Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Forward (+)

25490947 .. 25492526

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0263100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATGAAGAATTCAATGACATGAAGGAGAAAGATGATATACTGTTAGAGAAGCTAAATGTTATCAACAAGAAACTAGAAGAGAAGCTAGCAGAGTTGGATCATACTTTTGGAAAGAAGGGAAAGGTTCTAGAGGAAGAGATCAGAGATCTAGCAGAGGAAAGAAATGGTTTGATGGAGAAGAAGAGAAGACCTCTTTATAGGAAAGGATTCGATGTTAGATTAATTGATGTGAACCGGACTTGTAAAGTTACAAAGGGAGGGCAAGTGGTCAAATACACTGCTATATTAGTTTGTGGGAACTATCATGGTGTTGTTGGTTATGCTAAAGCAAAAGGTCCAGCCGTCCCTATTGCCCTCCAGAAGGTGACGGGTATGAAAGCGGGAAGAACTGTCGAAACCATTCTAAACTTGGCTGGTTTCAATAATGTCAAGTCTAAGGTTGTTGGTTCAAGGAGTCCTCATAATATAGTGAAGGCTGTTTTCAAAGCCCTTAATGTGATTGAAACTTCCAAGGATGTTCAAGAAAATTTTGGGCGCACTGTTGTTGAGAAGTACCTTCTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

9.44

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	71 - 123	6.3e-14	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	124 - 176	4.9e-15	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	11, 529
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	6 cut(s)	16, 424, 453, 487, 506, 524
AluBI	AGCT	2 cut(s)	55, 88
AluI	AGCT	2 cut(s)	55, 88
AlwI	GGATC	1 cut(s)	108
ApoI	RAATTY	2 cut(s)	11, 529
AseI	ATTAAT	1 cut(s)	224
Asp700I	GAANNNNTTC	2 cut(s)	209, 402
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	379
AsuNHI	GCTAGC	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	196
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	329
BfaI	CTAG	4 cut(s)	77, 89, 131, 152
BglII	AGATCT	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmtI	GCTAGC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	10, 523
BseLI	CCNNNNNNNGG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	100, 141, 148
BspACI	CCGC	1 cut(s)	383
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	100, 141, 148
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	45, 394, 544
Bst6I	CTCTTC	3 cut(s)	75, 132, 179
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	10, 523
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	3 cut(s)	103, 144, 151
BstMBI	GATC	3 cut(s)	100, 141, 148
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	10, 523
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 540
Cac8I	GCNNGC	1 cut(s)	90
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	2 cut(s)	22, 308
CviJI	RGCY	6 cut(s)	55, 88, 344, 416, 479, 491
CviKI_1	RGCY	6 cut(s)	55, 88, 344, 416, 479, 491
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	3 cut(s)	102, 143, 150
DpnII	GATC	3 cut(s)	100, 141, 148
Eam1104I	CTCTTC	3 cut(s)	75, 132, 179
EarI	CTCTTC	3 cut(s)	75, 132, 179
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	2 cut(s)	25, 311
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	21, 307
FauI	CCCGC	1 cut(s)	376
FokI	GGATG	2 cut(s)	17, 530
FspBI	CTAG	4 cut(s)	77, 89, 131, 152
GlaI	GCGC	1 cut(s)	539
GsuI	CTGGAG	1 cut(s)	344
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	25, 311
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	210, 457
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	3 cut(s)	131, 361, 524
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	5 cut(s)	19, 112, 358, 469, 569
HpyCH4III	ACNGT	3 cut(s)	45, 394, 544
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	2 cut(s)	25, 311
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	100, 141, 148
LpnPI	CCDG	4 cut(s)	251, 354, 374, 402
MaeI	CTAG	4 cut(s)	77, 89, 131, 152
MaeIII	GTNAC	2 cut(s)	250, 367
MalI	GATC	3 cut(s)	102, 143, 150
MboI	GATC	3 cut(s)	100, 141, 148
MboII	GAAGA	7 cut(s)	20, 92, 149, 193, 196, 201, 399
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	3 cut(s)	11, 225, 529
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	127, 151, 204, 254, 368, 471
MroXI	GAANNNNTTC	2 cut(s)	209, 402
MseI	TTAA	2 cut(s)	224, 495
MspI	CCGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	100, 141, 148
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	25, 311
NmuCI	GTSAC	1 cut(s)	367
PdmI	GAANNNNTTC	2 cut(s)	209, 402
PfeI	GAWTC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PshBI	ATTAAT	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	224, 495
Sau3AI	GATC	3 cut(s)	100, 141, 148
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	466
SetI	ASST	8 cut(s)	57, 90, 129, 196, 340, 369, 444, 561
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	3 cut(s)	11, 225, 529
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	4 cut(s)	77, 89, 131, 152
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	45, 394, 544
TaqI	TCGA	2 cut(s)	213, 396
TasI	AATT	3 cut(s)	11, 225, 529
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	224, 495
Tru9I	TTAA	2 cut(s)	224, 495
TscAI	CASTG	2 cut(s)	286, 547
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	21, 38, 392
TspRI	CASTG	2 cut(s)	286, 547
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	11, 529
XbaI	TCTAGA	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmnI	GAANNNNTTC	2 cut(s)	209, 402
XspI	CTAG	4 cut(s)	77, 89, 131, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.