Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Reverse (-)

10020405 .. 10024494

Gene Structure 4090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTGTGTTTTGCGCGATCGACTACACTCAATCTCTTGCTTCGTTTCAAGAAACACAAGCTACAAAGCGAAAGATTGCAGCTTTCTTCAATTGCAGAGAATCCCATTTCCATTGCCGGTTCAATTCTGTACGGGTGCTTGCGTTGTTTGGACTGTGTTAGAGTCTCAATTGCAGATAGGATGGGGGATCATTTTGTGTTGTTGGTGGATCGATTGATCACTGAAGCTTCCCTTGAAGATGCTATAGAGAGCAAATATCTGTTGCAGCACCCAACACAGACAGCTAGCCACAATAATATGGATTCTTCCCATAAAATAGACATGAATACCCAGTCATCTGCTAGAAAATTTGTAGAATGTAGGATTTGCCACGATGAGGATGATGACTCAAACATGGAAGCACCATGTTCTTGCTGTGGTAGCTTGAAGTACGCTCACCGTAAGTGTGTTCAGAGGTGGTGCAACGAGAAGGGTGATACAGTATGTGAGATTTGCCGCCAGCAATTCAAGCCAGATTATACGGCACCACCTCCTCTATTTCATTACGGTGGTATTCCAATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGAATTGCAGAATCCTCGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAACGACCTTGATGATGAATATTCAGCTCCCTCTTCGAGAAGCTTGCTATGCTGCCGTCTAGTTGCTGTAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACATTAATGATGTTGAGAACAATTGGGATTCTTTTTCCAATTTACATCTTGGTTAGAGCATTTACTGCTATCCAACGTCGACGACAACAACAGGATTCTCGAATTTCTCTTGGCGCATCAGATGAAGAAAATGACTTGGCATATCCGTCACGTTTTATTCAAATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

324

Amino Acids

36.97

Weight (kDa)

6.74

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	120 - 165	1e-12	RING-variant domain
DUF3675	PF12428	171 - 287	1.1e-42	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	880
AccII	CGCG	1 cut(s)	16
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	195, 216
AcsI	RAATTY	3 cut(s)	347, 903, 963
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	4 cut(s)	131, 431, 644, 785
AfiI	CCNNNNNNNGG	2 cut(s)	376, 622
AgsI	TTSAA	8 cut(s)	49, 90, 123, 236, 427, 508, 962, 968
AluBI	AGCT	8 cut(s)	61, 82, 227, 284, 423, 677, 693, 776
AluI	AGCT	8 cut(s)	61, 82, 227, 284, 423, 677, 693, 776
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	195, 216
ApeKI	GCWGC	3 cut(s)	79, 265, 702
ApoI	RAATTY	3 cut(s)	347, 903, 963
AseI	ATTAAT	1 cut(s)	806
AspLEI	GCGC	2 cut(s)	16, 917
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	428, 485
AsuNHI	GCTAGC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	91, 277, 689
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	2 cut(s)	537, 690
BcgI	CGANNNNNNTGC	4 cut(s)	590, 624, 676, 710
BclI	TGATCA	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	5 cut(s)	285, 342, 588, 617, 710
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	4 cut(s)	80, 266, 496, 703
BlsI	GCNGC	4 cut(s)	81, 267, 497, 704
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	229, 926
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 622
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	331, 758
Bse3DI	GCAATG	2 cut(s)	111, 627
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	186, 385
BseLI	CCNNNNNNNGG	2 cut(s)	376, 622
BseMI	GCAATG	2 cut(s)	111, 627
BseNI	ACTGG	2 cut(s)	331, 758
BseRI	GAGGAG	1 cut(s)	522
BseXI	GCAGC	3 cut(s)	91, 277, 689
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	523
BshVI	ATCGAT	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	117, 568
BslI	CCNNNNNNNGG	2 cut(s)	376, 622
BsmAI	GTCTC	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	17, 187, 208, 216, 634
BspACI	CCGC	1 cut(s)	496
BspDI	ATCGAT	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	525
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	195, 216
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	2 cut(s)	111, 627
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	331, 758
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	5 cut(s)	17, 187, 208, 216, 634
Bst4CI	ACNGT	5 cut(s)	155, 440, 481, 548, 798
Bst6I	CTCTTC	2 cut(s)	586, 688
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	4 cut(s)	140, 286, 500, 695
BstF5I	GGATG	2 cut(s)	186, 385
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	16, 917
BstKTI	GATC	5 cut(s)	20, 190, 211, 219, 637
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	17, 187, 208, 216, 634
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 508, 699, 866
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	91, 277, 689
Bsu15I	ATCGAT	1 cut(s)	211
BsuTUI	ATCGAT	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	186, 385
BtsIMutI	CAGTG	2 cut(s)	219, 794
Cac8I	GCNNGC	4 cut(s)	140, 286, 500, 695
CfoI	GCGC	2 cut(s)	16, 917
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	211
Csp6I	GTAC	4 cut(s)	130, 430, 643, 784
CviAII	CATG	4 cut(s)	322, 394, 405, 646
CviQI	GTAC	4 cut(s)	130, 430, 643, 784
DpnI	GATC	5 cut(s)	19, 189, 210, 218, 636
DpnII	GATC	5 cut(s)	17, 187, 208, 216, 634
Eam1104I	CTCTTC	2 cut(s)	586, 688
EarI	CTCTTC	2 cut(s)	586, 688
Eco57I	CTGAAG	1 cut(s)	243
FaeI	CATG	4 cut(s)	325, 397, 408, 649
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	4 cut(s)	321, 393, 404, 645
FauNDI	CATATG	1 cut(s)	750
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	880
Fnu4HI	GCNGC	4 cut(s)	80, 266, 496, 703
FokI	GGATG	2 cut(s)	193, 392
Fsp4HI	GCNGC	4 cut(s)	80, 266, 496, 703
FspBI	CTAG	5 cut(s)	285, 342, 588, 617, 710
GlaI	GCGC	2 cut(s)	15, 916
GluI	GCNGC	4 cut(s)	80, 266, 496, 703
GsuI	CTGGAG	1 cut(s)	798
HapII	CCGG	2 cut(s)	117, 568
HhaI	GCGC	2 cut(s)	16, 917
Hin1II	CATG	4 cut(s)	325, 397, 408, 649
Hin6I	GCGC	2 cut(s)	14, 915
HinP1I	GCGC	2 cut(s)	14, 915
HincII	GTYRAC	1 cut(s)	881
HindII	GTYRAC	1 cut(s)	881
HindIII	AAGCTT	2 cut(s)	225, 691
HinfI	GANTC	8 cut(s)	100, 162, 302, 386, 604, 612, 829, 896
HpaII	CCGG	2 cut(s)	117, 568
HphI	GGTGA	2 cut(s)	428, 485
Hpy166II	GTNNAC	2 cut(s)	801, 881
Hpy188I	TCNGA	2 cut(s)	453, 922
Hpy188III	TCNNGA	5 cut(s)	49, 588, 638, 687, 900
Hpy8I	GTNNAC	2 cut(s)	801, 881
Hpy99I	CGWCG	2 cut(s)	882, 885
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	5 cut(s)	155, 440, 481, 548, 798
HpyCH4IV	ACGT	2 cut(s)	877, 952
HpyCH4V	TGCA	6 cut(s)	79, 95, 173, 265, 462, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 508, 699, 866
HpySE526I	ACGT	2 cut(s)	877, 952
Hsp92II	CATG	4 cut(s)	325, 397, 408, 649
HspAI	GCGC	2 cut(s)	14, 915
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	5 cut(s)	17, 187, 208, 216, 634
LmnI	GCTCC	2 cut(s)	682, 773
LpnPI	CCDG	9 cut(s)	130, 344, 512, 525, 581, 722, 762, 771, 878
Lsp1109I	GCAGC	3 cut(s)	91, 277, 689
LweI	GCATC	2 cut(s)	229, 926
MaeI	CTAG	5 cut(s)	285, 342, 588, 617, 710
MaeII	ACGT	2 cut(s)	877, 952
MaeIII	GTNAC	3 cut(s)	625, 718, 948
MalI	GATC	5 cut(s)	19, 189, 210, 218, 636
MboI	GATC	5 cut(s)	17, 187, 208, 216, 634
MboII	GAAGA	7 cut(s)	78, 248, 297, 603, 675, 725, 938
MfeI	CAATTG	3 cut(s)	90, 168, 822
MlyI	GAGTC	2 cut(s)	171, 380
MmeI	TCCRAC	1 cut(s)	898
MnlI	CCTC	6 cut(s)	370, 447, 540, 543, 618, 691
MseI	TTAA	1 cut(s)	806
MslI	CAYNNNNRTG	2 cut(s)	546, 806
MspI	CCGG	2 cut(s)	117, 568
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	3 cut(s)	90, 168, 822
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	420, 508, 699, 866
NciI	CCSGG	1 cut(s)	569
NdeI	CATATG	1 cut(s)	750
NdeII	GATC	5 cut(s)	17, 187, 208, 216, 634
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	325, 397, 408, 649
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	948
PfeI	GAWTC	6 cut(s)	100, 302, 604, 612, 829, 896
PkrI	GCNGC	4 cut(s)	81, 267, 497, 704
Ple19I	CGATCG	1 cut(s)	20
PleI	GAGTC	2 cut(s)	170, 380
PpsI	GAGTC	2 cut(s)	170, 380
PshBI	ATTAAT	1 cut(s)	806
PspN4I	GGNNCC	1 cut(s)	525
PvuI	CGATCG	1 cut(s)	20
RsaI	GTAC	4 cut(s)	131, 431, 644, 785
RsaNI	GTAC	4 cut(s)	130, 430, 643, 784
RseI	CAYNNNNRTG	2 cut(s)	546, 806
SalI	GTCGAC	1 cut(s)	879
SaqAI	TTAA	1 cut(s)	806
SatI	GCNGC	4 cut(s)	80, 266, 496, 703
Sau3AI	GATC	5 cut(s)	17, 187, 208, 216, 634
ScaI	AGTACT	1 cut(s)	785
SchI	GAGTC	2 cut(s)	171, 380
ScrFI	CCNGG	1 cut(s)	569
SfaNI	GCATC	2 cut(s)	229, 926
SfcI	CTRYAG	1 cut(s)	243
SgrDI	CGTCGACG	1 cut(s)	879
SmiMI	CAYNNNNRTG	2 cut(s)	546, 806
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SsiI	CCGC	1 cut(s)	496
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	5 cut(s)	285, 342, 588, 617, 710
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	5 cut(s)	155, 440, 481, 548, 798
TaiI	ACGT	2 cut(s)	880, 955
TaqI	TCGA	6 cut(s)	20, 211, 610, 686, 880, 901
TatI	WGTACW	2 cut(s)	642, 783
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	6 cut(s)	100, 302, 604, 612, 829, 896
Tru1I	TTAA	1 cut(s)	806
Tru9I	TTAA	1 cut(s)	806
TscAI	CASTG	2 cut(s)	226, 801
TseFI	GTSAC	1 cut(s)	948
TseI	GCWGC	3 cut(s)	79, 265, 702
Tsp45I	GTSAC	1 cut(s)	948
TspDTI	ATGAA	6 cut(s)	338, 530, 575, 662, 681, 939
TspGWI	ACGGA	1 cut(s)	936
TspRI	CASTG	2 cut(s)	226, 801
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	3 cut(s)	347, 903, 963
XbaI	TCTAGA	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	880
XspI	CTAG	5 cut(s)	285, 342, 588, 617, 710
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.