Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003832.1

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6533

Gene Structure 6533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003832.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atttcgattctgcagaaatcaaaaccgagactcgtcgctaagcgaagcttgagaaattcggaaatggctcctcctcccatcctttccttggctctgccttccgagactggtcgagttctcagtatccaatcccacactgttcagggatatgttgggaataaatcagctgtgttccccctgcaattattaggctatgatgtggatccaattaattctgtccagttctcaaaccacacaggatacccaacatttaagggtcaagttttaaatggagaacagctttgggaattgatacaaggccttgaatcaaatgatctattatactacactcatttattaacaggttatattggttcagtttcttttctgagcactgtattggaagttgtcaataaacttcgctctataaacccaaaacttagatatgtctgtgatccagtgatgggtgatgaaggaaagctgtatgtccctccagagctggtatctgtatatcgtgaaaaggttgtccctgttgcttcaatgttgactcccaaccagtttgaagcagaattgttgaccaactccaggattgagtctgaaagagatggccgtgaagcttgtaacattcttcacgctgctggaccatcaatggttgtgataacaagcataaatatagatggtaatcttcttctaattggtagtcatcaaaaggaacaaggtctgtctccagaacaattcaagattgtgattcctaagattcctgcgtatttcacgggtacaggagatcttacaactgcgcttctacttggttggagtaataaatatcctaacaacctagataaggctgcggagcttgctgtatcaactgtgcaggcccttctgcagagaacagtaaatgattataaaactgctggccatgatccccagtcaaccagtttagagattcgattaatacaaagtcaagatgacattcgtcaacctgagattaaattcagagctgaaagatatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

330

Amino Acids

36.53

Weight (kDa)

6.36

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	4 cut(s)	197, 210, 428, 893
AcoI	YGGCCR	2 cut(s)	586, 892
AcsI	RAATTY	2 cut(s)	55, 968
AfaI	GTAC	1 cut(s)	757
AfiI	CCNNNNNNNGG	4 cut(s)	88, 443, 564, 820
AgsI	TTSAA	4 cut(s)	305, 519, 542, 718
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	8 cut(s)	48, 167, 280, 460, 478, 596, 832, 977
AluI	AGCT	8 cut(s)	48, 167, 280, 460, 478, 596, 832, 977
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	3 cut(s)	22, 98, 708
AlwI	GGATC	4 cut(s)	197, 210, 428, 893
AoxI	GGCC	4 cut(s)	298, 586, 852, 892
ApeKI	GCWGC	2 cut(s)	614, 824
ApoI	RAATTY	2 cut(s)	55, 968
AseI	ATTAAT	2 cut(s)	210, 929
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	2 cut(s)	620, 853
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	894
BamHI	GGATCC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	601, 811
BccI	CCATC	5 cut(s)	86, 436, 578, 631, 650
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	1 cut(s)	565
BciVI	GTATCC	2 cut(s)	134, 233
BcoDI	GTCTC	3 cut(s)	22, 98, 708
BfaI	CTAG	1 cut(s)	815
BfmI	CTRYAG	2 cut(s)	11, 860
BfuI	GTATCC	2 cut(s)	134, 233
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	2 cut(s)	615, 825
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	2 cut(s)	616, 826
Bme1390I	CCNGG	1 cut(s)	565
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	620, 853
BmiI	GGNNCC	2 cut(s)	69, 204
BmrFI	CCNGG	1 cut(s)	565
BmrI	ACTGGG	1 cut(s)	898
BmuI	ACTGGG	1 cut(s)	898
BoxI	GACNNNNGTC	1 cut(s)	951
BpmI	CTGGAG	3 cut(s)	456, 547, 690
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	70
BsaBI	GATNNNNATC	2 cut(s)	201, 660
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 443, 564, 820
Bse1I	ACTGG	6 cut(s)	112, 220, 437, 535, 904, 912
Bse8I	GATNNNNATC	2 cut(s)	201, 660
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	2 cut(s)	201, 660
BseLI	CCNNNNNNNGG	4 cut(s)	88, 443, 564, 820
BseMII	CTCAG	3 cut(s)	133, 359, 951
BseNI	ACTGG	6 cut(s)	112, 220, 437, 535, 904, 912
BseRI	GAGGAG	2 cut(s)	60, 63
BseXI	GCAGC	2 cut(s)	601, 811
BsgI	GTGCAG	1 cut(s)	869
BshFI	GGCC	4 cut(s)	300, 588, 854, 894
BsiHKAI	GWGCWC	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	452, 491
BslI	CCNNNNNNNGG	4 cut(s)	88, 443, 564, 820
BsmAI	GTCTC	3 cut(s)	22, 98, 708
BsmFI	GGGAC	2 cut(s)	452, 491
BsnI	GGCC	4 cut(s)	300, 588, 854, 894
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	5 cut(s)	202, 313, 433, 763, 898
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	4 cut(s)	300, 588, 854, 894
BspCNI	CTCAG	3 cut(s)	132, 360, 952
BspLI	GGNNCC	2 cut(s)	69, 204
BspMAI	CTGCAG	2 cut(s)	15, 864
BspPI	GGATC	4 cut(s)	197, 210, 428, 893
BsrI	ACTGG	6 cut(s)	112, 220, 437, 535, 904, 912
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	5 cut(s)	202, 313, 433, 763, 898
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	4 cut(s)	139, 376, 847, 871
BstC8I	GCNNGC	3 cut(s)	834, 852, 892
BstDEI	CTNAG	6 cut(s)	39, 119, 368, 419, 732, 960
BstENI	CCTNNNNNAGG	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	5 cut(s)	205, 316, 436, 766, 901
BstMAI	GTCTC	3 cut(s)	22, 98, 708
BstMBI	GATC	5 cut(s)	202, 313, 433, 763, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNI	CCWGG	1 cut(s)	565
BstPAI	GACNNNNGTC	1 cut(s)	951
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	2 cut(s)	11, 860
BstV1I	GCAGC	2 cut(s)	601, 811
BstX2I	RGATCY	2 cut(s)	202, 763
BstYI	RGATCY	2 cut(s)	202, 763
BsuI	GTATCC	2 cut(s)	134, 233
BsuRI	GGCC	4 cut(s)	300, 588, 854, 894
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	135, 372, 444
Cac8I	GCNNGC	3 cut(s)	834, 852, 892
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	620, 853
Csp6I	GTAC	1 cut(s)	756
CviAII	CATG	1 cut(s)	896
CviQI	GTAC	1 cut(s)	756
DdeI	CTNAG	6 cut(s)	39, 119, 368, 419, 732, 960
DpnI	GATC	5 cut(s)	204, 315, 435, 765, 900
DpnII	GATC	5 cut(s)	202, 313, 433, 763, 898
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	586, 892
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	899
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	2 cut(s)	452, 491
FatI	CATG	1 cut(s)	895
Fnu4HI	GCNGC	2 cut(s)	615, 825
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	615, 825
FspBI	CTAG	1 cut(s)	815
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	2 cut(s)	615, 825
GsuI	CTGGAG	3 cut(s)	456, 547, 690
HaeIII	GGCC	4 cut(s)	300, 588, 854, 894
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	1 cut(s)	899
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	4 cut(s)	525, 555, 909, 956
HindII	GTYRAC	4 cut(s)	525, 555, 909, 956
HindIII	AAGCTT	2 cut(s)	46, 594
HinfI	GANTC	8 cut(s)	7, 30, 305, 526, 572, 727, 736, 922
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	4 cut(s)	525, 555, 909, 956
Hpy188I	TCNGA	5 cut(s)	61, 103, 369, 577, 974
Hpy188III	TCNNGA	5 cut(s)	473, 494, 707, 718, 941
Hpy8I	GTNNAC	4 cut(s)	525, 555, 909, 956
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	108, 446, 866
HpyCH4III	ACNGT	4 cut(s)	139, 376, 847, 871
HpyCH4V	TGCA	4 cut(s)	13, 181, 850, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	6 cut(s)	39, 119, 368, 419, 732, 960
Hsp92II	CATG	1 cut(s)	899
HspAI	GCGC	1 cut(s)	776
Kzo9I	GATC	5 cut(s)	202, 313, 433, 763, 898
LmnI	GCTCC	2 cut(s)	73, 829
Lsp1109I	GCAGC	2 cut(s)	601, 811
MaeI	CTAG	1 cut(s)	815
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	5 cut(s)	204, 315, 435, 765, 900
MboI	GATC	5 cut(s)	202, 313, 433, 763, 898
MboII	GAAGA	3 cut(s)	599, 656, 659
MflI	RGATCY	2 cut(s)	202, 763
MhlI	GDGCHC	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	894
MluCI	AATT	9 cut(s)	55, 182, 207, 211, 287, 548, 672, 713, 968
MluNI	TGGCCA	1 cut(s)	894
MlyI	GAGTC	3 cut(s)	24, 520, 581
MmeI	TCCRAC	1 cut(s)	770
MnlI	CCTC	3 cut(s)	81, 84, 480
Mox20I	TGGCCA	1 cut(s)	894
MscI	TGGCCA	1 cut(s)	894
MseI	TTAA	6 cut(s)	210, 252, 266, 338, 929, 966
Msp20I	TGGCCA	1 cut(s)	894
MspA1I	CMGCKG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	1 cut(s)	833
NdeII	GATC	5 cut(s)	202, 313, 433, 763, 898
NlaIII	CATG	1 cut(s)	899
NlaIV	GGNNCC	2 cut(s)	69, 204
PceI	AGGCCT	1 cut(s)	300
PfeI	GAWTC	5 cut(s)	7, 305, 727, 736, 922
PfoI	TCCNGGA	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	616, 826
PleI	GAGTC	3 cut(s)	24, 520, 580
PpsI	GAGTC	3 cut(s)	24, 520, 580
PshAI	GACNNNNGTC	1 cut(s)	951
PshBI	ATTAAT	2 cut(s)	210, 929
PsiI	TTATAA	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	69, 204
PspPI	GGNCC	2 cut(s)	620, 853
PstI	CTGCAG	2 cut(s)	15, 864
PsuI	RGATCY	2 cut(s)	202, 763
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	757
RsaNI	GTAC	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	210, 252, 266, 338, 929, 966
SatI	GCNGC	2 cut(s)	615, 825
Sau3AI	GATC	5 cut(s)	202, 313, 433, 763, 898
Sau96I	GGNCC	2 cut(s)	620, 853
SchI	GAGTC	3 cut(s)	24, 520, 581
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	374
SfcI	CTRYAG	2 cut(s)	11, 860
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	9 cut(s)	55, 182, 207, 211, 287, 548, 672, 713, 968
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	827
SspMI	CTAG	1 cut(s)	815
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	139, 376, 847, 871
TaqI	TCGA	3 cut(s)	5, 112, 925
TasI	AATT	9 cut(s)	55, 182, 207, 211, 287, 548, 672, 713, 968
TfiI	GAWTC	5 cut(s)	7, 305, 727, 736, 922
Tru1I	TTAA	6 cut(s)	210, 252, 266, 338, 929, 966
Tru9I	TTAA	6 cut(s)	210, 252, 266, 338, 929, 966
TscAI	CASTG	3 cut(s)	142, 379, 444
TseI	GCWGC	2 cut(s)	614, 824
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	142, 379, 444
VpaK11BI	GGWCC	1 cut(s)	620
VspI	ATTAAT	2 cut(s)	210, 929
XagI	CCTNNNNNAGG	1 cut(s)	818
XapI	RAATTY	2 cut(s)	55, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.