Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Reverse (-)

16552538 .. 16558182

Gene Structure 5645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G151200.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGGGGGATCATTTTGTGTTGTTTGTTGATCGACTGATCACTGAATCTACCCTAGAAGCTGTTATAGAGAGCACATATCAGTTGCAGCACCCAACACTCACAGCAAGCCAAGATACTATGGACTCTTCCCATAAAATAGATGTGAATGGGTCATCTTCTAGTAAATTTGTACAGTGTAGGATTTGCCATGATGAGGATGATGATTCAAACATGGAAACACCATGTTCTTGCTGTGGCAGCTTGAAGTATGCTCATCGTAAATGTGTTCAGAGGTGGTGCAATGAGAAGGGTGATACAATATGTGAGATTTGCCACCAGCAATTCACGCCAGATTATACAGCACCACCTCCTCTATTTCATTATAGTGGTATTCCGATGAACTTCCGGGGGAATTGGGAGATTTCCAGAAGGGATCTGCAGAATCCTCAATTTATAGCAATGGTTACTGCTGATCATGAATACATGAATACCGACTTTGATGATGAATACTCAGCTCCCTCTTCAAGAAGCTTGATATGCTGCCGTGTAGTTGCTATCATCTTTATGGTTCTTCTGGTTTTACGCCATACTCTTCCATTCTTAATAAGTGGAGCTGGAGAGTACTCATTGACATTGTTCACATTACTGATGTTGAGAACGATTGGGATTCTATTTCCAATCTATATCATGGTTAGAGCATTCACTGCTATCCAACGTCAGCGGCGTCAACAGGATCCTGAAATTTCCCTTGCCACATCCGACGAAGAAAATGACTTGGCATATCCATCACGCTTGATTCAAATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

264

Amino Acids

30.14

Weight (kDa)

5.21

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	4 cut(s)	18, 423, 710, 723
AcsI	RAATTY	3 cut(s)	167, 723, 783
AcyI	GRCGYC	1 cut(s)	706
AfaI	GTAC	2 cut(s)	174, 605
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	210, 247, 507, 782
AluBI	AGCT	5 cut(s)	62, 243, 497, 513, 596
AluI	AGCT	5 cut(s)	62, 243, 497, 513, 596
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	4 cut(s)	18, 423, 710, 723
ApeKI	GCWGC	3 cut(s)	88, 240, 522
ApoI	RAATTY	3 cut(s)	167, 723, 783
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	100, 252, 509
BccI	CCATC	1 cut(s)	775
BceAI	ACGGC	1 cut(s)	510
BclI	TGATCA	2 cut(s)	39, 454
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	2 cut(s)	56, 162
BfmI	CTRYAG	1 cut(s)	419
BisI	GCNGC	4 cut(s)	89, 241, 523, 704
BlsI	GCNGC	4 cut(s)	90, 242, 524, 705
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	706
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	289, 447
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	205, 737
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	2 cut(s)	289, 447
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	100, 252, 509
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
BspACI	CCGC	1 cut(s)	703
BspCNI	CTCAG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	717
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	4 cut(s)	18, 423, 710, 723
BsrDI	GCAATG	2 cut(s)	289, 447
BsrGI	TGTACA	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
BssNI	GRCGYC	1 cut(s)	706
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	3 cut(s)	133, 508, 579
BstACI	GRCGYC	1 cut(s)	706
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	205, 737
BstKTI	GATC	6 cut(s)	13, 34, 42, 418, 457, 718
BstMBI	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 328, 519, 686
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	100, 252, 509
BstX2I	RGATCY	2 cut(s)	415, 715
BstYI	RGATCY	2 cut(s)	415, 715
BtsCI	GGATG	2 cut(s)	205, 737
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	42, 182, 684
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	457
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	2 cut(s)	173, 604
CviAII	CATG	6 cut(s)	191, 214, 225, 458, 466, 670
CviJI	RGCY	6 cut(s)	62, 111, 243, 497, 513, 596
CviKI_1	RGCY	6 cut(s)	62, 111, 243, 497, 513, 596
CviQI	GTAC	2 cut(s)	173, 604
DdeI	CTNAG	1 cut(s)	493
DpnI	GATC	6 cut(s)	12, 33, 41, 417, 456, 717
DpnII	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
Eam1104I	CTCTTC	3 cut(s)	133, 508, 579
EarI	CTCTTC	3 cut(s)	133, 508, 579
FaeI	CATG	6 cut(s)	194, 217, 228, 461, 469, 673
FatI	CATG	6 cut(s)	190, 213, 224, 457, 465, 669
FbaI	TGATCA	2 cut(s)	39, 454
Fnu4HI	GCNGC	4 cut(s)	89, 241, 523, 704
FokI	GGATG	2 cut(s)	212, 724
Fsp4HI	GCNGC	4 cut(s)	89, 241, 523, 704
FspBI	CTAG	2 cut(s)	56, 162
GluI	GCNGC	4 cut(s)	89, 241, 523, 704
GsuI	CTGGAG	1 cut(s)	618
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	695
Hin1I	GRCGYC	1 cut(s)	706
Hin1II	CATG	6 cut(s)	194, 217, 228, 461, 469, 673
HincII	GTYRAC	1 cut(s)	710
HindII	GTYRAC	1 cut(s)	710
HindIII	AAGCTT	1 cut(s)	511
HinfI	GANTC	6 cut(s)	47, 125, 206, 424, 649, 778
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	621, 710
Hpy188I	TCNGA	3 cut(s)	273, 378, 742
Hpy188III	TCNNGA	4 cut(s)	408, 458, 507, 719
Hpy8I	GTNNAC	2 cut(s)	621, 710
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	2 cut(s)	283, 405
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	3 cut(s)	88, 282, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 328, 519, 686
HpyF3I	CTNAG	1 cut(s)	493
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	1 cut(s)	706
Hsp92II	CATG	6 cut(s)	194, 217, 228, 461, 469, 673
Ksp22I	TGATCA	2 cut(s)	39, 454
Kzo9I	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
LmnI	GCTCC	2 cut(s)	502, 593
LpnPI	CCDG	8 cut(s)	332, 345, 401, 421, 542, 582, 698, 732
Lsp1109I	GCAGC	3 cut(s)	100, 252, 509
MaeI	CTAG	2 cut(s)	56, 162
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	6 cut(s)	12, 33, 41, 417, 456, 717
MboI	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
MboII	GAAGA	6 cut(s)	120, 150, 495, 545, 566, 758
MflI	RGATCY	2 cut(s)	415, 715
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	6 cut(s)	167, 323, 394, 431, 723, 783
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	718, 765
MnlI	CCTC	6 cut(s)	190, 267, 360, 363, 438, 511
MseI	TTAA	1 cut(s)	584
MslI	CAYNNNNRTG	2 cut(s)	366, 545
MspA1I	CMGCKG	1 cut(s)	703
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	680
MwoI	GCNNNNNNNGC	4 cut(s)	240, 328, 519, 686
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
NlaIII	CATG	6 cut(s)	194, 217, 228, 461, 469, 673
NlaIV	GGNNCC	1 cut(s)	717
PagI	TCATGA	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	47, 206, 424, 649, 778
PkrI	GCNGC	4 cut(s)	90, 242, 524, 705
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	2 cut(s)	415, 715
RsaI	GTAC	2 cut(s)	174, 605
RsaNI	GTAC	2 cut(s)	173, 604
RseI	CAYNNNNRTG	2 cut(s)	366, 545
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	4 cut(s)	89, 241, 523, 704
Sau3AI	GATC	6 cut(s)	10, 31, 39, 415, 454, 715
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	8 cut(s)	64, 245, 278, 352, 499, 515, 598, 700
SfcI	CTRYAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	366, 545
Sse9I	AATT	6 cut(s)	167, 323, 394, 431, 723, 783
SsiI	CCGC	1 cut(s)	703
SspMI	CTAG	2 cut(s)	56, 162
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	2 cut(s)	34, 787
TasI	AATT	6 cut(s)	167, 323, 394, 431, 723, 783
TatI	WGTACW	2 cut(s)	172, 603
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	5 cut(s)	47, 206, 424, 649, 778
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TscAI	CASTG	3 cut(s)	49, 182, 691
TseI	GCWGC	3 cut(s)	88, 240, 522
TspDTI	ATGAA	5 cut(s)	350, 395, 474, 482, 501
TspRI	CASTG	3 cut(s)	49, 182, 691
XapI	RAATTY	3 cut(s)	167, 723, 783
XspI	CTAG	2 cut(s)	56, 162
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.