Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Forward (+)

38779015 .. 38781715

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGGATCATTTTGTGTTGTTGGTGGATCGATTGATCACTGAAGCTTCCCTTGAAGATGCTATAAAGAGCAAATATCTGTTGCAGCACCCAACACAGACAGCTAGCCACAATAATATGGATTCTTCCCATAAAATAGACGTGAATACCCAGTCATCTGCTAGAAAATTTGTAGAATGTAGGATTTGCCACGATGAGGATGATGACTCAAACATGGAAGCACCATGTTCTTGCTGTGGTAGCTTGAAGTACGCTCACCGTAAGTGTGTTCAGAGGTGGTGCAACGAGAAGGGTGATACAATATGTGAGATTTGCCGCCAGCAATTCAAGCCAGATTATACGGCACCACCTCCTCTATTTCATTACGGTGGTATTCCAATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGACTTGCAGAATCCTGGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAATGACCTTGATGATGAATATTCAGCTCCCTCTTCGAGAAGCTTGCTATGCTGCCGTATAGTTGCTATAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACATTAATGATGTTGAGAACAATTGGGATTCTTTTTCCAATTTATATCTTGGTTAGAGCATTCACTGCTATCCAACGTCGACGACAACAACAGGATTCTCGAATTTCTCTTGGTGCATCAGATGAAGAAAATGACTTGGCATATCCATCACGTTTTATTCAAATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

263

Amino Acids

30.1

Weight (kDa)

5.9

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	60 - 105	5.6e-13	RING-variant domain
DUF3675	PF12428	111 - 227	3.5e-43	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	700
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	15, 36
AcsI	RAATTY	3 cut(s)	167, 723, 783
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	3 cut(s)	251, 464, 605
AfiI	CCNNNNNNNGG	2 cut(s)	196, 442
AgsI	TTSAA	5 cut(s)	56, 247, 328, 782, 788
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	6 cut(s)	47, 104, 243, 497, 513, 596
AluI	AGCT	6 cut(s)	47, 104, 243, 497, 513, 596
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	15, 36
ApeKI	GCWGC	2 cut(s)	85, 522
ApoI	RAATTY	3 cut(s)	167, 723, 783
AseI	ATTAAT	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	248, 305
AsuNHI	GCTAGC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	97, 509
BccI	CCATC	1 cut(s)	775
BceAI	ACGGC	2 cut(s)	357, 510
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	4 cut(s)	105, 162, 408, 437
BisI	GCNGC	3 cut(s)	86, 316, 523
BlsI	GCNGC	3 cut(s)	87, 317, 524
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	2 cut(s)	389, 429
BmgBI	CACGTC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	389, 429
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	49, 746
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 442
Bse1I	ACTGG	2 cut(s)	151, 578
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	196, 442
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	151, 578
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	97, 509
BshNI	GGYRCC	1 cut(s)	343
BshVI	ATCGAT	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	196, 442
BsmAI	GTCTC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	680
Bsp143I	GATC	4 cut(s)	7, 28, 36, 454
BspACI	CCGC	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	345
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	15, 36
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	151, 578
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	7, 28, 36, 454
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	260, 368, 618
Bst6I	CTCTTC	2 cut(s)	406, 508
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	106, 320, 515
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	4 cut(s)	10, 31, 39, 457
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	7, 28, 36, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 328, 519, 686
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	387, 427
BstV1I	GCAGC	2 cut(s)	97, 509
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	39, 614, 684
Cac8I	GCNNGC	3 cut(s)	106, 320, 515
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	250, 463, 604
CviAII	CATG	3 cut(s)	214, 225, 466
CviJI	RGCY	8 cut(s)	47, 104, 108, 243, 331, 497, 513, 596
CviKI_1	RGCY	8 cut(s)	47, 104, 108, 243, 331, 497, 513, 596
CviQI	GTAC	3 cut(s)	250, 463, 604
DpnI	GATC	4 cut(s)	9, 30, 38, 456
DpnII	GATC	4 cut(s)	7, 28, 36, 454
Eam1104I	CTCTTC	2 cut(s)	406, 508
EarI	CTCTTC	2 cut(s)	406, 508
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	217, 228, 469
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	3 cut(s)	213, 224, 465
FauNDI	CATATG	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	86, 316, 523
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	86, 316, 523
FspBI	CTAG	4 cut(s)	105, 162, 408, 437
GluI	GCNGC	3 cut(s)	86, 316, 523
GsuI	CTGGAG	1 cut(s)	618
HapII	CCGG	1 cut(s)	388
Hin1II	CATG	3 cut(s)	217, 228, 469
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HindIII	AAGCTT	2 cut(s)	45, 511
HinfI	GANTC	6 cut(s)	122, 206, 424, 432, 649, 716
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	2 cut(s)	248, 305
Hpy166II	GTNNAC	2 cut(s)	621, 701
Hpy188I	TCNGA	2 cut(s)	273, 742
Hpy188III	TCNNGA	4 cut(s)	408, 458, 507, 720
Hpy8I	GTNNAC	2 cut(s)	621, 701
Hpy99I	CGWCG	2 cut(s)	702, 705
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	3 cut(s)	260, 368, 618
HpyCH4IV	ACGT	3 cut(s)	141, 697, 772
HpyCH4V	TGCA	4 cut(s)	85, 282, 421, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 328, 519, 686
HpySE526I	ACGT	3 cut(s)	141, 697, 772
Hsp92II	CATG	3 cut(s)	217, 228, 469
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	7, 28, 36, 454
LmnI	GCTCC	2 cut(s)	502, 593
Lsp1109I	GCAGC	2 cut(s)	97, 509
LweI	GCATC	2 cut(s)	49, 746
MaeI	CTAG	4 cut(s)	105, 162, 408, 437
MaeII	ACGT	3 cut(s)	141, 697, 772
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	4 cut(s)	9, 30, 38, 456
MboI	GATC	4 cut(s)	7, 28, 36, 454
MboII	GAAGA	6 cut(s)	68, 117, 423, 495, 545, 758
MfeI	CAATTG	1 cut(s)	642
MluCI	AATT	8 cut(s)	167, 323, 394, 585, 642, 660, 723, 783
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	5 cut(s)	190, 267, 360, 363, 511
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	2 cut(s)	366, 626
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	389, 429
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	240, 328, 519, 686
NciI	CCSGG	1 cut(s)	389
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	4 cut(s)	7, 28, 36, 454
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	217, 228, 469
NlaIV	GGNNCC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	122, 424, 432, 649, 716
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	87, 317, 524
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	345
RsaI	GTAC	3 cut(s)	251, 464, 605
RsaNI	GTAC	3 cut(s)	250, 463, 604
RseI	CAYNNNNRTG	2 cut(s)	366, 626
SalI	GTCGAC	1 cut(s)	699
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	3 cut(s)	86, 316, 523
Sau3AI	GATC	4 cut(s)	7, 28, 36, 454
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	389, 429
SfaNI	GCATC	2 cut(s)	49, 746
SgrDI	CGTCGACG	1 cut(s)	699
SmiMI	CAYNNNNRTG	2 cut(s)	366, 626
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	8 cut(s)	167, 323, 394, 585, 642, 660, 723, 783
SsiI	CCGC	1 cut(s)	316
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	4 cut(s)	105, 162, 408, 437
StyD4I	CCNGG	2 cut(s)	387, 427
TaaI	ACNGT	3 cut(s)	260, 368, 618
TaiI	ACGT	3 cut(s)	144, 700, 775
TaqI	TCGA	4 cut(s)	31, 506, 700, 721
TasI	AATT	8 cut(s)	167, 323, 394, 585, 642, 660, 723, 783
TatI	WGTACW	2 cut(s)	462, 603
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	5 cut(s)	122, 424, 432, 649, 716
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	3 cut(s)	46, 621, 691
TseI	GCWGC	2 cut(s)	85, 522
TspDTI	ATGAA	5 cut(s)	350, 395, 482, 501, 759
TspRI	CASTG	3 cut(s)	46, 621, 691
VspI	ATTAAT	1 cut(s)	626
XapI	RAATTY	3 cut(s)	167, 723, 783
XbaI	TCTAGA	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	700
XspI	CTAG	4 cut(s)	105, 162, 408, 437
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.