AT5G41060

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008943
Physical Location & Seq
Forward (+)
16435153 .. 16437805
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41060.1

Sequence Viewer

Length: 1233 bp
ATGTATGTGGTGACGCCTCCTCAAAGATCCGGTTTTGGATCCGATTGTGATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATTTTGTCTTCAAGGAAGGTTTATCTTCGGGCCGGATGTAAGATCACTTGGTCTGACCATAAGTCTTATTGTGGCACCTGTTACAATTTTCTGCATCTTCGTCGCTAGCAAACTAATGGATGACTTCTCTGATAGTTGGGGAGTCTCAATAATCCTTGTTGCTGTTGTCTTCACCATTTATGATTTGATTTTGCTGATGCTTACATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTCCAGAACCAGAAGTTGTTGATGGCAACACGGGCTCGGGAACAAGCCAAACTCCAAGATTGCCTCGTGTTAAAGAAGTGGAAGTTAATGGAAAAGTATTCAAGGTCAAGTACTGTGATACTTGCATGCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAAGAAACTATCGATTCTTCTTCATGTTTGTCTTCTCCACGACTCTTCTCTGTGTATATGTGTTCGCCTTTTGTTGTGTCTACATAAAGAAGATCAAAGAGTCCGAAGATATAAGTATCTTGAAAGCAATGCTCAAAACTCCAGCTTCCATTGCTCTGATACTCTACACATTCATATCTACATTCTTCGTTGGAGGCTTAACATGTTTCCATCTCTATCTCATCAGCACAAATCAGACTACATATGAGAATTTCAGATACAGTTATGATCGGCATAGCAACCCACATAACAAAGGAGTGGTTGATAACTTCAAAGAAATCTTTTTTTCTCCAATACCTCCTTCAAAGAACAACTTCAGGGCTATGGTACCAAGGGAAAATCCAATGCCGTCGAGATCAGTTGTTGGCGGTTTTATGAGTCCAAACATGGGAAAGGCCAATGATGATATTGAAATGGGGAGGAAGGGTGTTTGGGCAATGGCTGAACATGGTGATGGCAAAGATGGCAATAACAATGAACGGTTTCATGTTAACGACAATGAGTTAAACGAGTTATCACCAGACATGGGGAACATAGTGAATGGTGATGAGCAAATCAATAGGCCAAACAATCACCCGAGGAACGCAAACTGGGAAATGTCACCAGAAGTTATGGCCTTATCAGCAAGAAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

410

Amino Acids

46.37

Weight (kDa)

7.87

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 146 - 271 6.1e-39 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 160, 922
AccI GTMKAC 1 cut(s) 636
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 2 cut(s) 470, 963
AclWI GGATC 4 cut(s) 21, 33, 46, 296
AcsI RAATTY 2 cut(s) 322, 805
AcuI CTGAAG 1 cut(s) 895
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 443, 924
AfiI CCNNNNNNNGG 3 cut(s) 539, 983, 1121
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 6 cut(s) 98, 433, 679, 868, 900, 1007
AhdI GACNNNNNGTC 1 cut(s) 147
AjnI CCWGG 1 cut(s) 304
AjuI GAANNNNNNNTTGG 2 cut(s) 880, 912
AluBI AGCT 2 cut(s) 701, 1229
AluI AGCT 2 cut(s) 701, 1229
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 4 cut(s) 21, 33, 46, 296
Ama87I CYCGRG 2 cut(s) 367, 1171
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 4 cut(s) 116, 990, 1157, 1209
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 2 cut(s) 322, 805
Asp700I GAANNNNTTC 2 cut(s) 908, 1077
Asp718I GGTACC 1 cut(s) 922
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 7 cut(s) 22, 250, 1058, 1104, 1151, 1160, 1188
AsuNHI GCTAGC 1 cut(s) 191
AvaI CYCGRG 2 cut(s) 367, 1171
BamHI GGATCC 1 cut(s) 38
BanI GGYRCC 2 cut(s) 160, 922
BanII GRGCYC 1 cut(s) 368
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 3 cut(s) 86, 247, 580
BbvI GCAGC 1 cut(s) 464
BccI CCATC 5 cut(s) 347, 531, 774, 1043, 1052
BceAI ACGGC 1 cut(s) 928
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 463
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 1 cut(s) 306
BmeRI GACNNNNNGTC 1 cut(s) 147
BmeT110I CYCGRG 2 cut(s) 367, 1171
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 40, 162, 924
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 2 cut(s) 189, 273
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 3 cut(s) 86, 247, 580
BpmI CTGGAG 2 cut(s) 318, 681
Bsa29I ATCGAT 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 305, 533, 926, 1172
BsaWI WCCGGW 2 cut(s) 29, 293
BsaXI ACNNNNNCTCC 2 cut(s) 1006, 1036
Bsc4I CCNNNNNNNGG 3 cut(s) 539, 983, 1121
Bse1I ACTGG 1 cut(s) 1190
Bse3DI GCAATG 3 cut(s) 690, 705, 1038
BseAI TCCGGA 1 cut(s) 293
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 4 cut(s) 305, 533, 926, 1172
BseGI GGATG 4 cut(s) 127, 211, 290, 328
BseLI CCNNNNNNNGG 3 cut(s) 539, 983, 1121
BseMI GCAATG 3 cut(s) 690, 705, 1038
BseNI ACTGG 1 cut(s) 1190
BseRI GAGGAG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 464
BshFI GGCC 4 cut(s) 118, 992, 1159, 1211
BshNI GGYRCC 2 cut(s) 160, 922
BshVI ATCGAT 1 cut(s) 568
BsiHKCI CYCGRG 2 cut(s) 367, 1171
BsiSI CCGG 3 cut(s) 30, 119, 294
BslI CCNNNNNNNGG 3 cut(s) 539, 983, 1121
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 4 cut(s) 118, 992, 1159, 1211
BsoBI CYCGRG 2 cut(s) 367, 1171
Bsp1286I GDGCHC 1 cut(s) 368
Bsp13I TCCGGA 1 cut(s) 293
Bsp143I GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
BspACI CCGC 2 cut(s) 470, 963
BspANI GGCC 4 cut(s) 118, 992, 1159, 1211
BspDI ATCGAT 1 cut(s) 568
BspEI TCCGGA 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 40, 162, 924
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 4 cut(s) 21, 33, 46, 296
BspQI GCTCTTC 1 cut(s) 1219
BspT107I GGYRCC 2 cut(s) 160, 922
BsrDI GCAATG 3 cut(s) 690, 705, 1038
BsrI ACTGG 1 cut(s) 1190
BssECI CCNNGG 4 cut(s) 305, 533, 926, 1172
BssMI GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 533, 926
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 5 cut(s) 446, 506, 530, 818, 1077
Bst6I CTCTTC 3 cut(s) 292, 606, 1219
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 193, 458
BstDEI CTNAG 1 cut(s) 1230
BstF5I GGATG 4 cut(s) 127, 211, 290, 328
BstKTI GATC 7 cut(s) 29, 41, 131, 304, 651, 826, 953
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
BstMWI GCNNNNNNNGC 5 cut(s) 363, 707, 1059, 1217, 1226
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 460, 762
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 3 cut(s) 86, 247, 580
BstX2I RGATCY 3 cut(s) 26, 38, 301
BstYI RGATCY 3 cut(s) 26, 38, 301
Bsu15I ATCGAT 1 cut(s) 568
BsuRI GGCC 4 cut(s) 118, 992, 1159, 1211
BsuTUI ATCGAT 1 cut(s) 568
BtsCI GGATG 4 cut(s) 127, 211, 290, 328
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 193, 458
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 568
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 442, 923
CviAII CATG 8 cut(s) 69, 457, 580, 759, 982, 1043, 1082, 1120
CviQI GTAC 2 cut(s) 442, 923
DdeI CTNAG 1 cut(s) 1230
DpnI GATC 7 cut(s) 28, 40, 130, 303, 650, 825, 952
DpnII GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
DriI GACNNNNNGTC 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 292, 606, 1219
Eam1105I GACNNNNNGTC 1 cut(s) 147
EarI CTCTTC 3 cut(s) 292, 606, 1219
Eco130I CCWWGG 2 cut(s) 533, 926
Eco24I GRGCYC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 895
Eco88I CYCGRG 2 cut(s) 367, 1171
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 533, 926
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 2 cut(s) 533, 926
FaeI CATG 8 cut(s) 72, 460, 583, 762, 985, 1046, 1085, 1123
FalI AAGNNNNNCTT 3 cut(s) 893, 925, 1213
FatI CATG 8 cut(s) 68, 456, 579, 758, 981, 1042, 1081, 1119
FauNDI CATATG 1 cut(s) 799
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 4 cut(s) 134, 218, 277, 315
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 478
GsuI CTGGAG 2 cut(s) 318, 681
HaeIII GGCC 4 cut(s) 118, 992, 1159, 1211
HapII CCGG 3 cut(s) 30, 119, 294
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 8 cut(s) 72, 460, 583, 762, 985, 1046, 1085, 1123
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HinfI GANTC 5 cut(s) 228, 570, 598, 656, 973
HpaI GTTAAC 1 cut(s) 1087
HpaII CCGG 3 cut(s) 30, 119, 294
HphI GGTGA 7 cut(s) 22, 250, 1058, 1104, 1151, 1160, 1188
Hpy166II GTNNAC 3 cut(s) 61, 637, 1087
Hpy188I TCNGA 7 cut(s) 43, 141, 217, 661, 714, 792, 812
Hpy188III TCNNGA 5 cut(s) 294, 335, 369, 676, 948
Hpy8I GTNNAC 3 cut(s) 61, 637, 1087
Hpy99I CGWCG 2 cut(s) 191, 949
HpyAV CCTTC 3 cut(s) 96, 906, 1012
HpyCH4III ACNGT 5 cut(s) 446, 506, 530, 818, 1077
HpyCH4V TGCA 3 cut(s) 180, 456, 498
HpyF10VI GCNNNNNNNGC 5 cut(s) 363, 707, 1059, 1217, 1226
HpyF3I CTNAG 1 cut(s) 1230
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 8 cut(s) 72, 460, 583, 762, 985, 1046, 1085, 1123
Kpn2I TCCGGA 1 cut(s) 293
KpnI GGTACC 1 cut(s) 926
KspAI GTTAAC 1 cut(s) 1087
Kzo9I GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
LguI GCTCTTC 1 cut(s) 1219
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 2 cut(s) 189, 273
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 10, 166, 1194
MalI GATC 7 cut(s) 28, 40, 130, 303, 650, 825, 952
MboI GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
MflI RGATCY 3 cut(s) 26, 38, 301
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 171, 322, 805
MlyI GAGTC 4 cut(s) 237, 592, 665, 982
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 9 cut(s) 27, 30, 342, 405, 483, 743, 903, 1008, 1167
MroI TCCGGA 1 cut(s) 293
MroXI GAANNNNTTC 2 cut(s) 908, 1077
MseI TTAA 5 cut(s) 402, 417, 755, 1086, 1100
MslI CAYNNNNRTG 1 cut(s) 1047
MspI CCGG 3 cut(s) 30, 119, 294
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 5 cut(s) 363, 707, 1059, 1217, 1226
NdeI CATATG 1 cut(s) 799
NdeII GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 8 cut(s) 72, 460, 583, 762, 985, 1046, 1085, 1123
NlaIV GGNNCC 3 cut(s) 40, 162, 924
NmuCI GTSAC 2 cut(s) 10, 1194
NspI RCATGY 2 cut(s) 460, 762
PaeI GCATGC 1 cut(s) 460
PciI ACATGT 1 cut(s) 758
PciSI GCTCTTC 1 cut(s) 1219
PdmI GAANNNNTTC 2 cut(s) 908, 1077
PfeI GAWTC 1 cut(s) 570
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 4 cut(s) 236, 592, 664, 981
PpsI GAGTC 4 cut(s) 236, 592, 664, 981
PscI ACATGT 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 3 cut(s) 40, 162, 924
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 3 cut(s) 26, 38, 301
RsaI GTAC 2 cut(s) 443, 924
RsaNI GTAC 2 cut(s) 442, 923
RseI CAYNNNNRTG 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 1219
SaqAI TTAA 5 cut(s) 402, 417, 755, 1086, 1100
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 7 cut(s) 26, 38, 128, 301, 648, 823, 950
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 4 cut(s) 237, 592, 665, 982
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 368
SetI ASST 7 cut(s) 107, 166, 438, 518, 703, 895, 1231
SfaNI GCATC 2 cut(s) 189, 273
SfcI CTRYAG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 1047
SphI GCATGC 1 cut(s) 460
Sse9I AATT 3 cut(s) 171, 322, 805
SsiI CCGC 2 cut(s) 470, 963
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 533, 926
TaaI ACNGT 5 cut(s) 446, 506, 530, 818, 1077
TaqI TCGA 3 cut(s) 491, 568, 947
TasI AATT 3 cut(s) 171, 322, 805
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 1 cut(s) 570
Tru1I TTAA 5 cut(s) 402, 417, 755, 1086, 1100
Tru9I TTAA 5 cut(s) 402, 417, 755, 1086, 1100
TscAI CASTG 1 cut(s) 533
TseFI GTSAC 2 cut(s) 10, 1194
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 2 cut(s) 10, 1194
TspDTI ATGAA 4 cut(s) 568, 718, 1070, 1086
TspRI CASTG 1 cut(s) 533
XapI RAATTY 2 cut(s) 322, 805
XceI RCATGY 2 cut(s) 460, 762
XmiI GTMKAC 1 cut(s) 636
XmnI GAANNNNTTC 2 cut(s) 908, 1077
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.