Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Reverse (-)

24560069 .. 24560260

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCACAAGGTGTGATATCATTGAAAAACCAAAGCAGAGGAGGACAGGAGGGTGCTAGTTCACTAAATTCTGTTCCTCTTGTGCCACAGCAAGGTGGATTTCCTGTTCAAAATGCTGCTGCTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATTCTCTCCTGGCACAAGGAGTCATTTCGTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

63

Amino Acids

6.31

Weight (kDa)

5.88

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	67
AdeI	CACNNNGTG	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	25, 110, 187
AjnI	CCWGG	2 cut(s)	142, 162
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
ApeKI	GCWGC	2 cut(s)	116, 119
ApoI	RAATTY	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	103, 106
BciT130I	CCWGG	2 cut(s)	144, 164
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
Bme1390I	CCNGG	2 cut(s)	144, 164
BmrFI	CCNGG	2 cut(s)	144, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	144, 164
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	103, 106
BslI	CCNNNNNNNGG	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	144, 164
BstNI	CCWGG	2 cut(s)	144, 164
BstSCI	CCNGG	2 cut(s)	142, 162
BstV1I	GCAGC	2 cut(s)	103, 106
DraIII	CACNNNGTG	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	142, 162
EcoRV	GATATC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	117, 120
Fsp4HI	GCNGC	2 cut(s)	117, 120
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	2 cut(s)	117, 120
HinfI	GANTC	2 cut(s)	155, 174
Hpy166II	GTNNAC	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	32, 117, 129, 144, 149, 156, 176
Lsp1109I	GCAGC	2 cut(s)	103, 106
MaeI	CTAG	1 cut(s)	57
MluCI	AATT	2 cut(s)	67, 150
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	4 cut(s)	32, 35, 43, 87
MseI	TTAA	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	144, 164
MvaI	CCWGG	2 cut(s)	144, 164
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	118, 121
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	142, 162
PspGI	CCWGG	2 cut(s)	142, 162
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	117, 120
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	144, 164
SetI	ASST	2 cut(s)	13, 97
Sse9I	AATT	2 cut(s)	67, 150
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	142, 162
TasI	AATT	2 cut(s)	67, 150
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	2 cut(s)	116, 119
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.