Rh2DG694900

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008943
Physical Location & Seq
Forward (+)
91086194 .. 91090328
4135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG694900.1

Sequence Viewer

Length: 1122 bp
ATGGATCATTATTCCTATCACTTGGGAATATTGATTATGGCTGTCGCTGTTGTATTCACAGTCTATGATTTAGTGCTCCTCCTGCTAACCTCTGGAAGAGATCCTGGTATAATCCCCCGTAACACACACCCCCCTGAGCCAGAAGGCCTTGATGGGAGTACAGAAAGTGGGGCAGGACAAACTCCACAGTTGCGCTTGCCTCGCATCAAAGAAGTAGAGGTGAATGGTATCTCTGTTAAGATCAAATACTGTGATACTTGTATGCTTTATAGACCCCCTCGCTGCTCCCACTGTTCAATATGCAACAACTGTGTGGAACGATTCGACCACCACTGTCCCTGGGTTGGACAGTGTATTGGGCTGAGAAATTATCGATTCTTCTTCATGTTTGTCTTCTCCACAACCCTTCTTTGTATATACGTGTTTGCATTCTGCTGGGTGTATGTTAGGAGGATCATGGGAAGCGATGACACAACAATTTGGAAAGCAATGATAAAAACTCCAGCCTCTATTGTTCTAATAGTTTACACTTTTATATCGATGTGGTTTGTTGGCGGCCTTACTGCCTTCCATTTATATCTCATCAGTACAAATCAGACTACATATGAGAATTTTCGATATCGATATGATAGGCGAGCCAATCCATATAACAAAGGAGTTGTTAACAATTTCAAGGAGATATTTTGCACCAGCATTCCTGAGTCTAAGAATGACTTCAGGGAAAAGGTGCCAAGGGAACCTGTGTTACCTCCTCGACCAGGCGGTGGCGGTTTTATGAGCCCAAATATGGGAAAAGCCGTGGACGACATAGAAATGGGAAGAAAAACTGTGTGGGGAGACATGGGTGCCGGGGGTGATCATTTTGAAGGGCAACTTAACAGCAATGATCGCCAGAGTGTAAAGGATGGGGAACTAGGTGAAGTTTCCCCAGACATGAGGACTACAGTAGACGAGACTGTGGATCGTGCTGGAATACATCCCAGGCGATCCAGTTGGGGAAGGAAAAGTGGAAGTTGGGAAATGTCGCCCGAAGTTCTTGCTTTGGCAGCTAGAGTTGGGGAACCAAACCACATGGGTGGGAGTAGCAGCAGTGGCTTGACAAATGAAAACCGACAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

373

Amino Acids

42.01

Weight (kDa)

7.56

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 80 - 206 1.8e-40 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 727, 845
AccB7I CCANNNNNTGG 1 cut(s) 764
AccI GTMKAC 1 cut(s) 948
AciI CCGC 3 cut(s) 555, 762, 768
AclWI GGATC 5 cut(s) 12, 95, 461, 969, 981
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 700
AfaI GTAC 2 cut(s) 160, 589
AfiI CCNNNNNNNGG 5 cut(s) 344, 758, 764, 787, 788
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 3 cut(s) 297, 673, 866
AjnI CCWGG 4 cut(s) 103, 338, 757, 980
AleI CACNNNNGTG 1 cut(s) 1074
AluBI AGCT 1 cut(s) 1049
AluI AGCT 1 cut(s) 1049
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 831, 947
AlwI GGATC 5 cut(s) 12, 95, 461, 969, 981
AoxI GGCC 2 cut(s) 145, 556
ApeKI GCWGC 3 cut(s) 282, 1046, 1086
ApoI RAATTY 1 cut(s) 610
Asp700I GAANNNNTTC 1 cut(s) 713
AspLEI GCGC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 232, 866, 929
BanI GGYRCC 2 cut(s) 727, 845
BanII GRGCYC 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 269, 1058, 1098
BccI CCATC 2 cut(s) 146, 899
BceAI ACGGC 1 cut(s) 782
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 4 cut(s) 105, 340, 759, 982
BclI TGATCA 1 cut(s) 856
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 831, 947
BfaI CTAG 2 cut(s) 914, 1050
BfmI CTRYAG 1 cut(s) 942
BisI GCNGC 4 cut(s) 283, 556, 1047, 1087
BlsI GCNGC 4 cut(s) 284, 557, 1048, 1088
Bme1390I CCNGG 5 cut(s) 105, 340, 759, 850, 982
BmiI GGNNCC 4 cut(s) 729, 738, 847, 1062
BmrFI CCNGG 5 cut(s) 105, 340, 759, 850, 982
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 850
Bsa29I ATCGAT 3 cut(s) 373, 539, 622
BsaAI YACGTR 1 cut(s) 421
BsaJI CCNNGG 6 cut(s) 338, 339, 731, 798, 849, 980
Bsc4I CCNNNNNNNGG 5 cut(s) 344, 758, 764, 787, 788
Bse1I ACTGG 1 cut(s) 990
Bse3DI GCAATG 2 cut(s) 495, 889
BseBI CCWGG 4 cut(s) 105, 340, 759, 982
BseCI ATCGAT 3 cut(s) 373, 539, 622
BseDI CCNNGG 6 cut(s) 338, 339, 731, 798, 849, 980
BseGI GGATG 2 cut(s) 910, 976
BseLI CCNNNNNNNGG 5 cut(s) 344, 758, 764, 787, 788
BseMI GCAATG 2 cut(s) 495, 889
BseMII CTCAG 3 cut(s) 126, 353, 690
BseNI ACTGG 1 cut(s) 990
BseRI GAGGAG 2 cut(s) 68, 741
BseXI GCAGC 3 cut(s) 269, 1058, 1098
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 2 cut(s) 147, 558
BshNI GGYRCC 2 cut(s) 727, 845
BshVI ATCGAT 3 cut(s) 373, 539, 622
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 5 cut(s) 344, 758, 764, 787, 788
BsmAI GTCTC 2 cut(s) 831, 947
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 2 cut(s) 428, 693
BsnI GGCC 2 cut(s) 147, 558
Bsp1286I GDGCHC 2 cut(s) 78, 782
Bsp143I GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
BspACI CCGC 3 cut(s) 555, 762, 768
BspANI GGCC 2 cut(s) 147, 558
BspCNI CTCAG 3 cut(s) 127, 354, 691
BspDI ATCGAT 3 cut(s) 373, 539, 622
BspLI GGNNCC 4 cut(s) 729, 738, 847, 1062
BspPI GGATC 5 cut(s) 12, 95, 461, 969, 981
BspT107I GGYRCC 2 cut(s) 727, 845
BsrDI GCAATG 2 cut(s) 495, 889
BsrI ACTGG 1 cut(s) 990
BssECI CCNNGG 6 cut(s) 338, 339, 731, 798, 849, 980
BssMI GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
BssT1I CCWWGG 1 cut(s) 731
Bst2UI CCWGG 4 cut(s) 105, 340, 759, 982
Bst6I CTCTTC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 197, 636
BstDEI CTNAG 4 cut(s) 135, 362, 699, 705
BstDSI CCRYGG 1 cut(s) 798
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 2 cut(s) 910, 976
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 8 cut(s) 7, 103, 243, 456, 859, 889, 964, 989
BstMAI GTCTC 2 cut(s) 831, 947
BstMBI GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
BstMWI GCNNNNNNNGC 5 cut(s) 82, 201, 888, 1046, 1092
BstNI CCWGG 4 cut(s) 105, 340, 759, 982
BstSCI CCNGG 5 cut(s) 103, 338, 757, 848, 980
BstSFI CTRYAG 1 cut(s) 942
BstV1I GCAGC 3 cut(s) 269, 1058, 1098
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 1076
BstYI RGATCY 1 cut(s) 100
Bsu15I ATCGAT 3 cut(s) 373, 539, 622
BsuRI GGCC 2 cut(s) 147, 558
BsuTUI ATCGAT 3 cut(s) 373, 539, 622
BtgI CCRYGG 1 cut(s) 798
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 2 cut(s) 910, 976
BtsI GCAGTG 1 cut(s) 1096
BtsIMutI CAGTG 4 cut(s) 289, 331, 356, 1096
Cac8I GCNNGC 2 cut(s) 197, 636
CfoI GCGC 1 cut(s) 195
ClaI ATCGAT 3 cut(s) 373, 539, 622
Csp6I GTAC 2 cut(s) 159, 588
CviAII CATG 5 cut(s) 385, 457, 841, 934, 1072
CviQI GTAC 2 cut(s) 159, 588
DdeI CTNAG 4 cut(s) 135, 362, 699, 705
DpnI GATC 8 cut(s) 6, 102, 242, 455, 858, 888, 963, 988
DpnII GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 731
Eco147I AGGCCT 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 782
Eco32I GATATC 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 700
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoRII CCWGG 4 cut(s) 103, 338, 757, 980
EcoRV GATATC 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 731
FaeI CATG 5 cut(s) 388, 460, 844, 937, 1075
FalI AAGNNNNNCTT 4 cut(s) 698, 730, 858, 890
FaqI GGGAC 1 cut(s) 321
FatI CATG 5 cut(s) 384, 456, 840, 933, 1071
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 1 cut(s) 948
Fnu4HI GCNGC 4 cut(s) 283, 556, 1047, 1087
FokI GGATG 2 cut(s) 917, 963
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 4 cut(s) 283, 556, 1047, 1087
FspBI CTAG 2 cut(s) 914, 1050
GlaI GCGC 1 cut(s) 194
GluI GCNGC 4 cut(s) 283, 556, 1047, 1087
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 2 cut(s) 147, 558
HapII CCGG 1 cut(s) 849
HhaI GCGC 1 cut(s) 195
Hin1II CATG 5 cut(s) 388, 460, 844, 937, 1075
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 3 cut(s) 321, 375, 701
HpaI GTTAAC 1 cut(s) 664
HpaII CCGG 1 cut(s) 849
HphI GGTGA 3 cut(s) 232, 866, 929
Hpy166II GTNNAC 4 cut(s) 526, 664, 802, 949
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 2 cut(s) 93, 698
Hpy8I GTNNAC 4 cut(s) 526, 664, 802, 949
HpyAV CCTTC 5 cut(s) 137, 416, 577, 860, 993
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 303, 428, 687
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 201, 888, 1046, 1092
HpyF3I CTNAG 4 cut(s) 135, 362, 699, 705
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 5 cut(s) 388, 460, 844, 937, 1075
HspAI GCGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 856
KspAI GTTAAC 1 cut(s) 664
Kzo9I GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
LmnI GCTCC 2 cut(s) 81, 290
Lsp1109I GCAGC 3 cut(s) 269, 1058, 1098
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 914, 1050
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 119, 744
MalI GATC 8 cut(s) 6, 102, 242, 455, 858, 888, 963, 988
MboI GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
MboII GAAGA 5 cut(s) 108, 370, 373, 385, 831
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 78, 782
MluCI AATT 4 cut(s) 367, 477, 610, 667
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 713
MseI TTAA 3 cut(s) 237, 663, 876
MslI CAYNNNNRTG 2 cut(s) 812, 1074
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 5 cut(s) 105, 340, 759, 850, 982
Mva1269I GAATGC 2 cut(s) 428, 693
MvaI CCWGG 4 cut(s) 105, 340, 759, 982
MwoI GCNNNNNNNGC 5 cut(s) 82, 201, 888, 1046, 1092
NciI CCSGG 1 cut(s) 850
NdeI CATATG 1 cut(s) 604
NdeII GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
NlaIII CATG 5 cut(s) 388, 460, 844, 937, 1075
NlaIV GGNNCC 4 cut(s) 729, 738, 847, 1062
OliI CACNNNNGTG 1 cut(s) 1074
PasI CCCWGGG 1 cut(s) 339
PceI AGGCCT 1 cut(s) 147
PctI GAATGC 2 cut(s) 428, 693
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 2 cut(s) 321, 375
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 4 cut(s) 284, 557, 1048, 1088
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 421
Psp6I CCWGG 4 cut(s) 103, 338, 757, 980
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 4 cut(s) 103, 338, 757, 980
PspN4I GGNNCC 4 cut(s) 729, 738, 847, 1062
PsrI GAACNNNNNNTAC 2 cut(s) 729, 761
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 2 cut(s) 160, 589
RsaNI GTAC 2 cut(s) 159, 588
RseI CAYNNNNRTG 2 cut(s) 812, 1074
SaqAI TTAA 3 cut(s) 237, 663, 876
SatI GCNGC 4 cut(s) 283, 556, 1047, 1087
Sau3AI GATC 8 cut(s) 4, 100, 240, 453, 856, 886, 961, 986
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 5 cut(s) 105, 340, 759, 850, 982
SduI GDGCHC 2 cut(s) 78, 782
SetI ASST 8 cut(s) 92, 222, 423, 729, 742, 751, 919, 1051
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 942
SmiMI CAYNNNNRTG 2 cut(s) 812, 1074
Sse9I AATT 4 cut(s) 367, 477, 610, 667
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 3 cut(s) 555, 762, 768
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 914, 1050
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 5 cut(s) 103, 338, 757, 848, 980
StyI CCWWGG 1 cut(s) 731
TaiI ACGT 1 cut(s) 423
TaqI TCGA 6 cut(s) 324, 373, 539, 616, 622, 754
TasI AATT 4 cut(s) 367, 477, 610, 667
TatI WGTACW 2 cut(s) 158, 587
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 2 cut(s) 321, 375
Tru1I TTAA 3 cut(s) 237, 663, 876
Tru9I TTAA 3 cut(s) 237, 663, 876
TscAI CASTG 4 cut(s) 296, 338, 356, 1096
TseI GCWGC 3 cut(s) 282, 1046, 1086
TspDTI ATGAA 2 cut(s) 373, 1119
TspRI CASTG 4 cut(s) 296, 338, 356, 1096
Van91I CCANNNNNTGG 1 cut(s) 764
XagI CCTNNNNNAGG 1 cut(s) 756
XapI RAATTY 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 948
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 2 cut(s) 914, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.