, 305, 356, 669, 897
Hsp92II	CATG	1 cut(s)	836
HspAI	GCGC	1 cut(s)	713
KroI	GCCGGC	1 cut(s)	827
KroNI	GCCGGC	1 cut(s)	829
Kzo9I	GATC	4 cut(s)	139, 250, 370, 700
Lsp1109I	GCAGC	2 cut(s)	538, 773
MaeI	CTAG	2 cut(s)	239, 752
MalI	GATC	4 cut(s)	141, 252, 372, 702
MboI	GATC	4 cut(s)	139, 250, 370, 700
MboII	GAAGA	3 cut(s)	536, 593, 596
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	9 cut(s)	119, 144, 148, 224, 473, 485, 504, 650, 905
MnlI	CCTC	5 cut(s)	18, 21, 417, 795, 906
MroNI	GCCGGC	1 cut(s)	827
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	5 cut(s)	147, 189, 203, 275, 903
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	828
MwoI	GCNNNNNNNGC	1 cut(s)	770
NaeI	GCCGGC	1 cut(s)	829
NdeII	GATC	4 cut(s)	139, 250, 370, 700
NgoMIV	GCCGGC	1 cut(s)	827
NlaIII	CATG	1 cut(s)	836
NlaIV	GGNNCC	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	4 cut(s)	242, 664, 673, 859
PkrI	GCNGC	3 cut(s)	527, 553, 763
PshBI	ATTAAT	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	819
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	4, 557, 790
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	104
SaqAI	TTAA	5 cut(s)	147, 189, 203, 275, 903
SatI	GCNGC	3 cut(s)	526, 552, 762
Sau3AI	GATC	4 cut(s)	139, 250, 370, 700
Sau96I	GGNCC	3 cut(s)	4, 557, 790
SduI	GDGCHC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	9 cut(s)	119, 144, 148, 224, 473, 485, 504, 650, 905
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	526
SspI	AATATT	2 cut(s)	541, 886
SspMI	CTAG	2 cut(s)	239, 752
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	76, 313, 431, 808
TaqI	TCGA	3 cut(s)	49, 138, 862
TasI	AATT	9 cut(s)	119, 144, 148, 224, 473, 485, 504, 650, 905
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	4 cut(s)	242, 664, 673, 859
Tru1I	TTAA	5 cut(s)	147, 189, 203, 275, 903
Tru9I	TTAA	5 cut(s)	147, 189, 203, 275, 903
TscAI	CASTG	2 cut(s)	316, 381
TseI	GCWGC	2 cut(s)	551, 761
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	316, 381
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	755
XapI	RAATTY	1 cut(s)	905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	2 cut(s)	239, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.