Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028505.1

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5225

Gene Structure 5225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 650 bp

gttatattggttcagtttcttttctgagcactgtattggaagttgtcaataaacttcgctctataaacccaaaacttagatatgtctgtgatccagtgatgggtgatgaaggaaagctgtatgtccctccagagctggtatctgtatatcgtgaaaaggttgtccctgttgcttcaatgttgactcccaaccagtttgaagcagaattgttgaccaactccaggattgagtctgaaagagatggccgtgaagcttgtaacattcttcacgctgctggaccatcaatggttgtgataacaagcataaatatagatggtaatcttcttctaattggtagtcatcaaaaggaacaaggtctgtctccagaacaattcaagattgtgattcctaagattcctgcgtatttcacgggtacaggagatcttacaactgcgcttctacttggttggagtaataaatatcctaacaacctagataaggctgcggagcttgctgtatcaactgtgcaggcccttctgcagagaacagtaaatgattataaaactgctggccatgatccccagtcaaccagtttagagattcgattaatacaaagtcaggatgacattcgtcaacctgagattaaattcagagctgaaagatatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

215

Amino Acids

23.84

Weight (kDa)

5.69

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	2 cut(s)	85, 550
AcoI	YGGCCR	2 cut(s)	243, 549
AcsI	RAATTY	1 cut(s)	625
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	100, 221, 477
AgsI	TTSAA	3 cut(s)	176, 199, 375
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	117, 135, 253, 489, 634
AluI	AGCT	5 cut(s)	117, 135, 253, 489, 634
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	85, 550
AoxI	GGCC	3 cut(s)	243, 509, 549
ApeKI	GCWGC	2 cut(s)	271, 481
ApoI	RAATTY	1 cut(s)	625
AseI	ATTAAT	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	277, 510
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	258, 468
BccI	CCATC	4 cut(s)	93, 235, 288, 307
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	472
BfmI	CTRYAG	1 cut(s)	517
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	2 cut(s)	272, 482
BlsI	GCNGC	2 cut(s)	273, 483
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 510
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	555
BoxI	GACNNNNGTC	1 cut(s)	608
BpmI	CTGGAG	3 cut(s)	113, 204, 347
BsaBI	GATNNNNATC	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 221, 477
Bse1I	ACTGG	4 cut(s)	94, 192, 561, 569
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	606
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	3 cut(s)	100, 221, 477
BseMII	CTCAG	2 cut(s)	16, 608
BseNI	ACTGG	4 cut(s)	94, 192, 561, 569
BseXI	GCAGC	2 cut(s)	258, 468
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	245, 511, 551
BsiHKAI	GWGCWC	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	109, 148
BslI	CCNNNNNNNGG	3 cut(s)	100, 221, 477
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	109, 148
BsnI	GGCC	3 cut(s)	245, 511, 551
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	90, 420, 555
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	3 cut(s)	245, 511, 551
BspCNI	CTCAG	2 cut(s)	17, 609
BspMAI	CTGCAG	1 cut(s)	521
BspPI	GGATC	2 cut(s)	85, 550
BsrI	ACTGG	4 cut(s)	94, 192, 561, 569
BssMI	GATC	3 cut(s)	90, 420, 555
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	33, 504, 528
BstC8I	GCNNGC	3 cut(s)	491, 509, 549
BstDEI	CTNAG	4 cut(s)	25, 76, 389, 617
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	93, 423, 558
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	90, 420, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	258, 468
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	245, 511, 551
BtsCI	GGATG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	29, 101
Cac8I	GCNNGC	3 cut(s)	491, 509, 549
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	277, 510
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	1 cut(s)	553
CviJI	RGCY	9 cut(s)	117, 135, 245, 253, 481, 489, 511, 551, 634
CviKI_1	RGCY	9 cut(s)	117, 135, 245, 253, 481, 489, 511, 551, 634
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	25, 76, 389, 617
DpnI	GATC	3 cut(s)	92, 422, 557
DpnII	GATC	3 cut(s)	90, 420, 555
EaeI	YGGCCR	2 cut(s)	243, 549
Eco47I	GGWCC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	556
FaqI	GGGAC	2 cut(s)	109, 148
FatI	CATG	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	272, 482
FokI	GGATG	1 cut(s)	613
Fsp4HI	GCNGC	2 cut(s)	272, 482
FspBI	CTAG	1 cut(s)	472
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	2 cut(s)	272, 482
GsuI	CTGGAG	3 cut(s)	113, 204, 347
HaeIII	GGCC	3 cut(s)	245, 511, 551
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	4 cut(s)	182, 212, 566, 613
HindII	GTYRAC	4 cut(s)	182, 212, 566, 613
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	5 cut(s)	183, 229, 384, 393, 579
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	4 cut(s)	182, 212, 566, 613
Hpy188I	TCNGA	3 cut(s)	26, 234, 631
Hpy188III	TCNNGA	5 cut(s)	130, 151, 364, 375, 598
Hpy8I	GTNNAC	4 cut(s)	182, 212, 566, 613
HpyAV	CCTTC	2 cut(s)	103, 523
HpyCH4III	ACNGT	3 cut(s)	33, 504, 528
HpyCH4V	TGCA	2 cut(s)	507, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	4 cut(s)	25, 76, 389, 617
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	90, 420, 555
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	2 cut(s)	258, 468
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	92, 422, 557
MboI	GATC	3 cut(s)	90, 420, 555
MboII	GAAGA	3 cut(s)	256, 313, 316
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	4 cut(s)	205, 329, 370, 625
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	2 cut(s)	177, 238
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	2 cut(s)	586, 623
Msp20I	TGGCCA	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	490
NdeII	GATC	3 cut(s)	90, 420, 555
NlaIII	CATG	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	384, 393, 579
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	273, 483
PleI	GAGTC	2 cut(s)	177, 237
PpsI	GAGTC	2 cut(s)	177, 237
PshAI	GACNNNNGTC	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	277, 510
PstI	CTGCAG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	586, 623
SatI	GCNGC	2 cut(s)	272, 482
Sau3AI	GATC	3 cut(s)	90, 420, 555
Sau96I	GGNCC	2 cut(s)	277, 510
SchI	GAGTC	2 cut(s)	177, 238
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	9 cut(s)	119, 137, 161, 255, 357, 473, 491, 618, 636
SfcI	CTRYAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	4 cut(s)	205, 329, 370, 625
SsiI	CCGC	1 cut(s)	484
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	33, 504, 528
TaqI	TCGA	1 cut(s)	582
TasI	AATT	4 cut(s)	205, 329, 370, 625
TfiI	GAWTC	3 cut(s)	384, 393, 579
Tru1I	TTAA	2 cut(s)	586, 623
Tru9I	TTAA	2 cut(s)	586, 623
TscAI	CASTG	2 cut(s)	36, 101
TseI	GCWGC	2 cut(s)	271, 481
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	36, 101
VpaK11BI	GGWCC	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	586
XagI	CCTNNNNNAGG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	625
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.