Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Forward (+)

39276794 .. 39281458

Gene Structure 4665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGACTTGCAGAATCCTGGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAACGACCTTGATGTTGAATATTCAGCTCCCTCTTCGAGAAGCTTGCTATGCTGCCGTATAGTTGCTATAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACATTAATGATGTTGAGAACAATTGGGATTCTTTTTCCAATTTATATCTTGGTTAGAGCATTCACTGCTATCCAACGTCGACGACAACAACAGGATTCTCGAATTTCTCTTGGTGCATCAGATGAAGAAAATGACTTGGCATATCCGTCACGTTTTATTCAAATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

137

Amino Acids

15.77

Weight (kDa)

6.56

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3675	PF12428	1 - 101	1.5e-35	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	345, 405
AfaI	GTAC	2 cut(s)	86, 227
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	110, 404, 410
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	119, 135, 218
AluI	AGCT	3 cut(s)	119, 135, 218
Alw26I	GTCTC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	345, 405
AseI	ATTAAT	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	30, 59
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	11, 51
BmrFI	CCNGG	2 cut(s)	11, 51
BmsI	GCATC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	28, 130
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 308
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	9, 49
BstV1I	GCAGC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	236, 306
Cac8I	GCNNGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	85, 226
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	119, 135, 218
CviKI_1	RGCY	3 cut(s)	119, 135, 218
CviQI	GTAC	2 cut(s)	85, 226
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	28, 130
EarI	CTCTTC	2 cut(s)	28, 130
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	91
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	30, 59
GluI	GCNGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	323
HindII	GTYRAC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	4 cut(s)	46, 54, 271, 338
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	243, 323
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	4 cut(s)	30, 80, 129, 342
Hpy8I	GTNNAC	2 cut(s)	243, 323
Hpy99I	CGWCG	2 cut(s)	324, 327
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	2 cut(s)	319, 394
HpyCH4V	TGCA	2 cut(s)	43, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 308
HpySE526I	ACGT	2 cut(s)	319, 394
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	124, 215
LpnPI	CCDG	7 cut(s)	23, 36, 63, 164, 204, 213, 320
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	2 cut(s)	30, 59
MaeII	ACGT	2 cut(s)	319, 394
MaeIII	GTNAC	2 cut(s)	67, 390
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	4 cut(s)	45, 117, 167, 380
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	6 cut(s)	16, 207, 264, 282, 345, 405
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	11, 51
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	141, 308
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	46, 54, 271, 338
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	86, 227
RsaNI	GTAC	2 cut(s)	85, 226
RseI	CAYNNNNRTG	1 cut(s)	248
SalI	GTCGAC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	11, 51
SetI	ASST	6 cut(s)	102, 121, 137, 220, 322, 397
SfaNI	GCATC	1 cut(s)	368
SgrDI	CGTCGACG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	6 cut(s)	16, 207, 264, 282, 345, 405
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	30, 59
StyD4I	CCNGG	2 cut(s)	9, 49
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	2 cut(s)	322, 397
TaqI	TCGA	3 cut(s)	128, 322, 343
TasI	AATT	6 cut(s)	16, 207, 264, 282, 345, 405
TatI	WGTACW	2 cut(s)	84, 225
TfiI	GAWTC	4 cut(s)	46, 54, 271, 338
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	243, 313
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	3 cut(s)	17, 104, 381
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	243, 313
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	2 cut(s)	345, 405
XbaI	TCTAGA	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	30, 59
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.