pycom17g05960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013173
Physical Location & Seq
Forward (+)
4193725 .. 4195009
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05960.2

Sequence Viewer

Length: 1065 bp
ATGGATGATGCATATAGGGGCGCAAGTGGTAGTAAGCATCCAAGGGTGCATTTTGAAAGCGATGTGGTTAATCACCGCCGCAATTCAACCTTCCCATCATCCTCGTCATCATCACCATCGTCCTCATCATCGTCATCTCCACGTTCATCGCTGGAATCATCTGTCAATGATAAAGAAGATGGTAAGAACCCCTGCGTAACAACAACACGACCAGGCCACGAGTCTCAGGGGGCCCTGTCATTACCAGAGGGTTATTCTTCTCCGATTCTTCCTTGGAGCATGCAAAGCGGATCATCCGTGCAATCCTCTCAGTTTCAGATGATGCAAAGGCCTGCAGGATATGACCCGAGTCGAATCCCATCGAATATTTTTTCCAGTAAACCGGCAGCAGGCATGGATTGGAGTGTTGCTTCAAATGAATCATTATTTAGTCTTCATGTGGGGAACAACAGCTTCTCGAGAGATCAATTTACTTTTCTGAATAAATCCGGAGAGCTTTACAAATCCGGAGAGCTTTATAAATCCGGTGAACTGACAAGGCATGATGAATTATTCTACATTCCAACTCCACTTCCCACAGTTACTGAGGCAGAAACTATTGAAATTAAGATTCACAATGTGGAGAAAGAGAAGGTTGAAAACAAGGCTCCGAACGTGGAGGCAAAAATCGAGGAAAATGAGAGTGCAAATGTGGAGATGTATAAGGTTGAAAGCGTGAGGGGAAATGTCGAAAATGAATCATTAGAAGAAACAGAAGGACCAGATGAATCTGCAAAGACAGAAGCCATAAAACCTAAGGAAATCCGGAATTCTGCTACTTCATACCGGTCTGATGGGAGCAATAACAGCACCAAGTCATTCCAGTTCCCAGTGTTGGCAGGTCATGAGGTTGAAAAAAATATCCCTGCAGAGATGGACTCAGAAAAGCTAGAGTCAGAACCACACGTACAGCAGGAGATGCATAAACAAGTAGAGCCCGAAGCCCCCGAAACACCCCTAAACGCCGCCACAACTCAAACAACCAGTTGGTTTTCGTGCTTCTGTTGCTGCACCCCCTGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.02

Weight (kDa)

5.05

Isoelectric Point (pI)

62.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
Acc36I ACCTGC 1 cut(s) 869
AccIII TCCGGA 3 cut(s) 488, 506, 804
AciI CCGC 4 cut(s) 76, 79, 288, 1005
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 808
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 1 cut(s) 948
AfiI CCNNNNNNNGG 2 cut(s) 389, 874
AflIII ACRYGT 1 cut(s) 943
AgeI ACCGGT 1 cut(s) 825
AgsI TTSAA 7 cut(s) 56, 87, 414, 602, 638, 710, 893
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 453, 496, 514, 928
AluI AGCT 4 cut(s) 453, 496, 514, 928
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 2 cut(s) 346, 457
Aor13HI TCCGGA 3 cut(s) 488, 506, 804
AoxI GGCC 3 cut(s) 214, 231, 329
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 386, 1047
ApoI RAATTY 1 cut(s) 808
AsiGI ACCGGT 1 cut(s) 825
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 3 cut(s) 231, 232, 758
AsuHPI GGTGA 3 cut(s) 65, 105, 539
AvaI CYCGRG 2 cut(s) 346, 457
AvaII GGWCC 1 cut(s) 758
AxyI CCTNAGG 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 235, 978
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 398, 1034
BccI CCATC 6 cut(s) 103, 124, 173, 367, 827, 907
BceAI ACGGC 1 cut(s) 1044
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 929
BfmI CTRYAG 2 cut(s) 333, 906
BfuAI ACCTGC 1 cut(s) 869
BisI GCNGC 4 cut(s) 79, 387, 1005, 1048
BlsI GCNGC 4 cut(s) 80, 388, 1006, 1049
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 2 cut(s) 346, 457
BmgT120I GGNCC 3 cut(s) 231, 232, 758
BmiI GGNNCC 3 cut(s) 232, 233, 648
BmrFI CCNGG 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 863
BmsI GCATC 3 cut(s) 46, 312, 948
BmuI ACTGGG 1 cut(s) 863
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BsaAI YACGTR 1 cut(s) 946
BsaJI CCNNGG 2 cut(s) 41, 272
BsaWI WCCGGW 5 cut(s) 488, 506, 524, 804, 825
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 874
Bse118I RCCGGY 2 cut(s) 382, 825
Bse1I ACTGG 4 cut(s) 375, 862, 869, 1023
Bse21I CCTNAGG 1 cut(s) 795
BseAI TCCGGA 3 cut(s) 488, 506, 804
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 41, 272
BseGI GGATG 4 cut(s) 10, 37, 98, 293
BseLI CCNNNNNNNGG 2 cut(s) 389, 874
BseMII CTCAG 4 cut(s) 239, 323, 576, 933
BseNI ACTGG 4 cut(s) 375, 862, 869, 1023
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 398, 1034
BsgI GTGCAG 1 cut(s) 1033
BshFI GGCC 3 cut(s) 216, 233, 331
BshTI ACCGGT 1 cut(s) 825
BsiHKCI CYCGRG 2 cut(s) 346, 457
BsiSI CCGG 6 cut(s) 383, 489, 507, 525, 805, 826
BslI CCNNNNNNNGG 2 cut(s) 389, 874
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 3 cut(s) 216, 233, 331
BsoBI CYCGRG 2 cut(s) 346, 457
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 235, 978
Bsp13I TCCGGA 3 cut(s) 488, 506, 804
Bsp143I GATC 2 cut(s) 290, 463
BspACI CCGC 4 cut(s) 76, 79, 288, 1005
BspANI GGCC 3 cut(s) 216, 233, 331
BspCNI CTCAG 4 cut(s) 238, 322, 577, 932
BspEI TCCGGA 3 cut(s) 488, 506, 804
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 3 cut(s) 232, 233, 648
BspMAI CTGCAG 2 cut(s) 337, 910
BspMI ACCTGC 1 cut(s) 869
BspPI GGATC 1 cut(s) 298
BsrFI RCCGGY 2 cut(s) 382, 825
BsrI ACTGG 4 cut(s) 375, 862, 869, 1023
BssAI RCCGGY 2 cut(s) 382, 825
BssECI CCNNGG 2 cut(s) 41, 272
BssMI GATC 2 cut(s) 290, 463
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 2 cut(s) 41, 272
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 580
BstAPI GCANNNNNTGC 2 cut(s) 958, 1056
BstBAI YACGTR 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 281, 333, 391
BstDEI CTNAG 5 cut(s) 225, 309, 585, 795, 919
BstF5I GGATG 4 cut(s) 10, 37, 98, 293
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 2 cut(s) 293, 466
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 290, 463
BstMWI GCNNNNNNNGC 5 cut(s) 285, 846, 958, 1044, 1056
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 283
BstPAI GACNNNNGTC 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 2 cut(s) 333, 906
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 398, 1034
BstV2I GAAGAC 1 cut(s) 425
Bsu36I CCTNAGG 1 cut(s) 795
BsuRI GGCC 3 cut(s) 216, 233, 331
BtgZI GCGATG 2 cut(s) 75, 132
BtsCI GGATG 4 cut(s) 10, 37, 98, 293
BtsIMutI CAGTG 1 cut(s) 876
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 3 cut(s) 281, 333, 391
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 883
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 382, 825
Cfr13I GGNCC 3 cut(s) 231, 232, 758
Csp6I GTAC 1 cut(s) 947
CspAI ACCGGT 1 cut(s) 825
CviAII CATG 5 cut(s) 280, 394, 437, 542, 884
CviQI GTAC 1 cut(s) 947
DdeI CTNAG 5 cut(s) 225, 309, 585, 795, 919
DpnI GATC 2 cut(s) 292, 465
DpnII GATC 2 cut(s) 290, 463
DraIII CACNNNGTG 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 41, 272
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 2 cut(s) 235, 978
Eco47I GGWCC 1 cut(s) 758
Eco81I CCTNAGG 1 cut(s) 795
Eco88I CYCGRG 2 cut(s) 346, 457
EcoO109I RGGNCCY 2 cut(s) 231, 232
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 41, 272
EcoT22I ATGCAT 2 cut(s) 13, 963
EcoT38I GRGCYC 2 cut(s) 235, 978
ErhI CCWWGG 2 cut(s) 41, 272
FaeI CATG 5 cut(s) 283, 397, 440, 545, 887
FatI CATG 5 cut(s) 279, 393, 436, 541, 883
Fnu4HI GCNGC 4 cut(s) 79, 387, 1005, 1048
FokI GGATG 4 cut(s) 17, 24, 85, 280
FriOI GRGCYC 2 cut(s) 235, 978
Fsp4HI GCNGC 4 cut(s) 79, 387, 1005, 1048
FspBI CTAG 1 cut(s) 929
GlaI GCGC 1 cut(s) 22
GluI GCNGC 4 cut(s) 79, 387, 1005, 1048
HaeIII GGCC 3 cut(s) 216, 233, 331
HapII CCGG 6 cut(s) 383, 489, 507, 525, 805, 826
HhaI GCGC 1 cut(s) 23
Hin1II CATG 5 cut(s) 283, 397, 440, 545, 887
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HpaII CCGG 6 cut(s) 383, 489, 507, 525, 805, 826
HphI GGTGA 3 cut(s) 65, 105, 539
Hpy166II GTNNAC 2 cut(s) 380, 530
Hpy188I TCNGA 7 cut(s) 264, 318, 480, 651, 832, 922, 937
Hpy188III TCNNGA 6 cut(s) 457, 459, 489, 507, 805, 884
Hpy8I GTNNAC 2 cut(s) 380, 530
HpyAV CCTTC 3 cut(s) 100, 625, 749
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 3 cut(s) 142, 654, 945
HpyF10VI GCNNNNNNNGC 5 cut(s) 285, 846, 958, 1044, 1056
HpyF3I CTNAG 5 cut(s) 225, 309, 585, 795, 919
HpySE526I ACGT 3 cut(s) 142, 654, 945
Hsp92II CATG 5 cut(s) 283, 397, 440, 545, 887
HspAI GCGC 1 cut(s) 21
Kpn2I TCCGGA 3 cut(s) 488, 506, 804
Kzo9I GATC 2 cut(s) 290, 463
LmnI GCTCC 3 cut(s) 276, 652, 837
Lsp1109I GCAGC 2 cut(s) 398, 1034
LweI GCATC 3 cut(s) 46, 312, 948
MaeI CTAG 1 cut(s) 929
MaeII ACGT 3 cut(s) 142, 654, 945
MaeIII GTNAC 2 cut(s) 196, 580
MalI GATC 2 cut(s) 292, 465
MboI GATC 2 cut(s) 290, 463
MboII GAAGA 5 cut(s) 188, 249, 260, 425, 758
MhlI GDGCHC 2 cut(s) 235, 978
MluCI AATT 5 cut(s) 82, 467, 548, 603, 808
MlyI GAGTC 4 cut(s) 230, 358, 911, 941
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 9 cut(s) 112, 133, 241, 316, 580, 652, 664, 711, 880
Mph1103I ATGCAT 2 cut(s) 13, 963
MroI TCCGGA 3 cut(s) 488, 506, 804
MseI TTAA 2 cut(s) 69, 606
MspI CCGG 6 cut(s) 383, 489, 507, 525, 805, 826
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 5 cut(s) 285, 846, 958, 1044, 1056
NdeII GATC 2 cut(s) 290, 463
NlaIII CATG 5 cut(s) 283, 397, 440, 545, 887
NlaIV GGNNCC 3 cut(s) 232, 233, 648
NsiI ATGCAT 2 cut(s) 13, 963
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 457
PagI TCATGA 1 cut(s) 883
PceI AGGCCT 1 cut(s) 331
PfeI GAWTC 7 cut(s) 155, 265, 354, 419, 610, 737, 767
PinAI ACCGGT 1 cut(s) 825
PkrI GCNGC 4 cut(s) 80, 388, 1006, 1049
PleI GAGTC 4 cut(s) 229, 357, 911, 940
PpsI GAGTC 4 cut(s) 229, 357, 911, 940
Ppu21I YACGTR 1 cut(s) 946
PshAI GACNNNNGTC 1 cut(s) 348
PsiI TTATAA 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 232, 233, 648
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 231, 232, 758
PsrI GAACNNNNNNTAC 2 cut(s) 930, 962
PstI CTGCAG 2 cut(s) 337, 910
PstNI CAGNNNCTG 1 cut(s) 584
RsaI GTAC 1 cut(s) 948
RsaNI GTAC 1 cut(s) 947
SaqAI TTAA 2 cut(s) 69, 606
SatI GCNGC 4 cut(s) 79, 387, 1005, 1048
Sau3AI GATC 2 cut(s) 290, 463
Sau96I GGNCC 3 cut(s) 231, 232, 758
SbfI CCTGCAGG 1 cut(s) 337
SchI GAGTC 4 cut(s) 230, 358, 911, 941
ScrFI CCNGG 1 cut(s) 213
SdaI CCTGCAGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 235, 978
SfaNI GCATC 3 cut(s) 46, 312, 948
SfcI CTRYAG 2 cut(s) 333, 906
Sfr274I CTCGAG 1 cut(s) 457
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SphI GCATGC 1 cut(s) 283
Sse8387I CCTGCAGG 1 cut(s) 337
Sse9I AATT 5 cut(s) 82, 467, 548, 603, 808
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 4 cut(s) 76, 79, 288, 1005
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 929
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 2 cut(s) 41, 272
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 3 cut(s) 145, 657, 948
TaqI TCGA 5 cut(s) 352, 362, 458, 669, 729
TasI AATT 5 cut(s) 82, 467, 548, 603, 808
TauI GCSGC 2 cut(s) 81, 1007
TfiI GAWTC 7 cut(s) 155, 265, 354, 419, 610, 737, 767
Tru1I TTAA 2 cut(s) 69, 606
Tru9I TTAA 2 cut(s) 69, 606
TscAI CASTG 1 cut(s) 876
TseI GCWGC 2 cut(s) 386, 1047
TspDTI ATGAA 7 cut(s) 135, 425, 432, 561, 750, 780, 810
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 457
XspI CTAG 1 cut(s) 929
Zsp2I ATGCAT 2 cut(s) 13, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.