Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Forward (+)

39591131 .. 39593824

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG348100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATTCTTCCCATAAAATAGACGTGAATACCCAGTCATCTGCTAGAAAATTTGTAGAATGTAGGATTTGCCATGATGAGGATGATGACTCAAACATGGAAGCACCATGTTCTTGCTGTGGTAGCTTGAAGTATGCTCACCGTAAGTGTGTTCAGAGGTGGTGCAACGAGAAGGGTGATACAATATGTGAGATTTGCCGCCAGCAATTCAAGCCAGATTATACGGCACCACCTCCTCTATTTCATTACGGTGGTATTCCAATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGACTTGCAGAATCCTGGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAACGACCTTGATGATGAATATTCAGCTCCCTCTTCGAGAAGCTTGCTATGCTGCCGTATAGTTGCTATAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACATTAATGATGTTGAGAACAATTGGGATTCTTTTTCCAATTTATATCTTAGTTAGAGCATTCACTGCTATCCGACGTCGACGACAACAACAGGATTCTCGAATTTCTCTTGGTGCATCAGATGAAGAAAATGACTTGGCATATCCGTCACGTTTTATTCAAATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

224

Amino Acids

25.74

Weight (kDa)

6.21

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	21 - 66	4.3e-13	RING-variant domain
DUF3675	PF12428	72 - 188	2.3e-43	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	583
AciI	CCGC	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	50, 606, 666
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	2 cut(s)	347, 488
AfiI	CCNNNNNNNGG	2 cut(s)	79, 325
AgsI	TTSAA	4 cut(s)	130, 211, 665, 671
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	126, 380, 396, 479
AluI	AGCT	4 cut(s)	126, 380, 396, 479
Alw26I	GTCTC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	3 cut(s)	50, 606, 666
AseI	ATTAAT	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	131, 188
BanI	GGYRCC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	392
BceAI	ACGGC	2 cut(s)	240, 393
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	3 cut(s)	45, 291, 320
BisI	GCNGC	2 cut(s)	199, 406
BlsI	GCNGC	2 cut(s)	200, 407
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	272, 312
BmgBI	CACGTC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	272, 312
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	629
BmuI	ACTGGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 325
Bse1I	ACTGG	2 cut(s)	34, 461
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	79, 325
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	34, 461
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	79, 325
BsmAI	GTCTC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	563
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	34, 461
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	143, 251, 501
Bst6I	CTCTTC	2 cut(s)	289, 391
BstACI	GRCGYC	1 cut(s)	580
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	203, 398
BstDEI	CTNAG	1 cut(s)	553
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 211, 402, 569
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	270, 310
BstV1I	GCAGC	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	497, 567
Cac8I	GCNNGC	2 cut(s)	203, 398
Csp6I	GTAC	2 cut(s)	346, 487
CviAII	CATG	4 cut(s)	74, 97, 108, 349
CviJI	RGCY	5 cut(s)	126, 214, 380, 396, 479
CviKI_1	RGCY	5 cut(s)	126, 214, 380, 396, 479
CviQI	GTAC	2 cut(s)	346, 487
DdeI	CTNAG	1 cut(s)	553
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	289, 391
EarI	CTCTTC	2 cut(s)	289, 391
EcoRII	CCWGG	1 cut(s)	310
FaeI	CATG	4 cut(s)	77, 100, 111, 352
FatI	CATG	4 cut(s)	73, 96, 107, 348
FauNDI	CATATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	199, 406
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	199, 406
FspBI	CTAG	3 cut(s)	45, 291, 320
GluI	GCNGC	2 cut(s)	199, 406
GsuI	CTGGAG	1 cut(s)	501
HapII	CCGG	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	77, 100, 111, 352
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	6 cut(s)	5, 89, 307, 315, 532, 599
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	2 cut(s)	131, 188
Hpy166II	GTNNAC	2 cut(s)	504, 584
Hpy188I	TCNGA	3 cut(s)	156, 578, 625
Hpy188III	TCNNGA	4 cut(s)	291, 341, 390, 603
Hpy8I	GTNNAC	2 cut(s)	504, 584
Hpy99I	CGWCG	3 cut(s)	582, 585, 588
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	143, 251, 501
HpyCH4IV	ACGT	3 cut(s)	24, 580, 655
HpyCH4V	TGCA	3 cut(s)	165, 304, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 211, 402, 569
HpyF3I	CTNAG	1 cut(s)	553
HpySE526I	ACGT	3 cut(s)	24, 580, 655
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	4 cut(s)	77, 100, 111, 352
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	385, 476
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	3 cut(s)	45, 291, 320
MaeII	ACGT	3 cut(s)	24, 580, 655
MaeIII	GTNAC	2 cut(s)	328, 651
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	306, 378, 428, 641
MfeI	CAATTG	1 cut(s)	525
MluCI	AATT	8 cut(s)	50, 206, 277, 468, 525, 543, 606, 666
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	73, 150, 243, 246, 394
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	249, 509
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	272, 312
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	123, 211, 402, 569
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	4 cut(s)	77, 100, 111, 352
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	651
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	5 cut(s)	5, 307, 315, 532, 599
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	200, 407
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	228
RsaI	GTAC	2 cut(s)	347, 488
RsaNI	GTAC	2 cut(s)	346, 487
RseI	CAYNNNNRTG	2 cut(s)	249, 509
SalI	GTCGAC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	2 cut(s)	199, 406
Sau3AI	GATC	1 cut(s)	337
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	272, 312
SfaNI	GCATC	1 cut(s)	629
SgrDI	CGTCGACG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	249, 509
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	8 cut(s)	50, 206, 277, 468, 525, 543, 606, 666
SsiI	CCGC	1 cut(s)	199
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	3 cut(s)	45, 291, 320
StyD4I	CCNGG	2 cut(s)	270, 310
TaaI	ACNGT	3 cut(s)	143, 251, 501
TaiI	ACGT	3 cut(s)	27, 583, 658
TaqI	TCGA	3 cut(s)	389, 583, 604
TasI	AATT	8 cut(s)	50, 206, 277, 468, 525, 543, 606, 666
TatI	WGTACW	2 cut(s)	345, 486
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	5 cut(s)	5, 307, 315, 532, 599
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	504, 574
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	5 cut(s)	233, 278, 365, 384, 642
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	2 cut(s)	504, 574
VspI	ATTAAT	1 cut(s)	509
XapI	RAATTY	3 cut(s)	50, 606, 666
XbaI	TCTAGA	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	3 cut(s)	45, 291, 320
ZraI	GACGTC	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.