Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008943

Physical Location & Seq

Genomic Coordinates Forward (+)

26961434 .. 26965496

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTATGTGGTGCCTCCGCCCCAGCGATCGGATCCGGCTTCCGGATCCGCCGGCGCCTCCACTGATTTGCTGGTCTACCAAAATTGGAAAGGCAGCAATATATTTTTCCTTCAGGGAAGGTTTATTTTCGGACCAGATGTAAGATCACTGGGGCTGACCATATTTCTAATTGTTGCTCCTGTCACAATTTTCTGCATCTTTGTTGCAAGAAAGTTGATGGACCATTTCTCACATCACTTGGGAATATTGATAATGGTTGTCGCTGTGGTATTCACAGTTTATGATTTAGTTCTTCTCCTGCTAACCTCTGGAAGAGATCCTGGTATAATTCCCCGTAACACACACCCCCCAGAGCCAGAAGGATTTGATGGGAACGTAGAAGGTGGGGCTGGACAAACACCACAGTTGCGTTTGCCTCGCATCAAGGAAGTAGAGGTGAATGGAATCCCTGTCAAGATCAAGTATTGTGATACTTGTATGCTCTATAGACCTCCTCGCTGCTCCCACTGTTCAATATGCAACAACTGCGTAGAAAGATTCGATCACCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGAGAAATTATCGATTCTTCTTCATGTTTGTGTTCTCCACAACCCTTCTTTGTATATATGTTTTTGCATTCTGCTGGGTCTATGTTAGAAGGATCATGGGAACTGAGGACACGACAATTTGGAAAGCAATGATTAAAACTCCAGCCTCTATTGTCCTAATAGTCTACACTTTCATATCAATGTGGTTTGTTGGTGGTCTTACAGCCTTCCATTTATATCTCATCAGTACAAATCAGACTACATATGAGAATTTCCGGTACCGATATGATAGGCGAGCCAACCCCTATAACAAAGGAGTGGTTGAAAATTTCAAGGAAATATTTTGTACCACCATTCCCCAGTCCAAGAACAATTTCAGGGCGAAGGTGCCAAGGGAACCTGTGTTGCCTCCTCGGTCAGGGGGTGGAGGTTTTATGAGCCCAAATATGGGAAAAGCTGTGGAGGACATTGAAATGGGCAGAAAAACGGTGTGGGGAGACATGAATGCTGGGGGTGATCATTATGAAGGGCAACTTAACAACAATGATCGCTTGAATTTAAAGGATGGTGAATTAGGTGAAGTTTCCCCAGATATAAGGACTACAGTCGATGAAACTGTGGATCGTGCTGGAATACACCCCAGGCGATCCAGCTGGGGAAGGAAAAGTGGAAGCTGGGAAATGTCCCCCGAAGTTCTTGCTTTGGCAGCTAGAGTCGGGGAACCGAACCGCACGGGTGGGAGTAGCAGTGGTGGCTTGACAAATGAGAACCGACATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

446

Amino Acids

50.0

Weight (kDa)

8.76

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26935 AT5G41060 AT5G41060 AT5G41060 AT5G41060
fragaria_vesca	FvH4_6g53970
malus_domestica	MD09G1006700.v1.1 MD17G1010600.v1.1
prunus_persica	Prupe.3G310300_v2.0.a1
pyrus_communis	pycom111g00500 pycom17g00540
rosa_chinensis	RchiOBHm_Chr2g0176141
rosa_laevigata	RLG00000022384
rosa_multiflora	Rmu_co8474081.1_g000001 Rmu_sc0012674.1_g000004
rosa_roxburghii	Rroxscaffold_2G00076740
rosa_rugosa	Rorug02G0590900
rosa_samantha	Rh2AG669600 Rh2BG681200 Rh2CG644100 Rh2DG694900
rosa_wichuraiana	Rw2G054930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	834
AccB1I	GGYRCC	4 cut(s)	10, 53, 834, 943
AccI	GTMKAC	2 cut(s)	75, 741
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	3 cut(s)	17, 48, 1285
AclWI	GGATC	8 cut(s)	26, 39, 39, 52, 311, 677, 1185, 1197
AcsI	RAATTY	3 cut(s)	826, 883, 1111
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	3 cut(s)	805, 836, 904
AfiI	CCNNNNNNNGG	6 cut(s)	28, 41, 560, 974, 1003, 1004
AgsI	TTSAA	5 cut(s)	513, 881, 889, 1028, 1111
AjnI	CCWGG	2 cut(s)	319, 1196
AjuI	GAANNNNNNNTTGG	2 cut(s)	914, 946
AluBI	AGCT	4 cut(s)	1013, 1209, 1230, 1265
AluI	AGCT	4 cut(s)	1013, 1209, 1230, 1265
Alw26I	GTCTC	1 cut(s)	1047
AlwI	GGATC	8 cut(s)	26, 39, 39, 52, 311, 677, 1185, 1197
Aor13HI	TCCGGA	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	93, 498, 1262
ApoI	RAATTY	3 cut(s)	826, 883, 1111
Asp700I	GAANNNNTTC	1 cut(s)	929
Asp718I	GGTACC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	131, 220
AsuHPI	GGTGA	5 cut(s)	448, 536, 1082, 1136, 1145
AvaII	GGWCC	2 cut(s)	131, 220
BamHI	GGATCC	2 cut(s)	31, 44
BanI	GGYRCC	4 cut(s)	10, 53, 834, 943
BanII	GRGCYC	1 cut(s)	998
BbvI	GCAGC	3 cut(s)	105, 485, 1274
BccI	CCATC	3 cut(s)	211, 362, 1115
BcgI	CGANNNNNNTGC	2 cut(s)	1235, 1269
BciT130I	CCWGG	2 cut(s)	321, 1198
BclI	TGATCA	1 cut(s)	1072
BcoDI	GTCTC	1 cut(s)	1047
BfaI	CTAG	1 cut(s)	1266
BfmI	CTRYAG	2 cut(s)	484, 1158
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	3 cut(s)	94, 499, 1263
BlsI	GCNGC	3 cut(s)	95, 500, 1264
Bme1390I	CCNGG	2 cut(s)	321, 1198
Bme18I	GGWCC	2 cut(s)	131, 220
BmgT120I	GGNCC	2 cut(s)	131, 220
BmiI	GGNNCC	8 cut(s)	12, 33, 46, 55, 836, 945, 954, 1278
BmrFI	CCNGG	2 cut(s)	321, 1198
BmrI	ACTGGG	2 cut(s)	158, 910
BmsI	GCATC	2 cut(s)	204, 429
BmuI	ACTGGG	2 cut(s)	158, 910
BoxI	GACNNNNGTC	1 cut(s)	1160
BpmI	CTGGAG	1 cut(s)	702
Bsa29I	ATCGAT	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	554, 947, 968, 1196
BsaWI	WCCGGW	2 cut(s)	41, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	1288, 1318
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 41, 560, 974, 1003, 1004
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	153, 916
Bse3DI	GCAATG	1 cut(s)	711
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	321, 1198
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	4 cut(s)	554, 947, 968, 1196
BseGI	GGATG	1 cut(s)	1126
BseLI	CCNNNNNNNGG	6 cut(s)	28, 41, 560, 974, 1003, 1004
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	569, 672
BseNI	ACTGG	2 cut(s)	153, 916
BseRI	GAGGAG	2 cut(s)	483, 957
BseXI	GCAGC	3 cut(s)	105, 485, 1274
BseYI	CCCAGC	5 cut(s)	21, 651, 1064, 1209, 1230
Bsh1285I	CGRYCG	1 cut(s)	29
BshNI	GGYRCC	4 cut(s)	10, 53, 834, 943
BshVI	ATCGAT	1 cut(s)	589
BsiEI	CGRYCG	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	35, 42, 51, 832
BslFI	GGGAC	1 cut(s)	1225
BslI	CCNNNNNNNGG	6 cut(s)	28, 41, 560, 974, 1003, 1004
BsmAI	GTCTC	1 cut(s)	1047
BsmFI	GGGAC	1 cut(s)	1225
BsmI	GAATGC	2 cut(s)	644, 1066
Bsp1286I	GDGCHC	1 cut(s)	998
Bsp13I	TCCGGA	1 cut(s)	41
BspACI	CCGC	3 cut(s)	17, 48, 1285
BspCNI	CTCAG	2 cut(s)	570, 673
BspDI	ATCGAT	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	8 cut(s)	12, 33, 46, 55, 836, 945, 954, 1278
BspPI	GGATC	8 cut(s)	26, 39, 39, 52, 311, 677, 1185, 1197
BspT107I	GGYRCC	4 cut(s)	10, 53, 834, 943
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	153, 916
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	554, 947, 968, 1196
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	554, 947
Bst2UI	CCWGG	2 cut(s)	321, 1198
Bst4CI	ACNGT	7 cut(s)	277, 405, 509, 551, 1045, 1162, 1174
Bst6I	CTCTTC	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	52, 852
BstDEI	CTNAG	2 cut(s)	578, 681
BstENI	CCTNNNNNAGG	1 cut(s)	972
BstF5I	GGATG	1 cut(s)	1126
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstMAI	GTCTC	1 cut(s)	1047
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	525, 1262, 1308
BstNI	CCWGG	2 cut(s)	321, 1198
BstPAI	GACNNNNGTC	1 cut(s)	1160
BstSCI	CCNGG	2 cut(s)	319, 1196
BstSFI	CTRYAG	2 cut(s)	484, 1158
BstV1I	GCAGC	3 cut(s)	105, 485, 1274
BstX2I	RGATCY	3 cut(s)	31, 44, 316
BstYI	RGATCY	3 cut(s)	31, 44, 316
Bsu15I	ATCGAT	1 cut(s)	589
BsuTUI	ATCGAT	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	1126
BtsI	GCAGTG	2 cut(s)	572, 1309
BtsIMutI	CAGTG	6 cut(s)	60, 146, 505, 547, 572, 1309
Cac8I	GCNNGC	2 cut(s)	52, 852
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	131, 220
ClaI	ATCGAT	1 cut(s)	589
Csp6I	GTAC	3 cut(s)	804, 835, 903
CspCI	CAANNNNNGTGG	2 cut(s)	536, 571
CviAII	CATG	3 cut(s)	601, 673, 1057
CviQI	GTAC	3 cut(s)	804, 835, 903
DdeI	CTNAG	2 cut(s)	578, 681
DinI	GGCGCC	1 cut(s)	55
DraI	TTTAAA	1 cut(s)	1116
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
EciI	GGCGGA	2 cut(s)	6, 37
Eco130I	CCWWGG	2 cut(s)	554, 947
Eco24I	GRGCYC	1 cut(s)	998
Eco47I	GGWCC	2 cut(s)	131, 220
Eco57I	CTGAAG	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	972
EcoRII	CCWGG	2 cut(s)	319, 1196
EcoT14I	CCWWGG	2 cut(s)	554, 947
EcoT38I	GRGCYC	1 cut(s)	998
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	554, 947
FaeI	CATG	3 cut(s)	604, 676, 1060
FalI	AAGNNNNNCTT	2 cut(s)	1074, 1106
FaqI	GGGAC	1 cut(s)	1225
FatI	CATG	3 cut(s)	600, 672, 1056
FauNDI	CATATG	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	1072
FblI	GTMKAC	2 cut(s)	75, 741
Fnu4HI	GCNGC	3 cut(s)	94, 499, 1263
FokI	GGATG	1 cut(s)	1133
FriOI	GRGCYC	1 cut(s)	998
Fsp4HI	GCNGC	3 cut(s)	94, 499, 1263
FspBI	CTAG	1 cut(s)	1266
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	94, 499, 1263
GsaI	CCCAGC	5 cut(s)	25, 655, 1068, 1213, 1234
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	1 cut(s)	57
HapII	CCGG	4 cut(s)	35, 42, 51, 832
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	604, 676, 1060
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	444, 537, 591, 1269
HpaII	CCGG	4 cut(s)	35, 42, 51, 832
HphI	GGTGA	5 cut(s)	448, 536, 1082, 1136, 1145
Hpy166II	GTNNAC	2 cut(s)	76, 742
Hpy188I	TCNGA	3 cut(s)	31, 131, 813
Hpy188III	TCNNGA	3 cut(s)	42, 309, 454
Hpy8I	GTNNAC	2 cut(s)	76, 742
HpyCH4III	ACNGT	7 cut(s)	277, 405, 509, 551, 1045, 1162, 1174
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	195, 206, 519, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	525, 1262, 1308
HpyF3I	CTNAG	2 cut(s)	578, 681
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	604, 676, 1060
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	838
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	1072
LmnI	GCTCC	2 cut(s)	181, 506
Lsp1109I	GCAGC	3 cut(s)	105, 485, 1274
LweI	GCATC	2 cut(s)	204, 429
MaeI	CTAG	1 cut(s)	1266
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	181, 335
MboII	GAAGA	4 cut(s)	284, 324, 586, 589
MflI	RGATCY	3 cut(s)	31, 44, 316
MhlI	GDGCHC	1 cut(s)	998
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	1278
MreI	CGCCGGCG	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	3 cut(s)	711, 1092, 1115
MslI	CAYNNNNRTG	3 cut(s)	605, 755, 1028
MspA1I	CMGCKG	1 cut(s)	1209
MspI	CCGG	4 cut(s)	35, 42, 51, 832
MspR9I	CCNGG	2 cut(s)	321, 1198
Mva1269I	GAATGC	2 cut(s)	644, 1066
MvaI	CCWGG	2 cut(s)	321, 1198
MwoI	GCNNNNNNNGC	3 cut(s)	525, 1262, 1308
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	54
NdeI	CATATG	1 cut(s)	820
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	604, 676, 1060
NlaIV	GGNNCC	8 cut(s)	12, 33, 46, 55, 836, 945, 954, 1278
NmuCI	GTSAC	1 cut(s)	181
PctI	GAATGC	2 cut(s)	644, 1066
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	3 cut(s)	444, 537, 591
PkrI	GCNGC	3 cut(s)	95, 500, 1264
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	1277
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	1277
PshAI	GACNNNNGTC	1 cut(s)	1160
Psp6I	CCWGG	2 cut(s)	319, 1196
PspFI	CCCAGC	5 cut(s)	21, 651, 1064, 1209, 1230
PspGI	CCWGG	2 cut(s)	319, 1196
PspN4I	GGNNCC	8 cut(s)	12, 33, 46, 55, 836, 945, 954, 1278
PspPI	GGNCC	2 cut(s)	131, 220
PsuI	RGATCY	3 cut(s)	31, 44, 316
PvuI	CGATCG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	1209
RsaI	GTAC	3 cut(s)	805, 836, 904
RsaNI	GTAC	3 cut(s)	804, 835, 903
RseI	CAYNNNNRTG	3 cut(s)	605, 755, 1028
SaqAI	TTAA	3 cut(s)	711, 1092, 1115
SatI	GCNGC	3 cut(s)	94, 499, 1263
Sau96I	GGNCC	2 cut(s)	131, 220
SchI	GAGTC	1 cut(s)	1278
ScrFI	CCNGG	2 cut(s)	321, 1198
SduI	GDGCHC	1 cut(s)	998
SfaNI	GCATC	2 cut(s)	204, 429
SfcI	CTRYAG	2 cut(s)	484, 1158
SfoI	GGCGCC	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	131, 220
SmiMI	CAYNNNNRTG	3 cut(s)	605, 755, 1028
SsiI	CCGC	3 cut(s)	17, 48, 1285
SspDI	GGCGCC	1 cut(s)	53
SspI	AATATT	2 cut(s)	246, 897
SspMI	CTAG	1 cut(s)	1266
StyD4I	CCNGG	2 cut(s)	319, 1196
StyI	CCWWGG	2 cut(s)	554, 947
TaaI	ACNGT	7 cut(s)	277, 405, 509, 551, 1045, 1162, 1174
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	3 cut(s)	540, 589, 1164
TaqII	GACCGA	1 cut(s)	960
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	3 cut(s)	444, 537, 591
Tru1I	TTAA	3 cut(s)	711, 1092, 1115
Tru9I	TTAA	3 cut(s)	711, 1092, 1115
TscAI	CASTG	6 cut(s)	67, 153, 512, 554, 572, 1309
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	93, 498, 1262
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	589, 739, 1073, 1095, 1182
TspRI	CASTG	6 cut(s)	67, 153, 512, 554, 572, 1309
VpaK11BI	GGWCC	2 cut(s)	131, 220
XagI	CCTNNNNNAGG	1 cut(s)	972
XapI	RAATTY	3 cut(s)	826, 883, 1111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	75, 741
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	1 cut(s)	1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.