Rw2G048680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013173
Physical Location & Seq
Reverse (-)
76238101 .. 76238895
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048680.1

Sequence Viewer

Length: 795 bp
ATGGCTTATGCATATAGCGATGAAAGTAATAAGCACCTAAAGGTTCATTTCGCATCTGAACCCATAAATCGCTGCCCGAGTTCAAGCTGCTACACATCTTCTTCTTGTTCCTCCTCATCATCTTCATCACTGGACGAACCATATGATATTGACAAAGCTGAGGTTGATCCGTCTCCCGAAGCTAAACAACCGGACCTAAATGAGCCTCCGGCGCCTGTGCCAGCGGTTACTTCACAGACTACTGTTTGGAGCACTGGGTCATCATCTTCACAATCTCCTCCTCAAATTCCAATGGCGGGCGGGCGGCCTTCGGGATATGATCCAAATCGACTCCCATCAGCTATGTTTGCTGCTAAGCCTTCATCTGCTATGGATTGGAGTGTTGCTTCAAATGAATCATTGTTTAGTATTCATGTGGGGAACAGCTTCTCAAGAGACCAGTATTTCGTCATGTTCAACAAGTCTGGAGAACTGGGGAAGCTTGATGAGATGTTCCTCAATGTTCCAACTCCGCTTTCCCCAGTTACCGAGACTGTAGAAACTAAGCCGAGTTCCAATGCGTTAGTAGAGACGCTTGAAACTGATCATCACAGTGTGGAGACGGAGAGTGTCGAAACTAAGAGTGAGATTTCGGAGGAAGAGAATGTTGTGATGGTGACCGGGAAGGTAGAGAAAGACAAAAAAACCAAAGAGACAGTTAGGCTGCCTACTATGGAGGAAACAAAGGGTTCTGCCTTCTCTCATCGTTCGAATGAGAGCAATTATAGTAATCAATCTTTCCAATTTCCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

28.75

Weight (kDa)

4.75

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AciI CCGC 5 cut(s) 224, 296, 300, 304, 512
AclWI GGATC 2 cut(s) 161, 314
AcsI RAATTY 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 84, 390, 457, 578
AjuI GAANNNNNNNTTGG 2 cut(s) 499, 531
AluBI AGCT 6 cut(s) 87, 158, 182, 341, 426, 481
AluI AGCT 6 cut(s) 87, 158, 182, 341, 426, 481
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 6 cut(s) 177, 429, 524, 563, 593, 686
AlwI GGATC 2 cut(s) 161, 314
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 4 cut(s) 72, 87, 350, 703
ApoI RAATTY 1 cut(s) 285
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 1 cut(s) 425
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 667
AsuII TTCGAA 1 cut(s) 749
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 254
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 4 cut(s) 59, 74, 337, 690
BccI CCATC 2 cut(s) 343, 646
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 6 cut(s) 177, 429, 524, 563, 593, 686
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 5 cut(s) 73, 88, 305, 351, 704
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 5 cut(s) 74, 89, 306, 352, 705
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 661
BmrI ACTGGG 3 cut(s) 264, 482, 515
BmsI GCATC 1 cut(s) 62
BmuI ACTGGG 3 cut(s) 264, 482, 515
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 661
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 6 cut(s) 135, 259, 439, 477, 521, 788
Bse8I GATNNNNATC 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 6 cut(s) 135, 259, 439, 477, 521, 788
BseRI GAGGAG 3 cut(s) 103, 267, 270
BseXI GCAGC 4 cut(s) 59, 74, 337, 690
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 3 cut(s) 191, 209, 660
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 6 cut(s) 177, 429, 524, 563, 593, 686
BsmBI CGTCTC 3 cut(s) 177, 563, 593
BsnI GGCC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 3 cut(s) 166, 319, 583
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 5 cut(s) 224, 296, 300, 304, 512
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 2 cut(s) 161, 314
BspT104I TTCGAA 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 429
BsrI ACTGG 6 cut(s) 135, 259, 439, 477, 521, 788
BssMI GATC 3 cut(s) 166, 319, 583
BssNI GRCGYC 1 cut(s) 212
Bst4CI ACNGT 4 cut(s) 244, 535, 593, 697
Bst6I CTCTTC 1 cut(s) 633
BstACI GRCGYC 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 749
BstC8I GCNNGC 3 cut(s) 222, 298, 302
BstDEI CTNAG 4 cut(s) 159, 354, 543, 618
BstEII GGTNACC 1 cut(s) 655
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 3 cut(s) 169, 322, 586
BstMAI GTCTC 6 cut(s) 177, 429, 524, 563, 593, 686
BstMBI GATC 3 cut(s) 166, 319, 583
BstMWI GCNNNNNNNGC 2 cut(s) 211, 347
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 59, 74, 337, 690
BsuRI GGCC 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 128, 252, 598, 795
Cac8I GCNNGC 3 cut(s) 222, 298, 302
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 580
CviAII CATG 2 cut(s) 413, 451
DdeI CTNAG 4 cut(s) 159, 354, 543, 618
DinI GGCGCC 1 cut(s) 213
DpnI GATC 3 cut(s) 168, 321, 585
DpnII GATC 3 cut(s) 166, 319, 583
DraIII CACNNNGTG 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco31I GGTCTC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 655
EcoO65I GGTNACC 1 cut(s) 655
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
Esp3I CGTCTC 3 cut(s) 177, 563, 593
FaeI CATG 2 cut(s) 416, 454
FatI CATG 2 cut(s) 412, 450
FauI CCCGC 2 cut(s) 289, 293
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 73, 88, 305, 351, 704
Fsp4HI GCNGC 5 cut(s) 73, 88, 305, 351, 704
GlaI GCGC 1 cut(s) 213
GluI GCNGC 5 cut(s) 73, 88, 305, 351, 704
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 1 cut(s) 307
HapII CCGG 3 cut(s) 191, 209, 660
HgaI GACGC 1 cut(s) 580
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 2 cut(s) 416, 454
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 2 cut(s) 330, 395
HpaII CCGG 3 cut(s) 191, 209, 660
HphI GGTGA 1 cut(s) 667
Hpy188I TCNGA 2 cut(s) 58, 634
Hpy188III TCNNGA 4 cut(s) 176, 312, 432, 465
HpyAV CCTTC 4 cut(s) 318, 369, 658, 745
HpyCH4III ACNGT 4 cut(s) 244, 535, 593, 697
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 347
HpyF3I CTNAG 4 cut(s) 159, 354, 543, 618
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 2 cut(s) 416, 454
HspAI GCGC 1 cut(s) 212
KasI GGCGCC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 3 cut(s) 166, 319, 583
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 4 cut(s) 59, 74, 337, 690
LweI GCATC 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 226, 523, 655
MalI GATC 3 cut(s) 168, 321, 585
MboI GATC 3 cut(s) 166, 319, 583
MboII GAAGA 5 cut(s) 90, 93, 114, 258, 650
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 3 cut(s) 285, 760, 782
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 9 cut(s) 121, 124, 154, 216, 288, 291, 506, 628, 709
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 191, 209, 660
MspR9I CCNGG 1 cut(s) 661
MwoI GCNNNNNNNGC 2 cut(s) 211, 347
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 142
NdeII GATC 3 cut(s) 166, 319, 583
NlaIII CATG 2 cut(s) 416, 454
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 655
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 749
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 5 cut(s) 74, 89, 306, 352, 705
PleI GAGTC 1 cut(s) 324
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 591
SatI GCNGC 5 cut(s) 73, 88, 305, 351, 704
Sau3AI GATC 3 cut(s) 166, 319, 583
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 661
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 1 cut(s) 534
SfoI GGCGCC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 749
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 3 cut(s) 285, 760, 782
SsiI CCGC 5 cut(s) 224, 296, 300, 304, 512
SspDI GGCGCC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 659
TaaI ACNGT 4 cut(s) 244, 535, 593, 697
TaqI TCGA 3 cut(s) 328, 612, 749
TasI AATT 3 cut(s) 285, 760, 782
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 395
TscAI CASTG 4 cut(s) 135, 259, 598, 795
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 4 cut(s) 72, 87, 350, 703
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 6 cut(s) 35, 36, 114, 351, 401, 408
TspGWI ACGGA 2 cut(s) 159, 617
TspRI CASTG 4 cut(s) 135, 259, 598, 795
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.