Prupe.3G254700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013173
Physical Location & Seq
Reverse (-)
24360243 .. 24363103
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G254700.1

Sequence Viewer

Length: 1065 bp
ATGGATGATGTGCAGAAGAATGATGATAGTAAGCATCTAAAGGTGCACTTCGAATCTGATATGGTTAATTACCGCCGAAATTCAAGCTTCCCATCATCTTCTTCATCATCATCATCTTCAACTTCATCATCACCACGTTCATCACTGGAATCAGATGTTACTGACAAAGCAGATGTCAATGGCTCTTTTGAAACTACACAACAGGGCCAGGAGTCTCAGGGGCCTCCGCCATTACCAGAGGCTTCTTCTTCTCAGACTCTTGCTTGGAGCCTGCAAAGTGGATCATCAGGACAATCCTCTCAACTTCAGACGATGGGGCGGCCTGCAGGATATGATCCAAGTCGAATCCCAACGTCTATTTTTGCCAGTAAACCTTCAACAGGCATGGATTGGAGTGTTGCTTCAAATGAATCATTGTTTAGCCTTCATGTGGGGAACAACAGTTTCTCAAGAGAGCAATTTTCTATGCTGTATAAATCTGGAGAACTGACCTACCCTGATGAGTTGTTTTACATTCCAACTCCACTTCCCACAGTTACCGAAGCAGAAACTGTTGAAATGAAGATTCACAATGTGGAGAAAGAGACTGTTGAAAATAAAGATCCAAACGTGGAGAAGAAGAGTGTTGAAAATATGAGTGCAAATGTGGATAAAGAGAAGGTTGAAAGCACGAGTGTAAAGGTGGAAATGGACTCGGTAGAAACAGAAGAAGCTGCAGATGAATCTGAAAAGACAGATTTAACTGATATTCCCAGTGATCATGGTGGAAATAAGGCGCCTCTTATTGTGGAAATCAGGGGTTCTGCTACCTCTTACCGTTCTGATGACAGCAATCACAGCACCAAGTCATTCCAATTTCCACTGTTGGCAGGTCATGAGGCTGGAAGACATAGCCCTGCACAGATGACCTCAGTAAAGCAGCAGCCAGAGCAGCACACACAGCAGGAGATGCATAAGCAGGAGGACGAGCTTGAAACGCCTGATACACCTGAAACACCCCTAAAGGCTACAGCTCCATCATCCAGTTGGTTTTCTTGTTTTTATTGTTGCATGGTCTGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.91

Weight (kDa)

4.72

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 860
AccB1I GGYRCC 1 cut(s) 775
AciI CCGC 3 cut(s) 73, 227, 319
AclWI GGATC 3 cut(s) 289, 329, 596
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 776
AdeI CACNNNGTG 1 cut(s) 574
AfiI CCNNNNNNNGG 2 cut(s) 380, 430
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 4 cut(s) 87, 713, 970, 1013
AluI AGCT 4 cut(s) 87, 713, 970, 1013
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 219, 578
Alw44I GTGCAC 1 cut(s) 44
AlwI GGATC 3 cut(s) 289, 329, 596
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 3 cut(s) 205, 221, 320
ApaLI GTGCAC 1 cut(s) 44
ApeKI GCWGC 4 cut(s) 713, 919, 922, 931
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 2 cut(s) 205, 221
AsuHPI GGTGA 1 cut(s) 123
AsuII TTCGAA 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 48
BanI GGYRCC 1 cut(s) 775
BauI CACGAG 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 892
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 4 cut(s) 700, 931, 934, 943
BccI CCATC 3 cut(s) 100, 307, 1024
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 757
BcoDI GTCTC 2 cut(s) 219, 578
BfmI CTRYAG 3 cut(s) 324, 714, 1008
BfoI RGCGCY 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 860
BisI GCNGC 5 cut(s) 320, 714, 920, 923, 932
BlsI GCNGC 5 cut(s) 321, 715, 921, 924, 933
Bme1390I CCNGG 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 205, 221
BmiI GGNNCC 3 cut(s) 222, 269, 777
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 43, 939
BmuI ACTGGG 1 cut(s) 747
BpiI GAAGAC 1 cut(s) 892
BpmI CTGGAG 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 776
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 430
Bse1I ACTGG 4 cut(s) 150, 366, 753, 1023
BseBI CCWGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 10, 1019
BseLI CCNNNNNNNGG 2 cut(s) 380, 430
BseMII CTCAG 3 cut(s) 230, 266, 924
BseNI ACTGG 4 cut(s) 150, 366, 753, 1023
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 4 cut(s) 700, 931, 934, 943
BsgI GTGCAG 2 cut(s) 32, 882
BshFI GGCC 3 cut(s) 207, 223, 322
BshNI GGYRCC 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 380, 430
BsmAI GTCTC 2 cut(s) 219, 578
BsnI GGCC 3 cut(s) 207, 223, 322
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 281, 334, 601, 757
BspACI CCGC 3 cut(s) 73, 227, 319
BspANI GGCC 3 cut(s) 207, 223, 322
BspCNI CTCAG 3 cut(s) 229, 265, 923
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 222, 269, 777
BspMAI CTGCAG 2 cut(s) 328, 718
BspMI ACCTGC 1 cut(s) 860
BspPI GGATC 3 cut(s) 289, 329, 596
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 775
BsrI ACTGG 4 cut(s) 150, 366, 753, 1023
BssMI GATC 4 cut(s) 281, 334, 601, 757
BssNI GRCGYC 1 cut(s) 776
BssSI CACGAG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 6 cut(s) 443, 535, 553, 589, 818, 864
Bst6I CTCTTC 1 cut(s) 614
BstACI GRCGYC 1 cut(s) 776
BstAPI GCANNNNNTGC 1 cut(s) 949
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 272, 324
BstDEI CTNAG 3 cut(s) 216, 252, 910
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 10, 1019
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 4 cut(s) 284, 337, 604, 760
BstMAI GTCTC 2 cut(s) 219, 578
BstMBI GATC 4 cut(s) 281, 334, 601, 757
BstMWI GCNNNNNNNGC 6 cut(s) 837, 928, 931, 940, 949, 976
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 3 cut(s) 324, 714, 1008
BstSLI GKGCMC 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 700, 931, 934, 943
BstV2I GAAGAC 1 cut(s) 892
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 3 cut(s) 207, 223, 322
BtsCI GGATG 2 cut(s) 10, 1019
BtsIMutI CAGTG 3 cut(s) 143, 760, 860
BveI ACCTGC 1 cut(s) 860
Cac8I GCNNGC 2 cut(s) 272, 324
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 2 cut(s) 205, 221
CviAII CATG 5 cut(s) 385, 428, 761, 875, 1051
DdeI CTNAG 3 cut(s) 216, 252, 910
DinI GGCGCC 1 cut(s) 777
DpnI GATC 4 cut(s) 283, 336, 603, 759
DpnII GATC 4 cut(s) 281, 334, 601, 757
DraIII CACNNNGTG 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
EciI GGCGGA 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 954
EgeI GGCGCC 1 cut(s) 777
EheI GGCGCC 1 cut(s) 777
FaeI CATG 5 cut(s) 388, 431, 764, 878, 1054
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 5 cut(s) 384, 427, 760, 874, 1050
FbaI TGATCA 1 cut(s) 757
Fnu4HI GCNGC 5 cut(s) 320, 714, 920, 923, 932
FokI GGATG 2 cut(s) 17, 1006
Fsp4HI GCNGC 5 cut(s) 320, 714, 920, 923, 932
GlaI GCGC 1 cut(s) 777
GluI GCNGC 5 cut(s) 320, 714, 920, 923, 932
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 3 cut(s) 207, 223, 322
HhaI GCGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 776
Hin1II CATG 5 cut(s) 388, 431, 764, 878, 1054
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 9 cut(s) 53, 149, 212, 256, 345, 410, 565, 692, 722
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 46, 371
Hpy188I TCNGA 6 cut(s) 58, 154, 255, 309, 727, 823
Hpy188III TCNNGA 4 cut(s) 288, 450, 480, 875
Hpy8I GTNNAC 2 cut(s) 46, 371
HpyAV CCTTC 3 cut(s) 384, 434, 652
HpyCH4III ACNGT 6 cut(s) 443, 535, 553, 589, 818, 864
HpyCH4IV ACGT 3 cut(s) 136, 353, 609
HpyCH4V TGCA 9 cut(s) 13, 46, 274, 326, 641, 716, 899, 952, 1050
HpyF10VI GCNNNNNNNGC 6 cut(s) 837, 928, 931, 940, 949, 976
HpyF3I CTNAG 3 cut(s) 216, 252, 910
HpySE526I ACGT 3 cut(s) 136, 353, 609
Hsp92I GRCGYC 1 cut(s) 776
Hsp92II CATG 5 cut(s) 388, 431, 764, 878, 1054
HspAI GCGC 1 cut(s) 776
KasI GGCGCC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 4 cut(s) 281, 334, 601, 757
LmnI GCTCC 2 cut(s) 267, 1018
Lsp1109I GCAGC 4 cut(s) 700, 931, 934, 943
LweI GCATC 2 cut(s) 43, 939
MaeII ACGT 3 cut(s) 136, 353, 609
MaeIII GTNAC 2 cut(s) 157, 535
MalI GATC 4 cut(s) 283, 336, 603, 759
MboI GATC 4 cut(s) 281, 334, 601, 757
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 4 cut(s) 67, 79, 458, 854
Mly113I GGCGCC 1 cut(s) 776
MlyI GAGTC 3 cut(s) 221, 250, 686
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 8 cut(s) 232, 234, 307, 789, 820, 871, 919, 955
Mph1103I ATGCAT 1 cut(s) 954
MseI TTAA 2 cut(s) 66, 740
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 6 cut(s) 837, 928, 931, 940, 949, 976
NarI GGCGCC 1 cut(s) 776
NdeII GATC 4 cut(s) 281, 334, 601, 757
NlaIII CATG 5 cut(s) 388, 431, 764, 878, 1054
NlaIV GGNNCC 3 cut(s) 222, 269, 777
NsiI ATGCAT 1 cut(s) 954
NspV TTCGAA 1 cut(s) 51
PagI TCATGA 1 cut(s) 874
PfeI GAWTC 6 cut(s) 53, 149, 345, 410, 565, 722
PkrI GCNGC 5 cut(s) 321, 715, 921, 924, 933
PleI GAGTC 3 cut(s) 220, 250, 686
PluTI GGCGCC 1 cut(s) 779
PpsI GAGTC 3 cut(s) 220, 250, 686
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 222, 269, 777
PspPI GGNCC 2 cut(s) 205, 221
PstI CTGCAG 2 cut(s) 328, 718
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 601
SaqAI TTAA 2 cut(s) 66, 740
SatI GCNGC 5 cut(s) 320, 714, 920, 923, 932
Sau3AI GATC 4 cut(s) 281, 334, 601, 757
Sau96I GGNCC 2 cut(s) 205, 221
SbfI CCTGCAGG 1 cut(s) 328
SchI GAGTC 3 cut(s) 221, 250, 686
ScrFI CCNGG 1 cut(s) 209
SdaI CCTGCAGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 2 cut(s) 43, 939
SfcI CTRYAG 3 cut(s) 324, 714, 1008
SfoI GGCGCC 1 cut(s) 777
SfuI TTCGAA 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse8387I CCTGCAGG 1 cut(s) 328
Sse9I AATT 4 cut(s) 67, 79, 458, 854
SsiI CCGC 3 cut(s) 73, 227, 319
SspDI GGCGCC 1 cut(s) 775
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 6 cut(s) 443, 535, 553, 589, 818, 864
TaiI ACGT 3 cut(s) 139, 356, 612
TaqI TCGA 2 cut(s) 51, 343
TasI AATT 4 cut(s) 67, 79, 458, 854
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 6 cut(s) 53, 149, 345, 410, 565, 722
Tru1I TTAA 2 cut(s) 66, 740
Tru9I TTAA 2 cut(s) 66, 740
TscAI CASTG 3 cut(s) 150, 760, 867
TseI GCWGC 4 cut(s) 713, 919, 922, 931
TspDTI ATGAA 7 cut(s) 93, 114, 129, 416, 423, 575, 735
TspRI CASTG 3 cut(s) 150, 760, 867
VneI GTGCAC 1 cut(s) 44
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 1023
Zsp2I ATGCAT 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.