Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Reverse (-)

17953291 .. 17955961

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAATCTTCCCATCAAATAGATATGAATACCCTGTCATCTCCTAGTAAATTTGTACAGTGTAGGATTTGCCACGATGAGGACGATGATTCAAACATGGAAGCACCATGTTCTTGCTGTGGCAGCTTGAAGTACGCTCACCGCAAATGTGTTCAGAAGTGGTGCAACGAGAAGGGTGATACAATTTGTGAAATTTGCCACCAGCAATTCAAGCCAGATTATACAGCACCGCCTCCTCTATATCATTATAGTGGTATCCCAATGAACTTCCGGGGGAACTGGGAGATTTCCAGAAGGGACCTGCAGAATCCTGGATTTATAGCAATGGTTACTACTGATAACGGATACCTGAATACGGACTTTGCTGATGAATACTCAGCTCCTTCTTCAAGAAGCTTGATATGCTGTCGTATAGTTGCTATCATCTTCATGGTTCTTCTGGTTTTACGCCATACTCTTCCAATCTTAATAAGTGGAGCAGGAGAGTACTCATTGACGTTATTCACATTAATGGTGTTGAGAACGATTGGAATTCTTTTTCCAATCTATATCATGGTTAAAGTATTCACTGTTATCCAACGTCGGCGGCATCAACAGGATCCTCAGATTTCCCTTGCCACTTCAGACGAAGAGAATGACTTTGCATATCCATCACGTTTTATTCAAATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

225

Amino Acids

25.69

Weight (kDa)

6.15

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AciI	CCGC	3 cut(s)	142, 230, 586
AclWI	GGATC	2 cut(s)	593, 606
AcsI	RAATTY	4 cut(s)	50, 192, 531, 666
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	57, 134, 488
AfiI	CCNNNNNNNGG	2 cut(s)	79, 355
AgsI	TTSAA	5 cut(s)	93, 130, 211, 390, 665
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	126, 380, 396
AluI	AGCT	3 cut(s)	126, 380, 396
AlwI	GGATC	2 cut(s)	593, 606
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	4 cut(s)	50, 192, 531, 666
AseI	ATTAAT	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	131, 188
AvaII	GGWCC	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	21, 658
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	2 cut(s)	266, 338
BcnI	CCSGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	309
BfuI	GTATCC	2 cut(s)	266, 338
BisI	GCNGC	2 cut(s)	124, 587
BlsI	GCNGC	2 cut(s)	125, 588
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	272, 312
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	299, 600
BmrFI	CCNGG	2 cut(s)	272, 312
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 355
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	79, 355
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	390, 617
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	79, 355
BsmFI	GGGAC	1 cut(s)	311
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	3 cut(s)	142, 230, 586
BspCNI	CTCAG	2 cut(s)	389, 616
BspLI	GGNNCC	2 cut(s)	299, 600
BspMAI	CTGCAG	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	593, 606
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	60, 571
Bst6I	CTCTTC	2 cut(s)	462, 624
BstAUI	TGTACA	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	376, 603
BstKTI	GATC	1 cut(s)	601
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 211, 402
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	270, 310
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	2 cut(s)	266, 338
BtsIMutI	CAGTG	2 cut(s)	65, 567
BveI	ACCTGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	56, 133, 487
CviAII	CATG	4 cut(s)	97, 108, 430, 553
CviJI	RGCY	4 cut(s)	126, 214, 380, 396
CviKI_1	RGCY	4 cut(s)	126, 214, 380, 396
CviQI	GTAC	3 cut(s)	56, 133, 487
DdeI	CTNAG	2 cut(s)	376, 603
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eam1104I	CTCTTC	2 cut(s)	462, 624
EarI	CTCTTC	2 cut(s)	462, 624
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	310
FaeI	CATG	4 cut(s)	100, 111, 433, 556
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	4 cut(s)	96, 107, 429, 552
Fnu4HI	GCNGC	2 cut(s)	124, 587
Fsp4HI	GCNGC	2 cut(s)	124, 587
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	124, 587
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	4 cut(s)	100, 111, 433, 556
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	3 cut(s)	5, 89, 307
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	2 cut(s)	131, 188
Hpy188I	TCNGA	3 cut(s)	156, 606, 625
Hpy188III	TCNNGA	2 cut(s)	291, 390
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	3 cut(s)	166, 288, 393
HpyCH4III	ACNGT	2 cut(s)	60, 571
HpyCH4IV	ACGT	3 cut(s)	497, 580, 655
HpyCH4V	TGCA	3 cut(s)	165, 304, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 211, 402
HpyF3I	CTNAG	2 cut(s)	376, 603
HpySE526I	ACGT	3 cut(s)	497, 580, 655
Hsp92II	CATG	4 cut(s)	100, 111, 433, 556
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	2 cut(s)	385, 476
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	3 cut(s)	497, 580, 655
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	5 cut(s)	378, 418, 428, 449, 641
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	6 cut(s)	50, 183, 192, 206, 531, 666
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	4 cut(s)	73, 243, 246, 612
MseI	TTAA	3 cut(s)	467, 509, 558
MslI	CAYNNNNRTG	3 cut(s)	249, 428, 509
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	272, 312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	123, 211, 402
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	4 cut(s)	100, 111, 433, 556
NlaIV	GGNNCC	2 cut(s)	299, 600
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	5, 89, 307
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	125, 588
PpuMI	RGGWCCY	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	299, 600
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	3 cut(s)	57, 134, 488
RsaNI	GTAC	3 cut(s)	56, 133, 487
RseI	CAYNNNNRTG	3 cut(s)	249, 428, 509
SaqAI	TTAA	3 cut(s)	467, 509, 558
SatI	GCNGC	2 cut(s)	124, 587
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	272, 312
SetI	ASST	8 cut(s)	128, 303, 351, 382, 398, 500, 583, 658
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	3 cut(s)	249, 428, 509
Sse9I	AATT	6 cut(s)	50, 183, 192, 206, 531, 666
SsiI	CCGC	3 cut(s)	142, 230, 586
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	270, 310
TaaI	ACNGT	2 cut(s)	60, 571
TaiI	ACGT	3 cut(s)	500, 583, 658
TaqI	TCGA	1 cut(s)	670
TasI	AATT	6 cut(s)	50, 183, 192, 206, 531, 666
TatI	WGTACW	2 cut(s)	55, 486
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	3 cut(s)	5, 89, 307
Tru1I	TTAA	3 cut(s)	467, 509, 558
Tru9I	TTAA	3 cut(s)	467, 509, 558
TscAI	CASTG	2 cut(s)	65, 574
TseI	GCWGC	1 cut(s)	123
TspDTI	ATGAA	4 cut(s)	41, 278, 384, 418
TspGWI	ACGGA	2 cut(s)	357, 371
TspRI	CASTG	2 cut(s)	65, 574
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	509
XapI	RAATTY	4 cut(s)	50, 192, 531, 666
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.