Rroxscaffold_2G00085470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013173
Physical Location & Seq
Forward (+)
7761734 .. 7763576
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085470.1

Sequence Viewer

Length: 999 bp
ATGGCTTATGCATATAGCGATGAAAGTAATAAACACCTAAAGGTTCATTTCGCATCTGAACCCATAAATCGCTGCCCGAGTTCAAGCTGCTACACATCTTCTTCTTGTTCCTCTTCATCACCTTCATCACTGGACGAACCATATGATATTGACAAAGCTGAGGTTGATCCGTCTCCCGAAGCTAAACAACCGGACCTAAATGAGCCTCCGGCGCCTGTGCCATCACCAGAGGTTACTTCACAGACTACTGTTTGGAGCACTGGGTCATCATCTTCACAATCTCCTCCTCAAATTCCAATGGCGGGCGGGCGGCCTTCCGGATATGATGCAAATCGACTCCCATCAGCTATGTTTGCTGCTAAGCCTTCATCTGCTATGGATTGGAGTGTTGCTTCAAATGAATCATTGTTTAGTATTCATGTGGGGAATAACAGCTTCTCAAGAGACCAGTATTTCGTCATGTTCAACAAGTCTGGAGAACTGGGGAAGCTTGATGAGATGTTCCTCAATGTTCCAACACCGCTCTCCCCAGTTAGCGAGACTGTGGAAACTAAGCCGAATTCCAATGCGTTAGTAGAGACGCTTGAAACTGATCATCACAGTGTGGAGACGGAGAGTGTCGAAACTAAGAGTGAAATTTCGGAGGAAGAGAATGTTGTGATGGTGACCGGGAAGGTAGAGAAAGACGAAAATACCAAAGAGACAGTTAGGCTGCCTACTATGGAGGAAACCAAGGGTTCTGCCTTCTCTCACCGTTCGAATGAGAGCAATCATAGCAATCAATCTTTCCAATTTCCAGTGTTGGCAGGTCATCATGATCACCATGACCATGTAAAGCACCCATTAGAGCAAGTGAAAGAGGAGAAGCAGGAGATTCCGGCGCCTAAGCAAGAGCAGGATCAGCCACAGCCCGAAAGCCCTGAAAGAAATGCACCATTAAAGGCTACACGAAGCAGCAGTTGGTTGTCTTGCTTTTCTTGCTGCTGGATCTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.59

Weight (kDa)

4.94

Isoelectric Point (pI)

72.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 797
AccB1I GGYRCC 2 cut(s) 211, 880
AccBSI CCGCTC 1 cut(s) 523
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 4 cut(s) 302, 306, 310, 521
AclWI GGATC 3 cut(s) 161, 906, 995
AcsI RAATTY 3 cut(s) 291, 559, 636
AcyI GRCGYC 2 cut(s) 212, 881
AdeI CACNNNGTG 1 cut(s) 604
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 84, 396, 466, 587
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
AluBI AGCT 6 cut(s) 87, 158, 182, 347, 435, 490
AluI AGCT 6 cut(s) 87, 158, 182, 347, 435, 490
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
AlwI GGATC 3 cut(s) 161, 906, 995
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 6 cut(s) 72, 87, 356, 712, 954, 981
ApoI RAATTY 3 cut(s) 291, 559, 636
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AspLEI GCGC 2 cut(s) 214, 883
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 5 cut(s) 111, 216, 676, 743, 812
AsuII TTCGAA 1 cut(s) 758
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 193
BanI GGYRCC 2 cut(s) 211, 880
Bbv12I GWGCWC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 6 cut(s) 59, 74, 343, 699, 966, 968
BccI CCATC 3 cut(s) 229, 349, 655
BclI TGATCA 2 cut(s) 592, 817
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
BfoI RGCGCY 2 cut(s) 215, 884
BfuAI ACCTGC 1 cut(s) 797
BisI GCNGC 7 cut(s) 73, 88, 311, 357, 713, 955, 982
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 7 cut(s) 74, 89, 312, 358, 714, 956, 983
Bme1390I CCNGG 1 cut(s) 670
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 213, 882
BmrFI CCNGG 1 cut(s) 670
BmrI ACTGGG 3 cut(s) 270, 491, 524
BmsI GCATC 2 cut(s) 62, 316
BmuI ACTGGG 3 cut(s) 270, 491, 524
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 159, 885
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 2 cut(s) 212, 881
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 2 cut(s) 190, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 993
Bse1I ACTGG 6 cut(s) 135, 265, 448, 486, 530, 797
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 732
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 6 cut(s) 135, 265, 448, 486, 530, 797
BseRI GAGGAG 3 cut(s) 273, 276, 875
BseXI GCAGC 6 cut(s) 59, 74, 343, 699, 966, 968
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 2 cut(s) 211, 880
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 191, 209, 318, 669, 878, 994
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
BsmBI CGTCTC 3 cut(s) 177, 572, 602
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 758
Bsp1286I GDGCHC 1 cut(s) 260
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 5 cut(s) 166, 592, 817, 898, 987
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 302, 306, 310, 521
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 317
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 213, 882
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 3 cut(s) 161, 906, 995
BspT104I TTCGAA 1 cut(s) 758
BspT107I GGYRCC 2 cut(s) 211, 880
BspTNI GGTCTC 1 cut(s) 438
BsrBI CCGCTC 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 993
BsrI ACTGG 6 cut(s) 135, 265, 448, 486, 530, 797
BssAI RCCGGY 1 cut(s) 993
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 5 cut(s) 166, 592, 817, 898, 987
BssNI GRCGYC 2 cut(s) 212, 881
BssT1I CCWWGG 1 cut(s) 732
Bst4CI ACNGT 5 cut(s) 250, 544, 602, 706, 755
Bst6I CTCTTC 2 cut(s) 118, 642
BstACI GRCGYC 2 cut(s) 212, 881
BstBI TTCGAA 1 cut(s) 758
BstC8I GCNNGC 2 cut(s) 304, 308
BstDEI CTNAG 5 cut(s) 159, 360, 552, 627, 885
BstEII GGTNACC 1 cut(s) 664
BstH2I RGCGCY 2 cut(s) 215, 884
BstHHI GCGC 2 cut(s) 214, 883
BstKTI GATC 5 cut(s) 169, 595, 820, 901, 990
BstMAI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 695
BstMBI GATC 5 cut(s) 166, 592, 817, 898, 987
BstMWI GCNNNNNNNGC 6 cut(s) 211, 353, 774, 901, 978, 990
BstPI GGTNACC 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 668
BstV1I GCAGC 6 cut(s) 59, 74, 343, 699, 966, 968
BstX2I RGATCY 1 cut(s) 987
BstYI RGATCY 1 cut(s) 987
BsuRI GGCC 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 128, 258, 607, 804
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 2 cut(s) 304, 308
CciI TCATGA 1 cut(s) 814
CfoI GCGC 2 cut(s) 214, 883
Cfr10I RCCGGY 1 cut(s) 993
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 589
CviAII CATG 5 cut(s) 419, 460, 815, 824, 830
DdeI CTNAG 5 cut(s) 159, 360, 552, 627, 885
DinI GGCGCC 2 cut(s) 213, 882
DpnI GATC 5 cut(s) 168, 594, 819, 900, 989
DpnII GATC 5 cut(s) 166, 592, 817, 898, 987
DraIII CACNNNGTG 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 118, 642
EarI CTCTTC 2 cut(s) 118, 642
Eco130I CCWWGG 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 2 cut(s) 213, 882
EheI GGCGCC 2 cut(s) 213, 882
ErhI CCWWGG 1 cut(s) 732
Esp3I CGTCTC 3 cut(s) 177, 572, 602
FaeI CATG 5 cut(s) 422, 463, 818, 827, 833
FatI CATG 5 cut(s) 418, 459, 814, 823, 829
FauI CCCGC 2 cut(s) 295, 299
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 592, 817
Fnu4HI GCNGC 7 cut(s) 73, 88, 311, 357, 713, 955, 982
Fsp4HI GCNGC 7 cut(s) 73, 88, 311, 357, 713, 955, 982
GlaI GCGC 2 cut(s) 213, 882
GluI GCNGC 7 cut(s) 73, 88, 311, 357, 713, 955, 982
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 2 cut(s) 215, 884
HaeIII GGCC 1 cut(s) 313
HapII CCGG 6 cut(s) 191, 209, 318, 669, 878, 994
HgaI GACGC 1 cut(s) 589
HhaI GCGC 2 cut(s) 214, 883
Hin1I GRCGYC 2 cut(s) 212, 881
Hin1II CATG 5 cut(s) 422, 463, 818, 827, 833
Hin6I GCGC 2 cut(s) 212, 881
HinP1I GCGC 2 cut(s) 212, 881
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 3 cut(s) 336, 401, 874
HpaII CCGG 6 cut(s) 191, 209, 318, 669, 878, 994
HphI GGTGA 5 cut(s) 111, 216, 676, 743, 812
Hpy188I TCNGA 2 cut(s) 58, 643
Hpy188III TCNNGA 5 cut(s) 176, 318, 441, 474, 815
HpyAV CCTTC 5 cut(s) 132, 324, 375, 667, 754
HpyCH4III ACNGT 5 cut(s) 250, 544, 602, 706, 755
HpyCH4V TGCA 3 cut(s) 11, 329, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 353, 774, 901, 978, 990
HpyF3I CTNAG 5 cut(s) 159, 360, 552, 627, 885
Hsp92I GRCGYC 2 cut(s) 212, 881
Hsp92II CATG 5 cut(s) 422, 463, 818, 827, 833
HspAI GCGC 2 cut(s) 212, 881
KasI GGCGCC 2 cut(s) 211, 880
Kpn2I TCCGGA 1 cut(s) 317
Ksp22I TGATCA 2 cut(s) 592, 817
Kzo9I GATC 5 cut(s) 166, 592, 817, 898, 987
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 6 cut(s) 59, 74, 343, 699, 966, 968
LweI GCATC 2 cut(s) 62, 316
MaeIII GTNAC 2 cut(s) 232, 664
MalI GATC 5 cut(s) 168, 594, 819, 900, 989
MbiI CCGCTC 1 cut(s) 523
MboI GATC 5 cut(s) 166, 592, 817, 898, 987
MboII GAAGA 5 cut(s) 90, 93, 105, 264, 659
MflI RGATCY 1 cut(s) 987
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 4 cut(s) 291, 559, 636, 791
Mly113I GGCGCC 2 cut(s) 212, 881
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 1 cut(s) 317
MseI TTAA 1 cut(s) 938
MslI CAYNNNNRTG 2 cut(s) 600, 828
MspI CCGG 6 cut(s) 191, 209, 318, 669, 878, 994
MspR9I CCNGG 1 cut(s) 670
MwoI GCNNNNNNNGC 6 cut(s) 211, 353, 774, 901, 978, 990
NarI GGCGCC 2 cut(s) 212, 881
NciI CCSGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 142
NdeII GATC 5 cut(s) 166, 592, 817, 898, 987
NlaIII CATG 5 cut(s) 422, 463, 818, 827, 833
NlaIV GGNNCC 2 cut(s) 213, 882
NmuCI GTSAC 1 cut(s) 664
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 758
PagI TCATGA 1 cut(s) 814
PfeI GAWTC 2 cut(s) 401, 874
PkrI GCNGC 7 cut(s) 74, 89, 312, 358, 714, 956, 983
PleI GAGTC 1 cut(s) 330
PluTI GGCGCC 2 cut(s) 215, 884
PpsI GAGTC 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 213, 882
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 987
RseI CAYNNNNRTG 2 cut(s) 600, 828
SaqAI TTAA 1 cut(s) 938
SatI GCNGC 7 cut(s) 73, 88, 311, 357, 713, 955, 982
Sau3AI GATC 5 cut(s) 166, 592, 817, 898, 987
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 2 cut(s) 62, 316
SfoI GGCGCC 2 cut(s) 213, 882
SfuI TTCGAA 1 cut(s) 758
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 600, 828
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 4 cut(s) 291, 559, 636, 791
SsiI CCGC 4 cut(s) 302, 306, 310, 521
SspDI GGCGCC 2 cut(s) 211, 880
StyD4I CCNGG 1 cut(s) 668
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 5 cut(s) 250, 544, 602, 706, 755
TaqI TCGA 3 cut(s) 334, 621, 758
TasI AATT 4 cut(s) 291, 559, 636, 791
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 2 cut(s) 401, 874
Tru1I TTAA 1 cut(s) 938
Tru9I TTAA 1 cut(s) 938
TscAI CASTG 4 cut(s) 135, 265, 607, 804
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 6 cut(s) 72, 87, 356, 712, 954, 981
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 7 cut(s) 35, 36, 105, 114, 357, 407, 414
TspGWI ACGGA 2 cut(s) 159, 626
TspRI CASTG 4 cut(s) 135, 265, 607, 804
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 3 cut(s) 291, 559, 636
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.