Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Forward (+)

15190143 .. 15191689

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGAGATCATTTAGTGTTGGTGGTTGATCGGTTATCAAGCGATTCTGGTCTTGGGACGGTTAACCGAGCAGACCCGAAAGCTGACTCGGTTAACGAAGATGGTGTATCTGAATCTATATCTGCAGGAGCTGATTTATGTGAGAGCAAATTTGTACAGTGTAGGATTTGTCATGATGAAGATGAAGATACCAACATGGATACGCCTTGTTCTTGTTCTGGAACATTAAAGTTTGCACATCATAATTGCGTCCAGAGATGGTGCAATGAGAAAGGTGATACGGTATGCGAAATTTGTCGTCAGCAATATAAACCTGGTTACACAGCTCCACGACAATTGTTTCACTACACAGGCATTTCTATGAACTTCGGTAGTGATTGGGGAATCGAGGGACTAGATCTTCGTAATCCTTATTTCCTAACCTGGGGGGATGCGGATGATGATCATGATCTTTACTCATTTCATAGCCCCACAAGCTTGATTTGTTGCCGTCTAATTGCCTTGCTATTCGTCCTTCTGCTCTTCCTGCGCCATTCTCTTCCAGTTTTACTAGGTGGAGTCGATGATTTCTCGATAACTTTGCTCATGTTACCATTAGTGAGAACATTAGGCATCTTGTTGATTGCTTATGTATTTTTCAAGTCATTCATTGTTATACAACGTTGCAGGCAAGAGAGGGATACTAGACTCTCTGGTTTCTCGTCTGACGAAGAAACTGCACCGCCTCGGATATTGATGGCATTGCCGGAAAGACCCGAGCTTCATGTTCCTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

259

Amino Acids

29.05

Weight (kDa)

4.95

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	54 - 99	2.1e-13	RING-variant domain
DUF3675	PF12428	105 - 215	6.6e-31	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	434, 722
AclI	AACGTT	1 cut(s)	661
AcsI	RAATTY	2 cut(s)	149, 291
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	313, 422
AluBI	AGCT	5 cut(s)	83, 131, 326, 477, 760
AluI	AGCT	5 cut(s)	83, 131, 326, 477, 760
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	755
ApoI	RAATTY	2 cut(s)	149, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AspLEI	GCGC	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	755
BccI	CCATC	3 cut(s)	95, 252, 730
BceAI	ACGGC	1 cut(s)	474
BcgI	CGANNNNNNTGC	4 cut(s)	562, 596, 698, 732
BciT130I	CCWGG	2 cut(s)	315, 424
BciVI	GTATCC	2 cut(s)	193, 673
BclI	TGATCA	1 cut(s)	442
BfaI	CTAG	3 cut(s)	395, 551, 684
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	2 cut(s)	193, 673
BglII	AGATCT	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	315, 424
BmeT110I	CYCGRG	1 cut(s)	755
BmrFI	CCNGG	2 cut(s)	315, 424
BmsI	GCATC	2 cut(s)	421, 621
BsaBI	GATNNNNATC	2 cut(s)	441, 447
BsaJI	CCNNGG	2 cut(s)	423, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	2 cut(s)	271, 740
Bse8I	GATNNNNATC	2 cut(s)	441, 447
BseBI	CCWGG	2 cut(s)	315, 424
BseDI	CCNNGG	2 cut(s)	423, 725
BseGI	GGATG	2 cut(s)	436, 442
BseJI	GATNNNNATC	2 cut(s)	441, 447
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	2 cut(s)	271, 740
BseNI	ACTGG	1 cut(s)	542
BsgI	GTGCAG	1 cut(s)	702
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	2 cut(s)	70, 405
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	70, 405
BsoBI	CYCGRG	1 cut(s)	755
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	5 cut(s)	7, 28, 397, 442, 448
BspACI	CCGC	2 cut(s)	434, 722
BspHI	TCATGA	2 cut(s)	172, 445
BspMAI	CTGCAG	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	271, 740
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	423, 725
BssMI	GATC	5 cut(s)	7, 28, 397, 442, 448
Bst2UI	CCWGG	2 cut(s)	315, 424
Bst4CI	ACNGT	3 cut(s)	61, 159, 283
Bst6I	CTCTTC	2 cut(s)	527, 543
BstAUI	TGTACA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	436, 442
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	5 cut(s)	10, 31, 400, 445, 451
BstMBI	GATC	5 cut(s)	7, 28, 397, 442, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 526
BstNI	CCWGG	2 cut(s)	315, 424
BstSCI	CCNGG	2 cut(s)	313, 422
BstSFI	CTRYAG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuI	GTATCC	2 cut(s)	193, 673
BtsCI	GGATG	2 cut(s)	436, 442
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	668
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	2 cut(s)	172, 445
CfoI	GCGC	1 cut(s)	531
CseI	GACGC	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	155
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	5 cut(s)	173, 196, 446, 586, 764
CviJI	RGCY	6 cut(s)	83, 131, 326, 468, 477, 760
CviKI_1	RGCY	6 cut(s)	83, 131, 326, 468, 477, 760
CviQI	GTAC	1 cut(s)	155
DpnI	GATC	5 cut(s)	9, 30, 399, 444, 450
DpnII	GATC	5 cut(s)	7, 28, 397, 442, 448
Eam1104I	CTCTTC	2 cut(s)	527, 543
EarI	CTCTTC	2 cut(s)	527, 543
Eco88I	CYCGRG	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	313, 422
FaeI	CATG	5 cut(s)	176, 199, 449, 589, 767
FaqI	GGGAC	2 cut(s)	70, 405
FatI	CATG	5 cut(s)	172, 195, 445, 585, 763
FbaI	TGATCA	1 cut(s)	442
FokI	GGATG	2 cut(s)	443, 449
FspBI	CTAG	3 cut(s)	395, 551, 684
GlaI	GCGC	1 cut(s)	530
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	176, 199, 449, 589, 767
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	2 cut(s)	64, 94
HindII	GTYRAC	2 cut(s)	64, 94
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	6 cut(s)	44, 86, 113, 384, 558, 687
HpaI	GTTAAC	2 cut(s)	64, 94
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	64, 94
Hpy188I	TCNGA	3 cut(s)	112, 706, 729
Hpy188III	TCNNGA	5 cut(s)	173, 219, 253, 446, 571
Hpy8I	GTNNAC	2 cut(s)	64, 94
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	3 cut(s)	61, 159, 283
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	5 cut(s)	125, 236, 264, 666, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 526
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	5 cut(s)	176, 199, 449, 589, 767
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	442
KspAI	GTTAAC	2 cut(s)	64, 94
Kzo9I	GATC	5 cut(s)	7, 28, 397, 442, 448
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	128, 331
LweI	GCATC	2 cut(s)	421, 621
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	3 cut(s)	395, 551, 684
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	2 cut(s)	317, 588
MalI	GATC	5 cut(s)	9, 30, 399, 444, 450
MboI	GATC	5 cut(s)	7, 28, 397, 442, 448
MboII	GAAGA	7 cut(s)	110, 191, 197, 392, 514, 530, 722
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	6 cut(s)	149, 244, 291, 335, 495, 775
MlyI	GAGTC	3 cut(s)	80, 567, 681
MnlI	CCTC	3 cut(s)	382, 669, 735
MseI	TTAA	4 cut(s)	63, 93, 227, 778
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	315, 424
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	315, 424
MwoI	GCNNNNNNNGC	2 cut(s)	474, 526
NdeII	GATC	5 cut(s)	7, 28, 397, 442, 448
NlaIII	CATG	5 cut(s)	176, 199, 449, 589, 767
PagI	TCATGA	2 cut(s)	172, 445
PciSI	GCTCTTC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	44, 113, 384
PleI	GAGTC	3 cut(s)	80, 566, 681
PpsI	GAGTC	3 cut(s)	80, 566, 681
Psp1406I	AACGTT	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	313, 422
PspGI	CCWGG	2 cut(s)	313, 422
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	63, 93, 227, 778
Sau3AI	GATC	5 cut(s)	7, 28, 397, 442, 448
SchI	GAGTC	3 cut(s)	80, 567, 681
ScrFI	CCNGG	2 cut(s)	315, 424
SexAI	ACCWGGT	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	421, 621
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	149, 244, 291, 335, 495, 775
SsiI	CCGC	2 cut(s)	434, 722
SspMI	CTAG	3 cut(s)	395, 551, 684
StyD4I	CCNGG	2 cut(s)	313, 422
TaaI	ACNGT	3 cut(s)	61, 159, 283
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	387, 561, 572
TasI	AATT	6 cut(s)	149, 244, 291, 335, 495, 775
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	44, 113, 384
Tru1I	TTAA	4 cut(s)	63, 93, 227, 778
Tru9I	TTAA	4 cut(s)	63, 93, 227, 778
TscAI	CASTG	1 cut(s)	164
TspDTI	ATGAA	6 cut(s)	192, 198, 377, 452, 637, 752
TspRI	CASTG	1 cut(s)	164
XapI	RAATTY	2 cut(s)	149, 291
XspI	CTAG	3 cut(s)	395, 551, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.