Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005985

Physical Location & Seq

Genomic Coordinates Reverse (-)

50083067 .. 50085963

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAACTTCCGGGGGAATTGGGAGATTTCTAGAAGAGACTTGCAGAATCCTGGATTCCTAGCAATGGTTACTACTGATCTTGAGTACATGAATAACGACCTTGATGATGAATATTCAGCTCCCTCTTCAAGAAGCTTGCTATGCTGCCGTATAGTTGCTATAACTTTTATGGTTCTTCTGGTTTTACGCCATATGCTTCCAGTCATAATTAGTGGAGCTGGAGAGTACTCATTGACACTGTTCACAGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002520 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030097 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

84

Amino Acids

9.53

Weight (kDa)

4.79

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3675	PF12428	1 - 83	5.5e-26	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38070
malus_domestica	MD09G1259600.v1.1
prunus_persica	Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1 Prupe.3G151200_v2.0.a1
pyrus_communis	pycom09g17430
rosa_chinensis	RchiOBHm_Chr2g0133281 RchiOBHm_Chr2g0133341 RchiOBHm_Chr3g0493641
rosa_laevigata	RLG00000022700
rosa_multiflora	Rmu_sc0000568.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271530 Rroxscaffold_6G00391410
rosa_rugosa	Rorug03G0263100
rosa_samantha	Rh3AG311900 Rh3BG347900 Rh3CG345700 Rh3DG348100
rosa_wichuraiana	Rw3G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	86, 227
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	119, 135, 218
AluI	AGCT	3 cut(s)	119, 135, 218
Alw26I	GTCTC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	30, 59
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	11, 51
BmrFI	CCNGG	2 cut(s)	11, 51
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	240, 247
Bst6I	CTCTTC	2 cut(s)	28, 130
BstC8I	GCNNGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	9, 49
BstV1I	GCAGC	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	85, 226
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	119, 135, 218
CviKI_1	RGCY	3 cut(s)	119, 135, 218
CviQI	GTAC	2 cut(s)	85, 226
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	28, 130
EarI	CTCTTC	2 cut(s)	28, 130
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	91
FaiI	YATR	8 cut(s)	89, 142, 152, 161, 170, 192, 194, 206
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	30, 59
GluI	GCNGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	2 cut(s)	46, 54
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	3 cut(s)	30, 80, 129
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	240, 247
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	124, 215
LpnPI	CCDG	6 cut(s)	23, 36, 63, 164, 204, 213
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	30, 59
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	45, 117, 167
MluCI	AATT	2 cut(s)	16, 207
MnlI	CCTC	1 cut(s)	133
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	11, 51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	46, 54
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	86, 227
RsaNI	GTAC	2 cut(s)	85, 226
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	11, 51
SetI	ASST	4 cut(s)	102, 121, 137, 220
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	16, 207
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	30, 59
StyD4I	CCNGG	2 cut(s)	9, 49
TaaI	ACNGT	2 cut(s)	240, 247
TasI	AATT	2 cut(s)	16, 207
TatI	WGTACW	2 cut(s)	84, 225
TfiI	GAWTC	2 cut(s)	46, 54
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	3 cut(s)	17, 104, 123
TspRI	CASTG	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	2 cut(s)	30, 59
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.