MD09G1067000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013173
Physical Location & Seq
Forward (+)
4552515 .. 4553414
900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1067000.v1.1.491

Sequence Viewer

Length: 900 bp
ATGGATGATGCATATAGGGATGAATGTGGTAATAAGCATCTAAGGGTGAATTTTGAAAGCGATGCGGTTAATTACCGCCGAAATTCAAGCTTCCCATCATCCTCGAAATCATCACCATCATCACCATCATCATCATCATCGTCATCTCCACGTTCATCGCTGGAATCATTTGTCAATGACAAAAAAGATGGCAACAATCCCTGCGTAACAAGGACACGACCAGACCAGGAGTCTCAGGGGGCTCTATCATTACCAGAGGGTTATTCTTCTCCGAGTCTGCCTGGGAGCATGCAAAGCGGATCATCTGCGCAATCCTCTCCGTTTCAGATGATGGGAAGGCCTGCAGGTTATGACCCGAGTCGAATCCCATCGAATATTTTCGCCAGTAAACCGCCAGCAGGCATGGATTGGAGTGTTGCTTCAAATGAATCATTGTTTAGTCTTCATGTGGGGAACAACAGCTTCTCGAGAGATCAATTCGCTTTGCTGAATAAGTCCGGAGAGCTTTACAAATCCGGAGAGCTTTATAAATCCGGTGAACTGACGAGGCATGATGAATACATCTACATTCCAACTCCACTTCCCACAGTTACTGAGGTAGAAACTATTGAAATAAAGATTCACAATGTGGGGAAAGAGAAGGTTGAAAACAGGGCTCCGAACATGGAGGCGAAAATCGAAGAAAATGAGAGTGCAAATGTGGAATATAAGGTTGAAAGCATGAGGGAAAATGTGGAAACGGAATCAGTAGAAGAAACAGAAGGACCAGATGAATCTGCAAATGCAAAAGCCGTAAAAAAGGAAAAGGTGCCTCTTATCGGAGAAATTCGGAATTCTGCTGCTTCATACCAATCTGATGGGAGCAATAACAGCACCAAGTCATTCCAGTTTCCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

32.72

Weight (kDa)

5.04

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
Acc16I TGCGCA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 808
AccIII TCCGGA 2 cut(s) 497, 515
AciI CCGC 4 cut(s) 65, 76, 297, 392
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 4 cut(s) 49, 82, 825, 832
AdeI CACNNNGTG 1 cut(s) 628
AfiI CCNNNNNNNGG 2 cut(s) 398, 818
AgsI TTSAA 6 cut(s) 56, 87, 423, 611, 647, 716
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 225, 280
AluBI AGCT 4 cut(s) 90, 462, 505, 523
AluI AGCT 4 cut(s) 90, 462, 505, 523
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 307
AlwNI CAGNNNCTG 1 cut(s) 593
Ama87I CYCGRG 2 cut(s) 355, 466
Aor13HI TCCGGA 2 cut(s) 497, 515
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 839
ApoI RAATTY 4 cut(s) 49, 82, 825, 832
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 764
AsuHPI GGTGA 4 cut(s) 58, 105, 114, 548
AvaI CYCGRG 2 cut(s) 355, 466
AvaII GGWCC 1 cut(s) 764
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 2 cut(s) 244, 658
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 826
BccI CCATC 7 cut(s) 103, 124, 133, 182, 325, 376, 851
BceAI ACGGC 1 cut(s) 776
BciT130I CCWGG 2 cut(s) 227, 282
BcoDI GTCTC 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 1 cut(s) 840
BlsI GCNGC 1 cut(s) 841
Bme1390I CCNGG 2 cut(s) 227, 282
Bme18I GGWCC 1 cut(s) 764
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 2 cut(s) 355, 466
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 2 cut(s) 657, 810
BmrFI CCNGG 2 cut(s) 227, 282
BmsI GCATC 2 cut(s) 46, 52
BoxI GACNNNNGTC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 3 cut(s) 497, 515, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 818
Bse1I ACTGG 3 cut(s) 384, 886, 893
BseAI TCCGGA 2 cut(s) 497, 515
BseBI CCWGG 2 cut(s) 227, 282
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 3 cut(s) 10, 25, 98
BseLI CCNNNNNNNGG 2 cut(s) 398, 818
BseMII CTCAG 2 cut(s) 248, 585
BseNI ACTGG 3 cut(s) 384, 886, 893
BseXI GCAGC 1 cut(s) 826
BshFI GGCC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 808
BsiHKCI CYCGRG 2 cut(s) 355, 466
BsiSI CCGG 3 cut(s) 498, 516, 534
BslI CCNNNNNNNGG 2 cut(s) 398, 818
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 1 cut(s) 340
BsoBI CYCGRG 2 cut(s) 355, 466
Bsp1286I GDGCHC 2 cut(s) 244, 658
Bsp13I TCCGGA 2 cut(s) 497, 515
Bsp143I GATC 2 cut(s) 299, 472
BspACI CCGC 4 cut(s) 65, 76, 297, 392
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 2 cut(s) 247, 586
BspEI TCCGGA 2 cut(s) 497, 515
BspLI GGNNCC 2 cut(s) 657, 810
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 335
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 808
BsrI ACTGG 3 cut(s) 384, 886, 893
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 299, 472
Bst2UI CCWGG 2 cut(s) 227, 282
Bst4CI ACNGT 1 cut(s) 589
BstC8I GCNNGC 4 cut(s) 290, 342, 396, 400
BstDEI CTNAG 3 cut(s) 41, 234, 594
BstF5I GGATG 3 cut(s) 10, 25, 98
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 2 cut(s) 302, 475
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 299, 472
BstMWI GCNNNNNNNGC 2 cut(s) 294, 870
BstNI CCWGG 2 cut(s) 227, 282
BstNSI RCATGY 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 225, 280
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 826
BstV2I GAAGAC 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 857
BsuRI GGCC 1 cut(s) 340
BtgZI GCGATG 2 cut(s) 75, 141
BtsCI GGATG 3 cut(s) 10, 25, 98
BtsIMutI CAGTG 1 cut(s) 900
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 4 cut(s) 290, 342, 396, 400
CaiI CAGNNNCTG 1 cut(s) 593
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 764
CviAII CATG 6 cut(s) 289, 403, 446, 551, 664, 721
CviJI RGCY 8 cut(s) 90, 242, 340, 462, 505, 523, 656, 791
CviKI_1 RGCY 8 cut(s) 90, 242, 340, 462, 505, 523, 656, 791
DdeI CTNAG 3 cut(s) 41, 234, 594
DpnI GATC 2 cut(s) 301, 474
DpnII GATC 2 cut(s) 299, 472
DraIII CACNNNGTG 1 cut(s) 628
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 2 cut(s) 244, 658
Eco47I GGWCC 1 cut(s) 764
Eco88I CYCGRG 2 cut(s) 355, 466
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 2 cut(s) 225, 280
EcoT22I ATGCAT 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 244, 658
FaeI CATG 6 cut(s) 292, 406, 449, 554, 667, 724
FatI CATG 6 cut(s) 288, 402, 445, 550, 663, 720
Fnu4HI GCNGC 1 cut(s) 840
FokI GGATG 3 cut(s) 17, 32, 85
FriOI GRGCYC 2 cut(s) 244, 658
Fsp4HI GCNGC 1 cut(s) 840
FspI TGCGCA 1 cut(s) 309
GlaI GCGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 840
HaeIII GGCC 1 cut(s) 340
HapII CCGG 3 cut(s) 498, 516, 534
HhaI GCGC 1 cut(s) 310
Hin1II CATG 6 cut(s) 292, 406, 449, 554, 667, 724
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 9 cut(s) 164, 230, 274, 358, 363, 428, 619, 743, 773
HpaII CCGG 3 cut(s) 498, 516, 534
HphI GGTGA 4 cut(s) 58, 105, 114, 548
Hpy166II GTNNAC 2 cut(s) 389, 539
Hpy188I TCNGA 6 cut(s) 273, 327, 660, 821, 831, 856
Hpy188III TCNNGA 4 cut(s) 466, 468, 498, 516
Hpy8I GTNNAC 2 cut(s) 389, 539
HpyAV CCTTC 3 cut(s) 330, 634, 755
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 6 cut(s) 11, 292, 344, 695, 779, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 870
HpyF3I CTNAG 3 cut(s) 41, 234, 594
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 6 cut(s) 292, 406, 449, 554, 667, 724
HspAI GCGC 1 cut(s) 308
Kpn2I TCCGGA 2 cut(s) 497, 515
Kzo9I GATC 2 cut(s) 299, 472
LmnI GCTCC 3 cut(s) 285, 661, 861
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 2 cut(s) 46, 52
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 205, 589
MalI GATC 2 cut(s) 301, 474
MboI GATC 2 cut(s) 299, 472
MboII GAAGA 4 cut(s) 258, 434, 692, 764
MhlI GDGCHC 2 cut(s) 244, 658
MluCI AATT 6 cut(s) 49, 70, 82, 476, 825, 832
MlyI GAGTC 3 cut(s) 239, 283, 367
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 8 cut(s) 112, 250, 325, 540, 589, 661, 717, 822
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 2 cut(s) 497, 515
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 1 cut(s) 69
MspI CCGG 3 cut(s) 498, 516, 534
MspR9I CCNGG 2 cut(s) 227, 282
MvaI CCWGG 2 cut(s) 227, 282
MwoI GCNNNNNNNGC 2 cut(s) 294, 870
NdeII GATC 2 cut(s) 299, 472
NlaIII CATG 6 cut(s) 292, 406, 449, 554, 667, 724
NlaIV GGNNCC 2 cut(s) 657, 810
NsbI TGCGCA 1 cut(s) 309
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 292
PaeI GCATGC 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 466
PceI AGGCCT 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 6 cut(s) 164, 363, 428, 619, 743, 773
PkrI GCNGC 1 cut(s) 841
PleI GAGTC 3 cut(s) 238, 282, 366
PpsI GAGTC 3 cut(s) 238, 282, 366
PshAI GACNNNNGTC 1 cut(s) 357
PsiI TTATAA 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 225, 280
PspGI CCWGG 2 cut(s) 225, 280
PspN4I GGNNCC 2 cut(s) 657, 810
PspPI GGNCC 1 cut(s) 764
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 593
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 840
Sau3AI GATC 2 cut(s) 299, 472
Sau96I GGNCC 1 cut(s) 764
SbfI CCTGCAGG 1 cut(s) 346
SchI GAGTC 3 cut(s) 239, 283, 367
ScrFI CCNGG 2 cut(s) 227, 282
SdaI CCTGCAGG 1 cut(s) 346
SduI GDGCHC 2 cut(s) 244, 658
SfaNI GCATC 2 cut(s) 46, 52
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 466
SinI GGWCC 1 cut(s) 764
SlaI CTCGAG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
SphI GCATGC 1 cut(s) 292
Sse8387I CCTGCAGG 1 cut(s) 346
Sse9I AATT 6 cut(s) 49, 70, 82, 476, 825, 832
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 4 cut(s) 65, 76, 297, 392
SspI AATATT 1 cut(s) 376
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 225, 280
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 1 cut(s) 154
TaqI TCGA 5 cut(s) 104, 361, 371, 467, 678
TasI AATT 6 cut(s) 49, 70, 82, 476, 825, 832
TfiI GAWTC 6 cut(s) 164, 363, 428, 619, 743, 773
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 900
TseI GCWGC 1 cut(s) 839
TspDTI ATGAA 7 cut(s) 36, 144, 434, 441, 570, 786, 834
TspGWI ACGGA 2 cut(s) 309, 755
TspRI CASTG 1 cut(s) 900
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 4 cut(s) 49, 82, 825, 832
XceI RCATGY 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.