Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Reverse (-)

31974489 .. 31982920

Gene Structure 8432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG285100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTCCTCCTCCCATCCTTTCGTTGGCTCTGCCTTCCGAGACTGGTCGAGTTCTCAGTATCCAATCCCACACTGTTCAGGGATATGTTGGGAATAAATCAGCTGTGTTCCCCCTGCAATTATTAGGCTATGATGTGGATCCAATTAATTCTGTCCAGTTCTCAAACCACACAGGATACCCAACATTTAAGGGTCAAGTTTTAAATGGAGAACAGCTTTGGGAATTGATACAAGGCCTTGAATCAAATGATCTATTATACTACACTCATTTATTAACAGGTTATATTGGTTCAGTTTCTTTTCTGAGCACTGTATTGGAAGTTGTCAATAAACTTCGCTCTATAAACCCAAAACTTAGATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTCCCTCCAGAGCTGGTATCTGTATATCGTGAAAAGGTTGTCCCTGTTGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAATTGTTGACCAACTCCAGGATTGAGTCCGAAAGAGATGGCCGTGAAGCTTGTAACATTCTTCACGCTGCTGGACCATCAATGGTTGTGATAACAAGCATAAATATAGATGGTAATCTTCTTCTAATTGGTAGTCATCAAAAGGAACAAGTGAGTTCTCCTCGGGCTTCAAACCTTGGTCATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

223

Amino Acids

24.4

Weight (kDa)

5.48

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	93 - 199	1.4e-14	Phosphomethylpyrimidine kinase
PfkB	PF00294	145 - 193	6.8e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	134, 147, 365
AcoI	YGGCCR	1 cut(s)	523
AfiI	CCNNNNNNNGG	3 cut(s)	25, 380, 501
AgsI	TTSAA	4 cut(s)	242, 456, 479, 654
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	5 cut(s)	104, 217, 397, 415, 533
AluI	AGCT	5 cut(s)	104, 217, 397, 415, 533
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	3 cut(s)	134, 147, 365
Ama87I	CYCGRG	1 cut(s)	645
AoxI	GGCC	2 cut(s)	235, 523
ApeKI	GCWGC	1 cut(s)	551
AseI	ATTAAT	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	5 cut(s)	23, 373, 515, 568, 587
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	1 cut(s)	502
BciVI	GTATCC	2 cut(s)	71, 170
BcoDI	GTCTC	1 cut(s)	35
BfuI	GTATCC	2 cut(s)	71, 170
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	2 cut(s)	6, 141
BmrFI	CCNGG	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	2 cut(s)	393, 484
BsaBI	GATNNNNATC	2 cut(s)	138, 597
BsaJI	CCNNGG	2 cut(s)	644, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 380, 501
Bse1I	ACTGG	4 cut(s)	49, 157, 374, 472
Bse8I	GATNNNNATC	2 cut(s)	138, 597
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	644, 658
BseGI	GGATG	1 cut(s)	15
BseJI	GATNNNNATC	2 cut(s)	138, 597
BseLI	CCNNNNNNNGG	3 cut(s)	25, 380, 501
BseMII	CTCAG	2 cut(s)	70, 296
BseNI	ACTGG	4 cut(s)	49, 157, 374, 472
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	1 cut(s)	538
BshFI	GGCC	2 cut(s)	237, 525
BsiHKAI	GWGCWC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	645
BslFI	GGGAC	2 cut(s)	389, 428
BslI	CCNNNNNNNGG	3 cut(s)	25, 380, 501
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	389, 428
BsnI	GGCC	2 cut(s)	237, 525
BsoBI	CYCGRG	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	139, 250, 370
BspANI	GGCC	2 cut(s)	237, 525
BspCNI	CTCAG	2 cut(s)	69, 297
BspLI	GGNNCC	2 cut(s)	6, 141
BspPI	GGATC	3 cut(s)	134, 147, 365
BsrI	ACTGG	4 cut(s)	49, 157, 374, 472
BssECI	CCNNGG	2 cut(s)	644, 658
BssMI	GATC	3 cut(s)	139, 250, 370
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	76, 313
BstDEI	CTNAG	3 cut(s)	56, 305, 356
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	3 cut(s)	142, 253, 373
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	139, 250, 370
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	2 cut(s)	71, 170
BsuRI	GGCC	2 cut(s)	237, 525
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	72, 309, 381
Cfr13I	GGNCC	1 cut(s)	557
DdeI	CTNAG	3 cut(s)	56, 305, 356
DpnI	GATC	3 cut(s)	141, 252, 372
DpnII	GATC	3 cut(s)	139, 250, 370
DraI	TTTAAA	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	658
FaqI	GGGAC	2 cut(s)	389, 428
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	552
GsuI	CTGGAG	2 cut(s)	393, 484
HaeIII	GGCC	2 cut(s)	237, 525
HincII	GTYRAC	2 cut(s)	462, 492
HindII	GTYRAC	2 cut(s)	462, 492
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	3 cut(s)	242, 463, 509
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	462, 492
Hpy188I	TCNGA	3 cut(s)	40, 306, 514
Hpy188III	TCNNGA	2 cut(s)	410, 431
Hpy8I	GTNNAC	2 cut(s)	462, 492
HpyAV	CCTTC	2 cut(s)	45, 383
HpyCH4III	ACNGT	2 cut(s)	76, 313
HpyCH4V	TGCA	1 cut(s)	118
HpyF3I	CTNAG	3 cut(s)	56, 305, 356
Kzo9I	GATC	3 cut(s)	139, 250, 370
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	141, 252, 372
MboI	GATC	3 cut(s)	139, 250, 370
MboII	GAAGA	3 cut(s)	536, 593, 596
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	6 cut(s)	119, 144, 148, 224, 485, 609
MlyI	GAGTC	2 cut(s)	457, 518
MnlI	CCTC	4 cut(s)	18, 21, 417, 654
MseI	TTAA	4 cut(s)	147, 189, 203, 275
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	139, 250, 370
NlaIV	GGNNCC	2 cut(s)	6, 141
PceI	AGGCCT	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	500
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	457, 517
PpsI	GAGTC	2 cut(s)	457, 517
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	6, 141
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	147, 189, 203, 275
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	3 cut(s)	139, 250, 370
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	2 cut(s)	457, 518
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	9 cut(s)	106, 219, 283, 399, 417, 441, 535, 660, 671
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	119, 144, 148, 224, 485, 609
SseBI	AGGCCT	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	2 cut(s)	76, 313
TaqI	TCGA	1 cut(s)	49
TasI	AATT	6 cut(s)	119, 144, 148, 224, 485, 609
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	4 cut(s)	147, 189, 203, 275
Tru9I	TTAA	4 cut(s)	147, 189, 203, 275
TscAI	CASTG	3 cut(s)	79, 316, 381
TseI	GCWGC	1 cut(s)	551
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	79, 316, 381
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.