FvH4_6g46831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013173
Physical Location & Seq
Reverse (-)
35632025 .. 35633087
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46831.t1

Sequence Viewer

Length: 879 bp
ATGGCTTATGCATATAGCGACGAAAGTAACAAGCATCTAAAGGTTAATTTTGAATGTGATCGCATGAATCGCTGCCCTAGTTTAAGCTGCTACACATCTTCTTCTTGTTCCTTTTCATCACGTTCATCAATGGAAGAACCATATGATTTTGACAAGGCTGATTTTGATTTGTCTCCCGAAGCTAACCAACCGGACCTAACTGAGCCTCCGGCTCCTGCGCCATCACCAGAGGTTAGTCCACAGATCACTGTTCCTCAAATTCCAATGGCGAGCAGGCGGCCTTCAGGATATGATCCAACTAGACACCCACCAGCTATGTTTGCCGCTAAGCCTTCATCGGCTATGGATTGGAGTGTAGCTTCAAATGAATCATTGTTCAGTATTCATGTGGGGAATAGCAGCTTCTCAAAAGACCAGTATTCAAATGAACTGGGGAAGCTTGAAGAGATGGTAGAGACACTGGAAACTGATCGTCACAGTGTCAGTGTGGATACAAAGAGTATCGAAAGTAGGAGTGACATTTCGGAGGAAGAGAATTTTGATATTAACATTGTGACCGGGAATGTAGAGAAAGATGAGGAAACCGAAGAGACAATTAGGCTGCCTACTATAGAGGAAACAAAGGGTTCTGCCTTCTCTCGCGGTTCCGATGAGAGCAACCAATCTTTCCAATTTCCAGTGTTGGCAAGTCATCATGATCACCATGACCATGTAATGCTTCCATTAGAGCAAGTAAAAGAGAAGAAGCAGGAGATGCGGGCGCCTGAGAAGCAGCAGTATCAGACAGGGGAGAGAAGCCCTGAAAGAAATGCACAATCAAAGGCTACAGAATGCAGCAGTTGGTTGTTTTGCTTTTGTTGCTGCTGGATCTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.96

Weight (kDa)

4.76

Isoelectric Point (pI)

75.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 760
AccII CGCG 1 cut(s) 642
AciI CCGC 4 cut(s) 277, 324, 642, 757
AclWI GGATC 2 cut(s) 287, 875
AcsI RAATTY 2 cut(s) 258, 535
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 761
AgsI TTSAA 4 cut(s) 53, 363, 423, 443
AluBI AGCT 6 cut(s) 87, 182, 314, 359, 402, 439
AluI AGCT 6 cut(s) 87, 182, 314, 359, 402, 439
Alw26I GTCTC 3 cut(s) 177, 449, 584
AlwI GGATC 2 cut(s) 287, 875
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 7 cut(s) 72, 87, 399, 601, 772, 834, 861
ApoI RAATTY 2 cut(s) 258, 535
AspLEI GCGC 2 cut(s) 220, 763
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 216, 692
AvaII GGWCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 760
BbvI GCAGC 7 cut(s) 59, 74, 411, 588, 784, 846, 848
BccI CCATC 2 cut(s) 229, 442
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 3 cut(s) 177, 449, 584
BfaI CTAG 2 cut(s) 78, 300
BfmI CTRYAG 2 cut(s) 609, 825
BfoI RGCGCY 1 cut(s) 764
BfuI GTATCC 1 cut(s) 484
BisI GCNGC 9 cut(s) 73, 88, 278, 324, 400, 602, 773, 835, 862
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 9 cut(s) 74, 89, 279, 325, 401, 603, 774, 836, 863
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 3 cut(s) 213, 646, 762
BmrFI CCNGG 1 cut(s) 559
BmrI ACTGGG 1 cut(s) 440
BmsI GCATC 2 cut(s) 43, 744
BmuI ACTGGG 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 327
BpuMI CCSGG 1 cut(s) 559
BsaHI GRCGYC 1 cut(s) 761
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bse118I RCCGGY 1 cut(s) 873
Bse1I ACTGG 4 cut(s) 415, 435, 465, 677
BseMII CTCAG 2 cut(s) 192, 756
BseNI ACTGG 4 cut(s) 415, 435, 465, 677
BseXI GCAGC 7 cut(s) 59, 74, 411, 588, 784, 846, 848
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 760
BsiSI CCGG 4 cut(s) 191, 209, 558, 874
BsmAI GTCTC 3 cut(s) 177, 449, 584
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 6 cut(s) 58, 243, 292, 469, 697, 867
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 4 cut(s) 277, 324, 642, 757
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 193, 757
BspFNI CGCG 1 cut(s) 642
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 213, 646, 762
BspPI GGATC 2 cut(s) 287, 875
BspT107I GGYRCC 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 873
BsrI ACTGG 4 cut(s) 415, 435, 465, 677
BssAI RCCGGY 1 cut(s) 873
BssMI GATC 6 cut(s) 58, 243, 292, 469, 697, 867
BssNI GRCGYC 1 cut(s) 761
Bst4CI ACNGT 2 cut(s) 250, 479
Bst6I CTCTTC 3 cut(s) 438, 525, 582
BstACI GRCGYC 1 cut(s) 761
BstAPI GCANNNNNTGC 1 cut(s) 754
BstC8I GCNNGC 3 cut(s) 271, 275, 759
BstDEI CTNAG 3 cut(s) 201, 327, 765
BstFNI CGCG 1 cut(s) 642
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 2 cut(s) 220, 763
BstKTI GATC 6 cut(s) 61, 246, 295, 472, 700, 870
BstMAI GTCTC 3 cut(s) 177, 449, 584
BstMBI GATC 6 cut(s) 58, 243, 292, 469, 697, 867
BstMWI GCNNNNNNNGC 6 cut(s) 69, 320, 754, 769, 858, 870
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 2 cut(s) 609, 825
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 7 cut(s) 59, 74, 411, 588, 784, 846, 848
BstX2I RGATCY 1 cut(s) 867
BstYI RGATCY 1 cut(s) 867
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 1 cut(s) 280
BtsIMutI CAGTG 5 cut(s) 246, 458, 484, 490, 684
Cac8I GCNNGC 3 cut(s) 271, 275, 759
CciI TCATGA 1 cut(s) 694
CfoI GCGC 2 cut(s) 220, 763
Cfr10I RCCGGY 1 cut(s) 873
Cfr13I GGNCC 1 cut(s) 193
CviAII CATG 5 cut(s) 64, 386, 695, 704, 710
DdeI CTNAG 3 cut(s) 201, 327, 765
DinI GGCGCC 1 cut(s) 762
DpnI GATC 6 cut(s) 60, 245, 294, 471, 699, 869
DpnII GATC 6 cut(s) 58, 243, 292, 469, 697, 867
Eam1104I CTCTTC 3 cut(s) 438, 525, 582
EarI CTCTTC 3 cut(s) 438, 525, 582
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 762
EheI GGCGCC 1 cut(s) 762
FaeI CATG 5 cut(s) 67, 389, 698, 707, 713
FatI CATG 5 cut(s) 63, 385, 694, 703, 709
FauI CCCGC 1 cut(s) 750
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 9 cut(s) 73, 88, 278, 324, 400, 602, 773, 835, 862
Fsp4HI GCNGC 9 cut(s) 73, 88, 278, 324, 400, 602, 773, 835, 862
FspBI CTAG 2 cut(s) 78, 300
GlaI GCGC 2 cut(s) 219, 762
GluI GCNGC 9 cut(s) 73, 88, 278, 324, 400, 602, 773, 835, 862
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 1 cut(s) 280
HapII CCGG 4 cut(s) 191, 209, 558, 874
HhaI GCGC 2 cut(s) 220, 763
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 5 cut(s) 67, 389, 698, 707, 713
Hin6I GCGC 2 cut(s) 218, 761
HinP1I GCGC 2 cut(s) 218, 761
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 2 cut(s) 67, 368
HpaII CCGG 4 cut(s) 191, 209, 558, 874
HphI GGTGA 2 cut(s) 216, 692
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 3 cut(s) 526, 649, 783
Hpy188III TCNNGA 3 cut(s) 176, 285, 695
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 291, 342, 643
HpyCH4III ACNGT 2 cut(s) 250, 479
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 11, 812, 834
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 320, 754, 769, 858, 870
HpyF3I CTNAG 3 cut(s) 201, 327, 765
HpySE526I ACGT 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 5 cut(s) 67, 389, 698, 707, 713
HspAI GCGC 2 cut(s) 218, 761
KasI GGCGCC 1 cut(s) 760
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 6 cut(s) 58, 243, 292, 469, 697, 867
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 7 cut(s) 59, 74, 411, 588, 784, 846, 848
LweI GCATC 2 cut(s) 43, 744
MaeI CTAG 2 cut(s) 78, 300
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 4 cut(s) 26, 473, 515, 553
MalI GATC 6 cut(s) 60, 245, 294, 471, 699, 869
MboI GATC 6 cut(s) 58, 243, 292, 469, 697, 867
MboII GAAGA 7 cut(s) 90, 93, 146, 455, 542, 599, 754
MflI RGATCY 1 cut(s) 867
MluCI AATT 5 cut(s) 46, 258, 535, 594, 671
Mly113I GGCGCC 1 cut(s) 761
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 216, 223, 264, 520, 571, 607
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 3 cut(s) 45, 83, 546
MslI CAYNNNNRTG 1 cut(s) 708
MspI CCGG 4 cut(s) 191, 209, 558, 874
MspR9I CCNGG 1 cut(s) 559
Mva1269I GAATGC 1 cut(s) 836
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 69, 320, 754, 769, 858, 870
NarI GGCGCC 1 cut(s) 761
NciI CCSGG 1 cut(s) 559
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 58, 243, 292, 469, 697, 867
NlaIII CATG 5 cut(s) 67, 389, 698, 707, 713
NlaIV GGNNCC 3 cut(s) 213, 646, 762
NmuCI GTSAC 3 cut(s) 473, 515, 553
NsiI ATGCAT 1 cut(s) 13
PagI TCATGA 1 cut(s) 694
PctI GAATGC 1 cut(s) 836
PfeI GAWTC 2 cut(s) 67, 368
PkrI GCNGC 9 cut(s) 74, 89, 279, 325, 401, 603, 774, 836, 863
PluTI GGCGCC 1 cut(s) 764
PspN4I GGNNCC 3 cut(s) 213, 646, 762
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 867
RseI CAYNNNNRTG 1 cut(s) 708
SaqAI TTAA 3 cut(s) 45, 83, 546
SatI GCNGC 9 cut(s) 73, 88, 278, 324, 400, 602, 773, 835, 862
Sau3AI GATC 6 cut(s) 58, 243, 292, 469, 697, 867
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 559
SfaNI GCATC 2 cut(s) 43, 744
SfcI CTRYAG 2 cut(s) 609, 825
SfoI GGCGCC 1 cut(s) 762
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 708
Sse9I AATT 5 cut(s) 46, 258, 535, 594, 671
SsiI CCGC 4 cut(s) 277, 324, 642, 757
SspDI GGCGCC 1 cut(s) 760
SspMI CTAG 2 cut(s) 78, 300
StyD4I CCNGG 1 cut(s) 557
TaaI ACNGT 2 cut(s) 250, 479
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 504
TasI AATT 5 cut(s) 46, 258, 535, 594, 671
TauI GCSGC 2 cut(s) 280, 326
TfiI GAWTC 2 cut(s) 67, 368
Tru1I TTAA 3 cut(s) 45, 83, 546
Tru9I TTAA 3 cut(s) 45, 83, 546
TscAI CASTG 5 cut(s) 253, 465, 484, 490, 684
TseFI GTSAC 3 cut(s) 473, 515, 553
TseI GCWGC 7 cut(s) 72, 87, 399, 601, 772, 834, 861
Tsp45I GTSAC 3 cut(s) 473, 515, 553
TspDTI ATGAA 7 cut(s) 80, 105, 114, 324, 374, 381, 441
TspRI CASTG 5 cut(s) 253, 465, 484, 490, 684
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 2 cut(s) 258, 535
XspI CTAG 2 cut(s) 78, 300
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.