Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Reverse (-)

50013129 .. 50016624

Gene Structure 3496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTCTATTTCCATGGCTACTGTCTCTCCCTCATTAACCACCTCCGTCCCCTCACCGGCGCCATCGCCTCTGCGGGCAAGCTCTCTCCGGCCGCAAGCTGGTGCTTCTCGTCCAACAGAAGGCGGAGTGGCGGGAGAGGAAACGCGCCCGACGCAGTAAGCGACGAGAATCAGGATCCGACGGTGAAACCGAGTCGAGGTCCGAGAAGAAGAGAATCAGAAAAAAGAGAGGAAAATGGAGAGAAAAGAAGACGACCCAGTGAGCGAGGTTCTCAGAGATCGATTCAGCTCTCCACCATCTCTATCGCTGATGCCGAAGTTCTCCAAGCAGCGAAGAGAAGGGGCATGGAGATATCAGAACCCGTGGTGGCTTGCATTTCCGACTTGACCTTCAAATTAATTTACTGGATACAGAGATATGGTTTTGATTTTGCCATGACTCTGCAGGTTTGCTGCTTGTATAATATTCGTGGGACTGATGTTGATTACGGTCCAGTTGTTCATGCCTTTGCGATAGTTACTCTGAACTCAGCTTTCTTCTATGTAGACAAAAGGAAGGTTGAATCTGAGCAATTCAAGCCAAATTATACGGCACCACCTCCTCTATTTCATTACGGTGGTATTCTAATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGACTTGCAGAATCCTGGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAACGACCTTGATGATGAATATTCAGCTCCCTCTTCAAGAAGCTTGCTATGCTGCCGTATAGTTGCTATAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACAGTGAGTTTGGACAACTCTGTTCGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

300

Amino Acids

33.8

Weight (kDa)

8.81

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	149 - 190	2.7e-10	Creatinase/Prolidase N-terminal domain
DUF3675	PF12428	194 - 294	1.9e-32	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	2 cut(s)	59, 592
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	146
AciI	CCGC	4 cut(s)	74, 93, 124, 132
AclWI	GGATC	2 cut(s)	170, 183
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	713, 854
AfiI	CCNNNNNNNGG	5 cut(s)	56, 99, 120, 197, 691
AgsI	TTSAA	4 cut(s)	394, 563, 577, 756
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	7 cut(s)	82, 99, 289, 533, 746, 762, 845
AluI	AGCT	7 cut(s)	82, 99, 289, 533, 746, 762, 845
Alw26I	GTCTC	2 cut(s)	29, 657
AlwI	GGATC	2 cut(s)	170, 183
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	329, 453, 771
AseI	ATTAAT	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	62, 148
AspS9I	GGNCC	2 cut(s)	200, 491
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	2 cut(s)	46, 196
AvaII	GGWCC	2 cut(s)	200, 491
BamHI	GGATCC	1 cut(s)	175
BanI	GGYRCC	2 cut(s)	59, 592
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	341, 440, 758
BccI	CCATC	2 cut(s)	71, 305
BceAI	ACGGC	2 cut(s)	606, 759
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	29, 657
BfaI	CTAG	2 cut(s)	657, 686
BfmI	CTRYAG	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	4 cut(s)	93, 330, 454, 772
BlsI	GCNGC	4 cut(s)	94, 331, 455, 773
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	2 cut(s)	638, 678
Bme18I	GGWCC	2 cut(s)	200, 491
BmgT120I	GGNCC	2 cut(s)	200, 491
BmiI	GGNNCC	3 cut(s)	61, 177, 594
BmrFI	CCNGG	2 cut(s)	638, 678
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	13, 363, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 99, 120, 197, 691
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	4 cut(s)	258, 410, 494, 827
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	13, 363, 637
BseLI	CCNNNNNNNGG	5 cut(s)	56, 99, 120, 197, 691
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	287, 543, 558
BseNI	ACTGG	4 cut(s)	258, 410, 494, 827
BseRI	GAGGAG	1 cut(s)	591
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	341, 440, 758
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	2 cut(s)	59, 592
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	57, 89, 637
BslFI	GGGAC	2 cut(s)	33, 487
BslI	CCNNNNNNNGG	5 cut(s)	56, 99, 120, 197, 691
BsmAI	GTCTC	2 cut(s)	29, 657
BsmFI	GGGAC	2 cut(s)	33, 487
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	175, 278, 703
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	4 cut(s)	74, 93, 124, 132
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	286, 542, 559
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	61, 177, 594
BspMAI	CTGCAG	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	170, 183
BspT107I	GGYRCC	2 cut(s)	59, 592
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	4 cut(s)	258, 410, 494, 827
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	13, 363, 637
BssMI	GATC	3 cut(s)	175, 278, 703
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	6 cut(s)	23, 184, 491, 617, 867, 874
Bst6I	CTCTTC	4 cut(s)	205, 329, 655, 757
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	5 cut(s)	76, 80, 97, 373, 764
BstDEI	CTNAG	3 cut(s)	273, 529, 567
BstDSI	CCRYGG	2 cut(s)	13, 363
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	62, 148
BstKTI	GATC	3 cut(s)	178, 281, 706
BstMAI	GTCTC	2 cut(s)	29, 657
BstMBI	GATC	3 cut(s)	175, 278, 703
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 577, 768
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	636, 676
BstSFI	CTRYAG	1 cut(s)	443
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	341, 440, 758
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	2 cut(s)	13, 363
BtgZI	GCGATG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	265, 863, 879
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	5 cut(s)	76, 80, 97, 373, 764
CfoI	GCGC	2 cut(s)	62, 148
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	200, 491
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	712, 853
CviAII	CATG	5 cut(s)	14, 346, 436, 503, 715
CviQI	GTAC	2 cut(s)	712, 853
DdeI	CTNAG	3 cut(s)	273, 529, 567
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	3 cut(s)	177, 280, 705
DpnII	GATC	3 cut(s)	175, 278, 703
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	4 cut(s)	205, 329, 655, 757
EarI	CTCTTC	4 cut(s)	205, 329, 655, 757
EciI	GGCGGA	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	200, 491
Eco52I	CGGCCG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	5 cut(s)	17, 349, 439, 506, 718
FaqI	GGGAC	2 cut(s)	33, 487
FatI	CATG	5 cut(s)	13, 345, 435, 502, 714
FauI	CCCGC	2 cut(s)	67, 125
FauNDI	CATATG	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	4 cut(s)	93, 330, 454, 772
Fsp4HI	GCNGC	4 cut(s)	93, 330, 454, 772
FspBI	CTAG	2 cut(s)	657, 686
GlaI	GCGC	2 cut(s)	61, 147
GluI	GCNGC	4 cut(s)	93, 330, 454, 772
GsuI	CTGGAG	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	3 cut(s)	57, 89, 637
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	62, 148
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	17, 349, 439, 506, 718
Hin6I	GCGC	2 cut(s)	60, 146
HinP1I	GCGC	2 cut(s)	60, 146
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	8 cut(s)	169, 193, 215, 283, 439, 563, 673, 681
HpaII	CCGG	3 cut(s)	57, 89, 637
HphI	GGTGA	2 cut(s)	46, 196
Hpy166II	GTNNAC	2 cut(s)	547, 870
Hpy188I	TCNGA	8 cut(s)	180, 204, 220, 276, 358, 382, 525, 568
Hpy188III	TCNNGA	4 cut(s)	173, 657, 707, 756
Hpy8I	GTNNAC	2 cut(s)	547, 870
Hpy99I	CGWCG	3 cut(s)	155, 167, 184
HpyAV	CCTTC	4 cut(s)	114, 333, 400, 550
HpyCH4III	ACNGT	6 cut(s)	23, 184, 491, 617, 867, 874
HpyCH4V	TGCA	3 cut(s)	375, 445, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 577, 768
HpyF3I	CTNAG	3 cut(s)	273, 529, 567
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	17, 349, 439, 506, 718
HspAI	GCGC	2 cut(s)	60, 146
KasI	GGCGCC	1 cut(s)	59
Kzo9I	GATC	3 cut(s)	175, 278, 703
LmnI	GCTCC	2 cut(s)	751, 842
Lsp1109I	GCAGC	3 cut(s)	341, 440, 758
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	657, 686
MaeIII	GTNAC	2 cut(s)	517, 694
MalI	GATC	3 cut(s)	177, 280, 705
MboI	GATC	3 cut(s)	175, 278, 703
MboII	GAAGA	8 cut(s)	219, 222, 261, 346, 529, 672, 744, 794
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	6 cut(s)	395, 399, 572, 583, 643, 834
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	202, 433
MmeI	TCCRAC	3 cut(s)	138, 203, 405
MseI	TTAA	2 cut(s)	36, 398
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	3 cut(s)	57, 89, 637
MspR9I	CCNGG	2 cut(s)	638, 678
MvaI	CCWGG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	152, 577, 768
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	638
NcoI	CCATGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	819
NdeII	GATC	3 cut(s)	175, 278, 703
NlaIII	CATG	5 cut(s)	17, 349, 439, 506, 718
NlaIV	GGNNCC	3 cut(s)	61, 177, 594
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 188, 312
PfeI	GAWTC	6 cut(s)	169, 215, 283, 563, 673, 681
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	94, 331, 455, 773
PleI	GAGTC	2 cut(s)	201, 433
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	2 cut(s)	201, 433
PshBI	ATTAAT	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	61, 177, 594
PspPI	GGNCC	2 cut(s)	200, 491
PstI	CTGCAG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	713, 854
RsaNI	GTAC	2 cut(s)	712, 853
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	36, 398
SatI	GCNGC	4 cut(s)	93, 330, 454, 772
Sau3AI	GATC	3 cut(s)	175, 278, 703
Sau96I	GGNCC	2 cut(s)	200, 491
ScaI	AGTACT	1 cut(s)	854
SchI	GAGTC	2 cut(s)	202, 433
ScrFI	CCNGG	2 cut(s)	638, 678
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	443
SfoI	GGCGCC	1 cut(s)	61
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	200, 491
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	6 cut(s)	395, 399, 572, 583, 643, 834
SsiI	CCGC	4 cut(s)	74, 93, 124, 132
SspDI	GGCGCC	1 cut(s)	59
SspI	AATATT	2 cut(s)	466, 740
SspMI	CTAG	2 cut(s)	657, 686
StyD4I	CCNGG	2 cut(s)	636, 676
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	6 cut(s)	23, 184, 491, 617, 867, 874
TaqI	TCGA	2 cut(s)	196, 281
TasI	AATT	6 cut(s)	395, 399, 572, 583, 643, 834
TatI	WGTACW	2 cut(s)	711, 852
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	6 cut(s)	169, 215, 283, 563, 673, 681
Tru1I	TTAA	2 cut(s)	36, 398
Tru9I	TTAA	2 cut(s)	36, 398
TscAI	CASTG	3 cut(s)	265, 870, 879
TseI	GCWGC	3 cut(s)	329, 453, 771
TspDTI	ATGAA	5 cut(s)	491, 599, 644, 731, 750
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	3 cut(s)	265, 870, 879
VpaK11BI	GGWCC	2 cut(s)	200, 491
VspI	ATTAAT	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	657, 686
ZrmI	AGTACT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.