Rh2AG583800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013173
Physical Location & Seq
Reverse (-)
81698647 .. 81700198
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG583800.1

Sequence Viewer

Length: 990 bp
ATGGCTTATGCATATAGCGATGAAAGTAATAAGCACCTAAAGGTTCATTTCGCATCTGAACCCATAAATCGCTGCCCGAGTTCAAGCTGCTACACATCTTCTTCTTGTTCCTCCTCATCATCTTCATCACTAGACGAACCATATGATATTGACAAAGTTGAGGTTGATCCGTCTCCCGAAGCTAAACAACCGGACCTAAATGAGCCTCCGGCGCCTGTCCCATCACCAGAGGTTACTTCACAGACTACTGTTTGGAGCATTGGGTCATCATCTTCACAATCTCCTCCTCAAATTCCAATGGCGGGCGGGCGGCCTTCCGGATATGATCCAAATCGACTCCCATCAGCTATGTTTGCTGCTAAGCCTTCATCTGCTATGGATTGGAGTGTTGCTTCAAATGAATCATTGTTTAGTATTCATGTGGGGAATAATAGCTTCTCAAGAGACCAATATTTCGTCATGTTCAACAAATCTGGAGAACTGGGGAAGCTTGATGAGATGTTCCACAATGTTCCAACTCCGCTTTCCCCAGTTACCGAGACTGTGGAAACTAAGCCGAGTTCCAATGCGTTAGTAGAGACGCTTGAAACTGATCATCACAGTGTGGAGACGGAGAGTGTCGAAACTAAGAGTGAAATTTCGGAGGAAGAGAATGTTGTGATGGTGACCGGGAAGGTAGAGAAAGACAAAAAAAACAAAGAGACAATTAGATTGCCTACTATGGAGGAAACCAAGGGTTCTGCCTTCTCTCACCGTTCGAATGAGAGCAATCATAGTAATCAATCTTTCCAATTTCCAGTGTTGGCAGGTCATCATGATCACCATGACCATGTAAAGCACCCGTTAGAGCAAGTGAAAGAGGAGATGCCGGCGCGTAAGAATGAGCAGGATCAGCCACAGCCCGAAAGCCCTGAAAGAAATGCACCATTAAAGGCTACACGAAGCAGCAGTTGGTTGTCTTGCTTTTCTTGCTGCTGGATCTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

36.37

Weight (kDa)

5.19

Isoelectric Point (pI)

72.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 1 cut(s) 874
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 4 cut(s) 302, 306, 310, 521
AclWI GGATC 4 cut(s) 161, 320, 897, 986
AcsI RAATTY 2 cut(s) 291, 636
AcyI GRCGYC 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 604
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 84, 396, 466, 587
AjuI GAANNNNNNNTTGG 4 cut(s) 508, 540, 934, 966
AluBI AGCT 5 cut(s) 87, 182, 347, 435, 490
AluI AGCT 5 cut(s) 87, 182, 347, 435, 490
Alw26I GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
AlwI GGATC 4 cut(s) 161, 320, 897, 986
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 5 cut(s) 72, 87, 356, 945, 972
ApoI RAATTY 2 cut(s) 291, 636
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AspLEI GCGC 2 cut(s) 214, 874
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 4 cut(s) 216, 676, 743, 812
AsuII TTCGAA 1 cut(s) 758
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 211
BbvI GCAGC 5 cut(s) 59, 74, 343, 957, 959
BccI CCATC 3 cut(s) 229, 349, 655
BclI TGATCA 2 cut(s) 592, 817
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 797
BisI GCNGC 6 cut(s) 73, 88, 311, 357, 946, 973
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 6 cut(s) 74, 89, 312, 358, 947, 974
Bme1390I CCNGG 1 cut(s) 670
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 670
BmrI ACTGGG 2 cut(s) 491, 524
BmsI GCATC 2 cut(s) 62, 855
BmuI ACTGGG 2 cut(s) 491, 524
BpmI CTGGAG 1 cut(s) 495
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 2 cut(s) 190, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 2 cut(s) 868, 984
Bse1I ACTGG 3 cut(s) 486, 530, 797
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 732
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 302
BseNI ACTGG 3 cut(s) 486, 530, 797
BseRI GAGGAG 4 cut(s) 103, 273, 276, 875
BseXI GCAGC 5 cut(s) 59, 74, 343, 957, 959
Bsh1236I CGCG 1 cut(s) 874
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 191, 209, 318, 669, 869, 985
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
BsmBI CGTCTC 3 cut(s) 177, 572, 602
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 758
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 6 cut(s) 166, 325, 592, 817, 889, 978
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 302, 306, 310, 521
BspANI GGCC 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 317
BspFNI CGCG 1 cut(s) 874
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 4 cut(s) 161, 320, 897, 986
BspT104I TTCGAA 1 cut(s) 758
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 438
BsrFI RCCGGY 2 cut(s) 868, 984
BsrI ACTGG 3 cut(s) 486, 530, 797
BssAI RCCGGY 2 cut(s) 868, 984
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 6 cut(s) 166, 325, 592, 817, 889, 978
BssNI GRCGYC 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 732
Bst4CI ACNGT 4 cut(s) 250, 544, 602, 755
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 304, 308, 870
BstDEI CTNAG 3 cut(s) 360, 552, 627
BstEII GGTNACC 1 cut(s) 664
BstFNI CGCG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 874
BstKTI GATC 6 cut(s) 169, 328, 595, 820, 892, 981
BstMAI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
BstMBI GATC 6 cut(s) 166, 325, 592, 817, 889, 978
BstMWI GCNNNNNNNGC 5 cut(s) 211, 353, 892, 969, 981
BstPI GGTNACC 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 668
BstUI CGCG 1 cut(s) 874
BstV1I GCAGC 5 cut(s) 59, 74, 343, 957, 959
BstX2I RGATCY 1 cut(s) 978
BstYI RGATCY 1 cut(s) 978
BsuRI GGCC 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 607, 804
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 3 cut(s) 304, 308, 870
CciI TCATGA 1 cut(s) 814
CfoI GCGC 2 cut(s) 214, 874
Cfr10I RCCGGY 2 cut(s) 868, 984
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 589
CviAII CATG 5 cut(s) 419, 460, 815, 824, 830
DdeI CTNAG 3 cut(s) 360, 552, 627
DinI GGCGCC 1 cut(s) 213
DpnI GATC 6 cut(s) 168, 327, 594, 819, 891, 980
DpnII GATC 6 cut(s) 166, 325, 592, 817, 889, 978
DraIII CACNNNGTG 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 732
Esp3I CGTCTC 3 cut(s) 177, 572, 602
FaeI CATG 5 cut(s) 422, 463, 818, 827, 833
FaqI GGGAC 1 cut(s) 203
FatI CATG 5 cut(s) 418, 459, 814, 823, 829
FauI CCCGC 2 cut(s) 295, 299
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 592, 817
Fnu4HI GCNGC 6 cut(s) 73, 88, 311, 357, 946, 973
Fsp4HI GCNGC 6 cut(s) 73, 88, 311, 357, 946, 973
FspBI CTAG 1 cut(s) 131
GlaI GCGC 2 cut(s) 213, 873
GluI GCNGC 6 cut(s) 73, 88, 311, 357, 946, 973
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 1 cut(s) 313
HapII CCGG 6 cut(s) 191, 209, 318, 669, 869, 985
HgaI GACGC 1 cut(s) 589
HhaI GCGC 2 cut(s) 214, 874
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 5 cut(s) 422, 463, 818, 827, 833
Hin6I GCGC 2 cut(s) 212, 872
HinP1I GCGC 2 cut(s) 212, 872
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 336, 401
HpaII CCGG 6 cut(s) 191, 209, 318, 669, 869, 985
HphI GGTGA 4 cut(s) 216, 676, 743, 812
Hpy188I TCNGA 2 cut(s) 58, 643
Hpy188III TCNNGA 5 cut(s) 176, 318, 441, 474, 815
HpyAV CCTTC 4 cut(s) 324, 375, 667, 754
HpyCH4III ACNGT 4 cut(s) 250, 544, 602, 755
HpyCH4V TGCA 2 cut(s) 11, 923
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 353, 892, 969, 981
HpyF3I CTNAG 3 cut(s) 360, 552, 627
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 5 cut(s) 422, 463, 818, 827, 833
HspAI GCGC 2 cut(s) 212, 872
KasI GGCGCC 1 cut(s) 211
Kpn2I TCCGGA 1 cut(s) 317
KroI GCCGGC 1 cut(s) 868
KroNI GCCGGC 1 cut(s) 870
Ksp22I TGATCA 2 cut(s) 592, 817
Kzo9I GATC 6 cut(s) 166, 325, 592, 817, 889, 978
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 5 cut(s) 59, 74, 343, 957, 959
LweI GCATC 2 cut(s) 62, 855
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 3 cut(s) 232, 532, 664
MalI GATC 6 cut(s) 168, 327, 594, 819, 891, 980
MboI GATC 6 cut(s) 166, 325, 592, 817, 889, 978
MboII GAAGA 5 cut(s) 90, 93, 114, 264, 659
MflI RGATCY 1 cut(s) 978
MluCI AATT 4 cut(s) 291, 636, 705, 791
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 868
MseI TTAA 1 cut(s) 929
MslI CAYNNNNRTG 2 cut(s) 600, 828
MspI CCGG 6 cut(s) 191, 209, 318, 669, 869, 985
MspR9I CCNGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 874
MwoI GCNNNNNNNGC 5 cut(s) 211, 353, 892, 969, 981
NaeI GCCGGC 1 cut(s) 870
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 166, 325, 592, 817, 889, 978
NgoMIV GCCGGC 1 cut(s) 868
NlaIII CATG 5 cut(s) 422, 463, 818, 827, 833
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 664
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 758
PagI TCATGA 1 cut(s) 814
PdiI GCCGGC 1 cut(s) 870
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 6 cut(s) 74, 89, 312, 358, 947, 974
PleI GAGTC 1 cut(s) 330
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 978
RseI CAYNNNNRTG 2 cut(s) 600, 828
SaqAI TTAA 1 cut(s) 929
SatI GCNGC 6 cut(s) 73, 88, 311, 357, 946, 973
Sau3AI GATC 6 cut(s) 166, 325, 592, 817, 889, 978
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 670
SfaNI GCATC 2 cut(s) 62, 855
SfoI GGCGCC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 758
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 600, 828
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 4 cut(s) 291, 636, 705, 791
SsiI CCGC 4 cut(s) 302, 306, 310, 521
SspDI GGCGCC 1 cut(s) 211
SspI AATATT 1 cut(s) 452
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 668
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 4 cut(s) 250, 544, 602, 755
TaqI TCGA 3 cut(s) 334, 621, 758
TasI AATT 4 cut(s) 291, 636, 705, 791
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 929
Tru9I TTAA 1 cut(s) 929
TscAI CASTG 2 cut(s) 607, 804
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 5 cut(s) 72, 87, 356, 945, 972
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 6 cut(s) 35, 36, 114, 357, 407, 414
TspGWI ACGGA 2 cut(s) 159, 626
TspRI CASTG 2 cut(s) 607, 804
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 2 cut(s) 291, 636
XspI CTAG 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.