AT5G39200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013173
Physical Location & Seq
Reverse (-)
15694238 .. 15695042
805 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39200.1

Sequence Viewer

Length: 606 bp
ATGGACCAGGAAACTAAACCAGGCTATGAACCGGATCGGATTCCACATTCGGTTTTTGCAACCTCGGTAACTCCAAAACAAGAATGGAGTATCCAATCGAACGAGTCTTTGTTCAGTATTCACATGGGAGACCATAGTTTCTCCAAGATGTATAAATCTGGAGAACTCACCAATTTCGAATATACTGCTTCGCCCTATATTAGCTACTATAACAATAACATTGATAACAAAATTGCTCCGACTGACGCTGGAACCAAAGAAGTCAATATAACCATGGTGGAAACCGGACCAAAAACCGGTAATCGAGATGGCTTAACCAATGTTCCTAAACCGGATCCACGACAACAGATTCCTATTTCTCCAACCAAGTCTTGTCACTCCGAAACAAGTAATAACAGTACAACTTCTTTCGCATTTCCCACATTAGGAGAGTACCAACAAGAGCGAAAGACATCACTAAACACGAAGAGTGAAAGTGGAAAAAGAGAACTATCAAGACTTGACTCGAAGACCGGATTGTACCCGGATGATTCGAAACAGGGCGGTGCTGGTGCTGGTGCTGGTGGTTGGCTTTCTTGTTGTCTCTGTTTTTCGGTGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

6.09

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 543
AclWI GGATC 3 cut(s) 42, 329, 342
AfaI GTAC 3 cut(s) 400, 434, 521
AfiI CCNNNNNNNGG 2 cut(s) 296, 425
AgeI ACCGGT 1 cut(s) 296
AjnI CCWGG 2 cut(s) 6, 19
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 123, 587
AlwI GGATC 3 cut(s) 42, 329, 342
AsiGI ACCGGT 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 4, 287
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 160
AsuII TTCGAA 2 cut(s) 177, 533
AvaII GGWCC 2 cut(s) 4, 287
BamHI GGATCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 515
BccI CCATC 1 cut(s) 302
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 8, 21
BciVI GTATCC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 2 cut(s) 123, 587
BfuI GTATCC 1 cut(s) 101
Bme1390I CCNGG 3 cut(s) 8, 21, 524
Bme18I GGWCC 2 cut(s) 4, 287
BmgT120I GGNCC 2 cut(s) 4, 287
BmiI GGNNCC 2 cut(s) 253, 336
BmrFI CCNGG 3 cut(s) 8, 21, 524
BpiI GAAGAC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 180
Bpu14I TTCGAA 2 cut(s) 177, 533
BpuMI CCSGG 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 63, 273
BsaWI WCCGGW 5 cut(s) 31, 284, 296, 331, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 425
Bse118I RCCGGY 1 cut(s) 296
BseBI CCWGG 2 cut(s) 8, 21
BseDI CCNNGG 2 cut(s) 63, 273
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 296, 425
BshTI ACCGGT 1 cut(s) 296
BsiSI CCGG 6 cut(s) 32, 285, 297, 332, 513, 524
BslI CCNNNNNNNGG 2 cut(s) 296, 425
BsmAI GTCTC 2 cut(s) 123, 587
Bso31I GGTCTC 1 cut(s) 123
Bsp119I TTCGAA 2 cut(s) 177, 533
Bsp143I GATC 2 cut(s) 34, 334
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 253, 336
BspPI GGATC 3 cut(s) 42, 329, 342
BspT104I TTCGAA 2 cut(s) 177, 533
BspTNI GGTCTC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 63, 273
BssMI GATC 2 cut(s) 34, 334
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 8, 21
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 461
BstBI TTCGAA 2 cut(s) 177, 533
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 2 cut(s) 37, 337
BstMAI GTCTC 2 cut(s) 123, 587
BstMBI GATC 2 cut(s) 34, 334
BstNI CCWGG 2 cut(s) 8, 21
BstSCI CCNGG 3 cut(s) 6, 19, 522
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 1 cut(s) 532
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 4, 287
CseI GACGC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 399, 433, 520
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 2 cut(s) 124, 274
CviJI RGCY 4 cut(s) 24, 204, 312, 571
CviKI_1 RGCY 4 cut(s) 24, 204, 312, 571
CviQI GTAC 3 cut(s) 399, 433, 520
DpnI GATC 2 cut(s) 36, 336
DpnII GATC 2 cut(s) 34, 334
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 4, 287
EcoRII CCWGG 2 cut(s) 6, 19
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 127, 277
FaiI YATR 9 cut(s) 27, 125, 135, 153, 183, 198, 210, 269, 275
FatI CATG 2 cut(s) 123, 273
FokI GGATG 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 180
HapII CCGG 6 cut(s) 32, 285, 297, 332, 513, 524
HgaI GACGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 127, 277
HinfI GANTC 5 cut(s) 40, 104, 349, 503, 530
HpaII CCGG 6 cut(s) 32, 285, 297, 332, 513, 524
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 39, 240, 382
Hpy188III TCNNGA 3 cut(s) 159, 305, 495
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 1 cut(s) 59
Hsp92II CATG 2 cut(s) 127, 277
Kzo9I GATC 2 cut(s) 34, 334
LmnI GCTCC 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 67, 374
MalI GATC 2 cut(s) 36, 336
MboI GATC 2 cut(s) 34, 334
MboII GAAGA 2 cut(s) 478, 520
MflI RGATCY 1 cut(s) 334
MluCI AATT 3 cut(s) 172, 231, 601
MlyI GAGTC 2 cut(s) 113, 497
MmeI TCCRAC 2 cut(s) 263, 386
MnlI CCTC 1 cut(s) 73
MseI TTAA 1 cut(s) 314
MspI CCGG 6 cut(s) 32, 285, 297, 332, 513, 524
MspR9I CCNGG 3 cut(s) 8, 21, 524
MvaI CCWGG 2 cut(s) 8, 21
NciI CCSGG 1 cut(s) 524
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 34, 334
NlaIII CATG 2 cut(s) 127, 277
NlaIV GGNNCC 2 cut(s) 253, 336
NmuCI GTSAC 1 cut(s) 374
NspV TTCGAA 2 cut(s) 177, 533
PfeI GAWTC 3 cut(s) 40, 349, 530
PinAI ACCGGT 1 cut(s) 296
PleI GAGTC 2 cut(s) 112, 497
PpsI GAGTC 2 cut(s) 112, 497
Psp6I CCWGG 2 cut(s) 6, 19
PspGI CCWGG 2 cut(s) 6, 19
PspN4I GGNNCC 2 cut(s) 253, 336
PspPI GGNCC 2 cut(s) 4, 287
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 3 cut(s) 400, 434, 521
RsaNI GTAC 3 cut(s) 399, 433, 520
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 2 cut(s) 34, 334
Sau96I GGNCC 2 cut(s) 4, 287
SchI GAGTC 2 cut(s) 113, 497
ScrFI CCNGG 3 cut(s) 8, 21, 524
SetI ASST 2 cut(s) 65, 206
SfuI TTCGAA 2 cut(s) 177, 533
SinI GGWCC 2 cut(s) 4, 287
Sse9I AATT 3 cut(s) 172, 231, 601
SsiI CCGC 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 6, 19, 522
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 5 cut(s) 98, 177, 304, 506, 533
TasI AATT 3 cut(s) 172, 231, 601
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 3 cut(s) 40, 349, 530
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 4, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.