Rh2CG566700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013173
Physical Location & Seq
Reverse (-)
74747601 .. 74749203
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG566700.1

Sequence Viewer

Length: 1002 bp
ATGGCTTATGCATATAGCGATGAAAGTAATAAGCACCTAAAGGTTCATTTCGCATCTGAACCCATAAATCGCTGCCCGAGTTCAAGCTGCTACACATCTTCTTCTTGTTCCTCCTCATCATCTTCATCACTGGACGAACCATATGATATTGACAAAGCTGAGGTTGATCCGTCTCCCGAAGCTAAACAACCAGACCTAAATGAGCCTCCGGCGCCTGTGCCAGCACCAGAGGTTACTTCACAGACTACTGTTTGGAGCACTGGGTCATCATCTTCACAATCTCCTCCTCAAATTCCAATGGCGGGCGGGCGGCCTTCCGGATATGATCCAAATCGACTCCCATCAGCTATGTTTGCTGCTAAGCCTTCATCTGCTATGGATTGGAGTGTTGCTTCAAATGAATCATTGTTTAGTATTCATGTGGGGAATAACAGCTTCTCAAGAGACCAGTATTTCGTCATGTTCAACAAGTCTGGAGAACTGGGGAAGCTTGATGAGATGTTCCTCAATGTTCCAACTCCGCTTTCCCCAGTTACCGAGACTGTGGAAACTAAGCCGAGTTCCAATGCGTTAGTAGAGACGCTTGAAACTGATCATCACAGTGTGGAGACGGAGAGTGTCGAAACTAAGAGTGAAATTTCGGAGGAAGAGAATGTTGTGATGGTGACCGGGAAGGTCGTAGAGAAAGACAAAAAAACCAAAGAGACAGTTAGGCTGCCTACTATGGAGGAAACCAAGGGTTCTGCCTTCTCTCATCGTTCGAATGAGAGCAATCATAGTAATCAATCTTTCCAATTTCCAGTGTTGGCAGGTCATCATGATCACCATGACCATGTAAAGCACCCATTAGAGCAAGTGAAAGAGGAGAAGCAGGAGATGCCGGCGCCTAAGCATGAGCAGGATCAGCCACAGCCCGAAAGCCCTGAAAGAAATGCACCATTAAAGGCTACACGAAGCAGCAGTTGGTTGTCTTGCTTTTCTTGCTGCTGGATCTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

36.71

Weight (kDa)

5.14

Isoelectric Point (pI)

71.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39140 AT5G39170 AT5G39200
fragaria_vesca FvH4_6g46831
malus_domestica MD09G1067000.v1.1 MD17G1059900.v1.1
prunus_persica Prupe.3G254700_v2.0.a1
pyrus_communis pycom111g05630 pycom17g05960
rosa_laevigata RLG00000021559
rosa_multiflora Rmu_sc0003227.1_g000003
rosa_roxburghii Rroxscaffold_2G00085470
rosa_rugosa Rorug02G0518100
rosa_samantha Rh2AG583800 Rh2BG595800 Rh2CG566700 Rh2DG605600
rosa_wichuraiana Rw2G048680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 800
AccB1I GGYRCC 2 cut(s) 211, 883
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 4 cut(s) 302, 306, 310, 521
AclWI GGATC 4 cut(s) 161, 320, 909, 998
AcsI RAATTY 2 cut(s) 291, 636
AcyI GRCGYC 2 cut(s) 212, 884
AdeI CACNNNGTG 1 cut(s) 604
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 84, 396, 466, 587
AjuI GAANNNNNNNTTGG 4 cut(s) 508, 540, 946, 978
AluBI AGCT 6 cut(s) 87, 158, 182, 347, 435, 490
AluI AGCT 6 cut(s) 87, 158, 182, 347, 435, 490
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 6 cut(s) 177, 438, 533, 572, 602, 698
AlwI GGATC 4 cut(s) 161, 320, 909, 998
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 6 cut(s) 72, 87, 356, 715, 957, 984
ApoI RAATTY 2 cut(s) 291, 636
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AspLEI GCGC 2 cut(s) 214, 886
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 2 cut(s) 676, 815
AsuII TTCGAA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 76
BanI GGYRCC 2 cut(s) 211, 883
Bbv12I GWGCWC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 6 cut(s) 59, 74, 343, 702, 969, 971
BccI CCATC 2 cut(s) 349, 655
BclI TGATCA 2 cut(s) 592, 820
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 698
BfoI RGCGCY 2 cut(s) 215, 887
BfuAI ACCTGC 1 cut(s) 800
BisI GCNGC 7 cut(s) 73, 88, 311, 357, 716, 958, 985
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 7 cut(s) 74, 89, 312, 358, 717, 959, 986
Bme1390I CCNGG 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 213, 885
BmrFI CCNGG 1 cut(s) 670
BmrI ACTGGG 3 cut(s) 270, 491, 524
BmsI GCATC 2 cut(s) 62, 867
BmuI ACTGGG 3 cut(s) 270, 491, 524
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 159, 888
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 2 cut(s) 212, 884
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 2 cut(s) 880, 996
Bse1I ACTGG 6 cut(s) 135, 265, 448, 486, 530, 800
Bse8I GATNNNNATC 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 735
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 6 cut(s) 135, 265, 448, 486, 530, 800
BseRI GAGGAG 4 cut(s) 103, 273, 276, 878
BseXI GCAGC 6 cut(s) 59, 74, 343, 702, 969, 971
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 2 cut(s) 211, 883
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 5 cut(s) 209, 318, 669, 881, 997
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 698
BsmBI CGTCTC 3 cut(s) 177, 572, 602
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 260
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 6 cut(s) 166, 325, 592, 820, 901, 990
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 302, 306, 310, 521
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 317
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 2 cut(s) 213, 885
BspMI ACCTGC 1 cut(s) 800
BspPI GGATC 4 cut(s) 161, 320, 909, 998
BspT104I TTCGAA 1 cut(s) 761
BspT107I GGYRCC 2 cut(s) 211, 883
BspTNI GGTCTC 1 cut(s) 438
BsrFI RCCGGY 2 cut(s) 880, 996
BsrI ACTGG 6 cut(s) 135, 265, 448, 486, 530, 800
BssAI RCCGGY 2 cut(s) 880, 996
BssECI CCNNGG 1 cut(s) 735
BssMI GATC 6 cut(s) 166, 325, 592, 820, 901, 990
BssNI GRCGYC 2 cut(s) 212, 884
BssT1I CCWWGG 1 cut(s) 735
Bst4CI ACNGT 4 cut(s) 250, 544, 602, 709
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 2 cut(s) 212, 884
BstAPI GCANNNNNTGC 1 cut(s) 877
BstBI TTCGAA 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 222, 304, 308, 882
BstDEI CTNAG 5 cut(s) 159, 360, 552, 627, 888
BstEII GGTNACC 1 cut(s) 664
BstH2I RGCGCY 2 cut(s) 215, 887
BstHHI GCGC 2 cut(s) 214, 886
BstKTI GATC 6 cut(s) 169, 328, 595, 823, 904, 993
BstMAI GTCTC 6 cut(s) 177, 438, 533, 572, 602, 698
BstMBI GATC 6 cut(s) 166, 325, 592, 820, 901, 990
BstMWI GCNNNNNNNGC 6 cut(s) 211, 353, 877, 904, 981, 993
BstPI GGTNACC 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 668
BstV1I GCAGC 6 cut(s) 59, 74, 343, 702, 969, 971
BstX2I RGATCY 1 cut(s) 990
BstYI RGATCY 1 cut(s) 990
BsuRI GGCC 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 128, 258, 607, 807
BveI ACCTGC 1 cut(s) 800
Cac8I GCNNGC 4 cut(s) 222, 304, 308, 882
CciI TCATGA 1 cut(s) 817
CfoI GCGC 2 cut(s) 214, 886
Cfr10I RCCGGY 2 cut(s) 880, 996
CseI GACGC 1 cut(s) 589
CviAII CATG 6 cut(s) 419, 460, 818, 827, 833, 893
DdeI CTNAG 5 cut(s) 159, 360, 552, 627, 888
DinI GGCGCC 2 cut(s) 213, 885
DpnI GATC 6 cut(s) 168, 327, 594, 822, 903, 992
DpnII GATC 6 cut(s) 166, 325, 592, 820, 901, 990
DraIII CACNNNGTG 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 2 cut(s) 213, 885
EheI GGCGCC 2 cut(s) 213, 885
ErhI CCWWGG 1 cut(s) 735
Esp3I CGTCTC 3 cut(s) 177, 572, 602
FaeI CATG 6 cut(s) 422, 463, 821, 830, 836, 896
FatI CATG 6 cut(s) 418, 459, 817, 826, 832, 892
FauI CCCGC 2 cut(s) 295, 299
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 592, 820
Fnu4HI GCNGC 7 cut(s) 73, 88, 311, 357, 716, 958, 985
Fsp4HI GCNGC 7 cut(s) 73, 88, 311, 357, 716, 958, 985
GlaI GCGC 2 cut(s) 213, 885
GluI GCNGC 7 cut(s) 73, 88, 311, 357, 716, 958, 985
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 2 cut(s) 215, 887
HaeIII GGCC 1 cut(s) 313
HapII CCGG 5 cut(s) 209, 318, 669, 881, 997
HgaI GACGC 1 cut(s) 589
HhaI GCGC 2 cut(s) 214, 886
Hin1I GRCGYC 2 cut(s) 212, 884
Hin1II CATG 6 cut(s) 422, 463, 821, 830, 836, 896
Hin6I GCGC 2 cut(s) 212, 884
HinP1I GCGC 2 cut(s) 212, 884
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 336, 401
HpaII CCGG 5 cut(s) 209, 318, 669, 881, 997
HphI GGTGA 2 cut(s) 676, 815
Hpy188I TCNGA 2 cut(s) 58, 643
Hpy188III TCNNGA 5 cut(s) 176, 318, 441, 474, 818
HpyAV CCTTC 4 cut(s) 324, 375, 667, 757
HpyCH4III ACNGT 4 cut(s) 250, 544, 602, 709
HpyCH4V TGCA 2 cut(s) 11, 935
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 353, 877, 904, 981, 993
HpyF3I CTNAG 5 cut(s) 159, 360, 552, 627, 888
Hsp92I GRCGYC 2 cut(s) 212, 884
Hsp92II CATG 6 cut(s) 422, 463, 821, 830, 836, 896
HspAI GCGC 2 cut(s) 212, 884
KasI GGCGCC 2 cut(s) 211, 883
Kpn2I TCCGGA 1 cut(s) 317
KroI GCCGGC 1 cut(s) 880
KroNI GCCGGC 1 cut(s) 882
Ksp22I TGATCA 2 cut(s) 592, 820
Kzo9I GATC 6 cut(s) 166, 325, 592, 820, 901, 990
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 6 cut(s) 59, 74, 343, 702, 969, 971
LweI GCATC 2 cut(s) 62, 867
MaeIII GTNAC 3 cut(s) 232, 532, 664
MalI GATC 6 cut(s) 168, 327, 594, 822, 903, 992
MboI GATC 6 cut(s) 166, 325, 592, 820, 901, 990
MboII GAAGA 5 cut(s) 90, 93, 114, 264, 659
MflI RGATCY 1 cut(s) 990
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 3 cut(s) 291, 636, 794
Mly113I GGCGCC 2 cut(s) 212, 884
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 880
MseI TTAA 1 cut(s) 941
MslI CAYNNNNRTG 2 cut(s) 600, 831
MspI CCGG 5 cut(s) 209, 318, 669, 881, 997
MspR9I CCNGG 1 cut(s) 670
MwoI GCNNNNNNNGC 6 cut(s) 211, 353, 877, 904, 981, 993
NaeI GCCGGC 1 cut(s) 882
NarI GGCGCC 2 cut(s) 212, 884
NciI CCSGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 166, 325, 592, 820, 901, 990
NgoMIV GCCGGC 1 cut(s) 880
NlaIII CATG 6 cut(s) 422, 463, 821, 830, 836, 896
NlaIV GGNNCC 2 cut(s) 213, 885
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 664
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 761
PagI TCATGA 1 cut(s) 817
PdiI GCCGGC 1 cut(s) 882
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 7 cut(s) 74, 89, 312, 358, 717, 959, 986
PleI GAGTC 1 cut(s) 330
PluTI GGCGCC 2 cut(s) 215, 887
PpsI GAGTC 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 213, 885
PsuI RGATCY 1 cut(s) 990
RseI CAYNNNNRTG 2 cut(s) 600, 831
SaqAI TTAA 1 cut(s) 941
SatI GCNGC 7 cut(s) 73, 88, 311, 357, 716, 958, 985
Sau3AI GATC 6 cut(s) 166, 325, 592, 820, 901, 990
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 2 cut(s) 62, 867
SfoI GGCGCC 2 cut(s) 213, 885
SfuI TTCGAA 1 cut(s) 761
SmiMI CAYNNNNRTG 2 cut(s) 600, 831
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 3 cut(s) 291, 636, 794
SsiI CCGC 4 cut(s) 302, 306, 310, 521
SspDI GGCGCC 2 cut(s) 211, 883
StyD4I CCNGG 1 cut(s) 668
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 4 cut(s) 250, 544, 602, 709
TaqI TCGA 3 cut(s) 334, 621, 761
TasI AATT 3 cut(s) 291, 636, 794
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 941
Tru9I TTAA 1 cut(s) 941
TscAI CASTG 4 cut(s) 135, 265, 607, 807
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 6 cut(s) 72, 87, 356, 715, 957, 984
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 6 cut(s) 35, 36, 114, 357, 407, 414
TspGWI ACGGA 2 cut(s) 159, 626
TspRI CASTG 4 cut(s) 135, 265, 607, 807
XapI RAATTY 2 cut(s) 291, 636
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.