Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Forward (+)

39232080 .. 39234688

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG345700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATTCTTCCCATAAAATAGACGTGAATACCCAGTCATCTGCTAGAAAATTTGTAGAATGTAGGATTTGCCACGATGAGGATGATGACTCAAACATGGAAGCACCATGTTCTTGCTGTGGTAGCTTGAAGTACGCTCACCGTAAGTGTGTTCAGAGGTGGTGCAACGAGAAGGGTGATACAATATGTGAGATTTGCCGCCGGTATGCCACTGCATTCATGTTTCTGAATTATACGGCACCACCTCCTCTATTTCATTACGGTGGTATTCCAATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGACTTGCAGAATCCTGGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAATGACCTTGATGATGAATATTCAGCTCCCTCTTCGAGAAGCTTGCTATGCTGCCGTATAGTTGCTATAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACATTAATGATGTTGAGAACAATTGGGATTCTTTTTCCAATTTATATCTTGGTTAGAGCATTCACTGCTATCCAACGTCGACGACAACAACAGGATTCTCGAATTTCTCTTGGTGCATCAGATGAAGAAAATGACTTGGCATATCCATCACGTTTTATTCAAATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

228

Amino Acids

26.18

Weight (kDa)

6.21

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	21 - 66	4.4e-13	RING-variant domain
DUF3675	PF12428	77 - 192	1.9e-42	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	595
AciI	CCGC	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	50, 618, 678
AfaI	GTAC	3 cut(s)	134, 359, 500
AfiI	CCNNNNNNNGG	2 cut(s)	79, 337
AgsI	TTSAA	3 cut(s)	130, 677, 683
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	4 cut(s)	126, 392, 408, 491
AluI	AGCT	4 cut(s)	126, 392, 408, 491
Alw26I	GTCTC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	3 cut(s)	50, 618, 678
AseI	ATTAAT	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	131, 188
BanI	GGYRCC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	2 cut(s)	252, 405
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	3 cut(s)	45, 303, 332
BisI	GCNGC	2 cut(s)	199, 418
BlsI	GCNGC	2 cut(s)	200, 419
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	2 cut(s)	284, 324
BmgBI	CACGTC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	284, 324
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 337
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	34, 473
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	79, 337
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	34, 473
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	202, 283
BslI	CCNNNNNNNGG	2 cut(s)	79, 337
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	2 cut(s)	215, 575
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	34, 473
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	143, 263, 513
Bst6I	CTCTTC	2 cut(s)	301, 403
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 414, 581
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	282, 322
BstV1I	GCAGC	1 cut(s)	404
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	2 cut(s)	210, 579
BtsIMutI	CAGTG	3 cut(s)	210, 509, 579
Cac8I	GCNNGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	133, 358, 499
CviAII	CATG	4 cut(s)	97, 108, 220, 361
CviJI	RGCY	4 cut(s)	126, 392, 408, 491
CviKI_1	RGCY	4 cut(s)	126, 392, 408, 491
CviQI	GTAC	3 cut(s)	133, 358, 499
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	301, 403
EarI	CTCTTC	2 cut(s)	301, 403
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	100, 111, 223, 364
FatI	CATG	4 cut(s)	96, 107, 219, 360
FauNDI	CATATG	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	199, 418
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	199, 418
FspBI	CTAG	3 cut(s)	45, 303, 332
GluI	GCNGC	2 cut(s)	199, 418
GsuI	CTGGAG	1 cut(s)	513
HapII	CCGG	2 cut(s)	202, 283
Hin1II	CATG	4 cut(s)	100, 111, 223, 364
HincII	GTYRAC	1 cut(s)	596
HindII	GTYRAC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	6 cut(s)	5, 89, 319, 327, 544, 611
HpaII	CCGG	2 cut(s)	202, 283
HphI	GGTGA	2 cut(s)	131, 188
Hpy166II	GTNNAC	2 cut(s)	516, 596
Hpy188I	TCNGA	3 cut(s)	156, 228, 637
Hpy188III	TCNNGA	4 cut(s)	303, 353, 402, 615
Hpy8I	GTNNAC	2 cut(s)	516, 596
Hpy99I	CGWCG	2 cut(s)	597, 600
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	143, 263, 513
HpyCH4IV	ACGT	3 cut(s)	24, 592, 667
HpyCH4V	TGCA	4 cut(s)	165, 215, 316, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 414, 581
HpySE526I	ACGT	3 cut(s)	24, 592, 667
Hsp92II	CATG	4 cut(s)	100, 111, 223, 364
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	397, 488
LpnPI	CCDG	9 cut(s)	47, 215, 296, 309, 336, 437, 477, 486, 593
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	3 cut(s)	45, 303, 332
MaeII	ACGT	3 cut(s)	24, 592, 667
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	318, 390, 440, 653
MfeI	CAATTG	1 cut(s)	537
MluCI	AATT	8 cut(s)	50, 229, 289, 480, 537, 555, 618, 678
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	5 cut(s)	73, 150, 255, 258, 406
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	2 cut(s)	261, 521
MspI	CCGG	2 cut(s)	202, 283
MspR9I	CCNGG	2 cut(s)	284, 324
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	2 cut(s)	215, 575
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	123, 414, 581
NciI	CCSGG	1 cut(s)	284
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	100, 111, 223, 364
NlaIV	GGNNCC	1 cut(s)	240
PctI	GAATGC	2 cut(s)	215, 575
PfeI	GAWTC	5 cut(s)	5, 319, 327, 544, 611
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	200, 419
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	240
RsaI	GTAC	3 cut(s)	134, 359, 500
RsaNI	GTAC	3 cut(s)	133, 358, 499
RseI	CAYNNNNRTG	2 cut(s)	261, 521
SalI	GTCGAC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	2 cut(s)	199, 418
Sau3AI	GATC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	284, 324
SfaNI	GCATC	1 cut(s)	641
SgrDI	CGTCGACG	1 cut(s)	594
SmiMI	CAYNNNNRTG	2 cut(s)	261, 521
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	8 cut(s)	50, 229, 289, 480, 537, 555, 618, 678
SsiI	CCGC	1 cut(s)	199
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	3 cut(s)	45, 303, 332
StyD4I	CCNGG	2 cut(s)	282, 322
TaaI	ACNGT	3 cut(s)	143, 263, 513
TaiI	ACGT	3 cut(s)	27, 595, 670
TaqI	TCGA	3 cut(s)	401, 595, 616
TasI	AATT	8 cut(s)	50, 229, 289, 480, 537, 555, 618, 678
TatI	WGTACW	2 cut(s)	357, 498
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	5 cut(s)	5, 319, 327, 544, 611
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	3 cut(s)	217, 516, 586
TseI	GCWGC	1 cut(s)	417
TspDTI	ATGAA	6 cut(s)	208, 245, 290, 377, 396, 654
TspRI	CASTG	3 cut(s)	217, 516, 586
VspI	ATTAAT	1 cut(s)	521
XapI	RAATTY	3 cut(s)	50, 618, 678
XbaI	TCTAGA	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	3 cut(s)	45, 303, 332
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.