Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012674.1

Orthogroup ID

OG0008943

Physical Location & Seq

Genomic Coordinates Forward (+)

12902 .. 15782

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012674.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgtacgtggtgcctccgcctcagcgatcggatccggctcccggatccggcttcactgattcccgggtctaccaaatttggaaaggcagcaatatattttttctccaggggagatttatctttggaccagatgtaagatccttgggcctcaccatacttctaattcttgctcctatcactattttctgcgtctttgttgccagaaggttgatggatcattattcctatcacttgggaatattgattatggctgtcgctgttgtattcacagtctatgatttagtgctcctcctgctaacctctggaagagatcctggtataatcccccgtaacacacacccccctgagccagaaggccttgatgggagtacagaaagtggggcaggacaaactccacagttgcgcttgccgcgcatcaaagaagtagaggtgaatggtatctctgttaagatcaaatactgtgatacttgtatgctttatagaccccctcgctgctcccactgttcaatatgcaacaactgtgtggaacgattcgaccaccactgtccctgggttggacagtgtattgggctgagaaattatcgattcttcttcatgtttgtcttctccacaacccttctttgtatatacgtgtttgcattctgctgggtgtatgttaggaggatcatgggaagcgatgacacaacaatttggaaagcaatgatgaaaactccagcctctattgttctaatagtttacacttttatatcgatgtggtttgttggcggccttactgccttccatttatatctcatcagtacaaatcagactacatatgagaattttcgatatcgatatgataggcgagccaatccatataacaaaggagttgttaacaatttcaaggagatattttgcaccagcattcctgagtctaagaatgacttcagggaaaaggtgccaagggaacctgtgttacctcctcgaccaggcggtggcggttttatgagcccaaatatgggaaaagccgtggacgacatagaaatgggaagaaaaactgtgtggggagacatgggtgccgggggtgatcattttgaagggcaacttaacagcaatgatcgccagaatgtaaaggatggggaactaggtgaagtttccccagacatgaggactacagtagacgagactgtggatcgtgctggaatacatcccaggcgatccagttggggaaggaaaagtggaagttgggaaatgtcgcccgaagttcttgctttggcagctagagttggggaaccaaaccacatgggtgggagtagcagcagtggcttgacaaatgaaaaccgacagacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

443

Amino Acids

49.9

Weight (kDa)

8.53

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26935 AT5G41060 AT5G41060 AT5G41060 AT5G41060
fragaria_vesca	FvH4_6g53970
malus_domestica	MD09G1006700.v1.1 MD17G1010600.v1.1
prunus_persica	Prupe.3G310300_v2.0.a1
pyrus_communis	pycom111g00500 pycom17g00540
rosa_chinensis	RchiOBHm_Chr2g0176141
rosa_laevigata	RLG00000022384
rosa_multiflora	Rmu_co8474081.1_g000001 Rmu_sc0012674.1_g000004
rosa_roxburghii	Rroxscaffold_2G00076740
rosa_rugosa	Rorug02G0590900
rosa_samantha	Rh2AG669600 Rh2BG681200 Rh2CG644100 Rh2DG694900
rosa_wichuraiana	Rw2G054930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	10, 937, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccI	GTMKAC	2 cut(s)	69, 1158
AccII	CGCG	1 cut(s)	412
AciI	CCGC	5 cut(s)	17, 410, 765, 972, 978
AcsI	RAATTY	2 cut(s)	75, 820
AcuI	CTGAAG	1 cut(s)	910
AfaI	GTAC	3 cut(s)	5, 370, 799
AfiI	CCNNNNNNNGG	7 cut(s)	41, 47, 554, 968, 974, 997, 998
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	507, 883, 1076
AjnI	CCWGG	5 cut(s)	105, 313, 548, 967, 1190
AleI	CACNNNNGTG	1 cut(s)	1284
AluBI	AGCT	1 cut(s)	1259
AluI	AGCT	1 cut(s)	1259
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	1041, 1157
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	145, 355, 766
ApeKI	GCWGC	4 cut(s)	87, 492, 1256, 1296
ApoI	RAATTY	2 cut(s)	75, 820
Asp700I	GAANNNNTTC	1 cut(s)	923
AspLEI	GCGC	2 cut(s)	405, 414
AspS9I	GGNCC	2 cut(s)	125, 145
AsuC2I	CCSGG	4 cut(s)	42, 64, 65, 1060
AsuHPI	GGTGA	4 cut(s)	142, 442, 1076, 1139
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	2 cut(s)	31, 44
BanI	GGYRCC	3 cut(s)	10, 937, 1055
BanII	GRGCYC	1 cut(s)	992
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	99, 479, 1268, 1308
BccI	CCATC	3 cut(s)	205, 356, 1109
BceAI	ACGGC	1 cut(s)	992
BcgI	CGANNNNNNTGC	2 cut(s)	1229, 1263
BciT130I	CCWGG	5 cut(s)	107, 315, 550, 969, 1192
BclI	TGATCA	1 cut(s)	1066
BcnI	CCSGG	4 cut(s)	42, 64, 65, 1060
BcoDI	GTCTC	2 cut(s)	1041, 1157
BfaI	CTAG	2 cut(s)	1124, 1260
BfmI	CTRYAG	1 cut(s)	1152
BisI	GCNGC	6 cut(s)	88, 410, 493, 766, 1257, 1297
BlsI	GCNGC	6 cut(s)	89, 411, 494, 767, 1258, 1298
Bme1390I	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 550, 969, 1060, 1192
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	125, 145
BmiI	GGNNCC	8 cut(s)	12, 33, 39, 46, 939, 948, 1057, 1272
BmrFI	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 550, 969, 1060, 1192
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	595
BpmI	CTGGAG	2 cut(s)	89, 696
Bpu10I	CCTNAGC	2 cut(s)	21, 345
BpuMI	CCSGG	4 cut(s)	42, 64, 65, 1060
Bsa29I	ATCGAT	3 cut(s)	583, 749, 832
BsaAI	YACGTR	2 cut(s)	7, 631
BsaJI	CCNNGG	9 cut(s)	63, 106, 141, 548, 549, 941, 1008, 1059, 1190
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 47, 554, 968, 974, 997, 998
Bse1I	ACTGG	1 cut(s)	1200
Bse3DI	GCAATG	2 cut(s)	705, 1099
BseBI	CCWGG	5 cut(s)	107, 315, 550, 969, 1192
BseCI	ATCGAT	3 cut(s)	583, 749, 832
BseDI	CCNNGG	9 cut(s)	63, 106, 141, 548, 549, 941, 1008, 1059, 1190
BseGI	GGATG	2 cut(s)	1120, 1186
BseLI	CCNNNNNNNGG	7 cut(s)	41, 47, 554, 968, 974, 997, 998
BseMI	GCAATG	2 cut(s)	705, 1099
BseMII	CTCAG	4 cut(s)	35, 336, 563, 900
BseNI	ACTGG	1 cut(s)	1200
BseRI	GAGGAG	2 cut(s)	278, 951
BseXI	GCAGC	4 cut(s)	99, 479, 1268, 1308
BseYI	CCCAGC	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	412
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	147, 357, 768
BshNI	GGYRCC	3 cut(s)	10, 937, 1055
BshVI	ATCGAT	3 cut(s)	583, 749, 832
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	5 cut(s)	35, 42, 48, 64, 1059
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	7 cut(s)	41, 47, 554, 968, 974, 997, 998
BsmAI	GTCTC	2 cut(s)	1041, 1157
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	2 cut(s)	638, 903
BsnI	GGCC	3 cut(s)	147, 357, 768
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	288, 992
BspACI	CCGC	5 cut(s)	17, 410, 765, 972, 978
BspANI	GGCC	3 cut(s)	147, 357, 768
BspCNI	CTCAG	4 cut(s)	34, 337, 564, 901
BspDI	ATCGAT	3 cut(s)	583, 749, 832
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	8 cut(s)	12, 33, 39, 46, 939, 948, 1057, 1272
BspT107I	GGYRCC	3 cut(s)	10, 937, 1055
BsrDI	GCAATG	2 cut(s)	705, 1099
BsrI	ACTGG	1 cut(s)	1200
BssECI	CCNNGG	9 cut(s)	63, 106, 141, 548, 549, 941, 1008, 1059, 1190
BssT1I	CCWWGG	2 cut(s)	141, 941
Bst2UI	CCWGG	5 cut(s)	107, 315, 550, 969, 1192
Bst6I	CTCTTC	1 cut(s)	301
BstBAI	YACGTR	2 cut(s)	7, 631
BstC8I	GCNNGC	2 cut(s)	407, 846
BstDEI	CTNAG	5 cut(s)	21, 345, 572, 909, 915
BstDSI	CCRYGG	1 cut(s)	1008
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	2 cut(s)	1120, 1186
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	405, 414
BstMAI	GTCTC	2 cut(s)	1041, 1157
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	6 cut(s)	292, 409, 411, 1098, 1256, 1302
BstNI	CCWGG	5 cut(s)	107, 315, 550, 969, 1192
BstSCI	CCNGG	9 cut(s)	40, 62, 63, 105, 313, 548, 967, 1058, 1190
BstSFI	CTRYAG	1 cut(s)	1152
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	4 cut(s)	99, 479, 1268, 1308
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	4 cut(s)	31, 44, 137, 310
BstXI	CCANNNNNNTGG	1 cut(s)	1286
BstYI	RGATCY	4 cut(s)	31, 44, 137, 310
Bsu15I	ATCGAT	3 cut(s)	583, 749, 832
BsuRI	GGCC	3 cut(s)	147, 357, 768
BsuTUI	ATCGAT	3 cut(s)	583, 749, 832
BtgI	CCRYGG	1 cut(s)	1008
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	1120, 1186
BtsI	GCAGTG	1 cut(s)	1306
BtsIMutI	CAGTG	5 cut(s)	54, 499, 541, 566, 1306
Cac8I	GCNNGC	2 cut(s)	407, 846
CfoI	GCGC	2 cut(s)	405, 414
Cfr13I	GGNCC	2 cut(s)	125, 145
Cfr9I	CCCGGG	1 cut(s)	63
ClaI	ATCGAT	3 cut(s)	583, 749, 832
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	4, 369, 798
CviAII	CATG	5 cut(s)	595, 667, 1051, 1144, 1282
CviQI	GTAC	3 cut(s)	4, 369, 798
DdeI	CTNAG	5 cut(s)	21, 345, 572, 909, 915
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	141, 941
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	992
Eco32I	GATATC	1 cut(s)	830
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	910
Eco88I	CYCGRG	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRII	CCWGG	5 cut(s)	105, 313, 548, 967, 1190
EcoRV	GATATC	1 cut(s)	830
EcoT14I	CCWWGG	2 cut(s)	141, 941
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	2 cut(s)	141, 941
FaeI	CATG	5 cut(s)	598, 670, 1054, 1147, 1285
FalI	AAGNNNNNCTT	4 cut(s)	908, 940, 1068, 1100
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	5 cut(s)	594, 666, 1050, 1143, 1281
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	1066
FblI	GTMKAC	2 cut(s)	69, 1158
Fnu4HI	GCNGC	6 cut(s)	88, 410, 493, 766, 1257, 1297
FokI	GGATG	2 cut(s)	1127, 1173
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	6 cut(s)	88, 410, 493, 766, 1257, 1297
FspBI	CTAG	2 cut(s)	1124, 1260
GlaI	GCGC	2 cut(s)	404, 413
GluI	GCNGC	6 cut(s)	88, 410, 493, 766, 1257, 1297
GsaI	CCCAGC	1 cut(s)	649
GsuI	CTGGAG	2 cut(s)	89, 696
HaeIII	GGCC	3 cut(s)	147, 357, 768
HapII	CCGG	5 cut(s)	35, 42, 48, 64, 1059
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	2 cut(s)	405, 414
Hin1II	CATG	5 cut(s)	598, 670, 1054, 1147, 1285
Hin6I	GCGC	2 cut(s)	403, 412
HinP1I	GCGC	2 cut(s)	403, 412
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	4 cut(s)	59, 531, 585, 911
HpaI	GTTAAC	1 cut(s)	874
HpaII	CCGG	5 cut(s)	35, 42, 48, 64, 1059
HphI	GGTGA	4 cut(s)	142, 442, 1076, 1139
Hpy166II	GTNNAC	5 cut(s)	70, 736, 874, 1012, 1159
Hpy188I	TCNGA	2 cut(s)	31, 807
Hpy188III	TCNNGA	2 cut(s)	303, 908
Hpy8I	GTNNAC	5 cut(s)	70, 736, 874, 1012, 1159
HpyAV	CCTTC	6 cut(s)	198, 347, 626, 787, 1070, 1203
HpyCH4IV	ACGT	2 cut(s)	6, 630
HpyCH4V	TGCA	3 cut(s)	513, 638, 897
HpyF10VI	GCNNNNNNNGC	6 cut(s)	292, 409, 411, 1098, 1256, 1302
HpyF3I	CTNAG	5 cut(s)	21, 345, 572, 909, 915
HpySE526I	ACGT	2 cut(s)	6, 630
Hsp92II	CATG	5 cut(s)	598, 670, 1054, 1147, 1285
HspAI	GCGC	2 cut(s)	403, 412
Ksp22I	TGATCA	1 cut(s)	1066
KspAI	GTTAAC	1 cut(s)	874
LmnI	GCTCC	4 cut(s)	43, 175, 291, 500
Lsp1109I	GCAGC	4 cut(s)	99, 479, 1268, 1308
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	1124, 1260
MaeII	ACGT	2 cut(s)	6, 630
MaeIII	GTNAC	2 cut(s)	329, 954
MboII	GAAGA	5 cut(s)	318, 580, 583, 595, 1041
MflI	RGATCY	4 cut(s)	31, 44, 137, 310
MhlI	GDGCHC	2 cut(s)	288, 992
MluCI	AATT	6 cut(s)	75, 162, 577, 687, 820, 877
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	923
MseI	TTAA	3 cut(s)	447, 873, 1086
MslI	CAYNNNNRTG	2 cut(s)	1022, 1284
MspI	CCGG	5 cut(s)	35, 42, 48, 64, 1059
MspR9I	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 550, 969, 1060, 1192
Mva1269I	GAATGC	2 cut(s)	638, 903
MvaI	CCWGG	5 cut(s)	107, 315, 550, 969, 1192
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	6 cut(s)	292, 409, 411, 1098, 1256, 1302
NciI	CCSGG	4 cut(s)	42, 64, 65, 1060
NdeI	CATATG	1 cut(s)	814
NlaIII	CATG	5 cut(s)	598, 670, 1054, 1147, 1285
NlaIV	GGNNCC	8 cut(s)	12, 33, 39, 46, 939, 948, 1057, 1272
OliI	CACNNNNGTG	1 cut(s)	1284
PasI	CCCWGGG	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	357
PctI	GAATGC	2 cut(s)	638, 903
PdmI	GAANNNNTTC	1 cut(s)	923
PfeI	GAWTC	3 cut(s)	59, 531, 585
PflMI	CCANNNNNTGG	1 cut(s)	974
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	6 cut(s)	89, 411, 494, 767, 1258, 1298
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
Ppu21I	YACGTR	2 cut(s)	7, 631
Psp6I	CCWGG	5 cut(s)	105, 313, 548, 967, 1190
PspFI	CCCAGC	1 cut(s)	645
PspGI	CCWGG	5 cut(s)	105, 313, 548, 967, 1190
PspN4I	GGNNCC	8 cut(s)	12, 33, 39, 46, 939, 948, 1057, 1272
PspPI	GGNCC	2 cut(s)	125, 145
PsrI	GAACNNNNNNTAC	2 cut(s)	939, 971
PsuI	RGATCY	4 cut(s)	31, 44, 137, 310
PvuI	CGATCG	1 cut(s)	29
RsaI	GTAC	3 cut(s)	5, 370, 799
RsaNI	GTAC	3 cut(s)	4, 369, 798
RseI	CAYNNNNRTG	2 cut(s)	1022, 1284
SaqAI	TTAA	3 cut(s)	447, 873, 1086
SatI	GCNGC	6 cut(s)	88, 410, 493, 766, 1257, 1297
Sau96I	GGNCC	2 cut(s)	125, 145
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 550, 969, 1060, 1192
SduI	GDGCHC	2 cut(s)	288, 992
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	1152
SinI	GGWCC	1 cut(s)	125
SmaI	CCCGGG	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	1022, 1284
Sse9I	AATT	6 cut(s)	75, 162, 577, 687, 820, 877
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	5 cut(s)	17, 410, 765, 972, 978
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	2 cut(s)	1124, 1260
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	9 cut(s)	40, 62, 63, 105, 313, 548, 967, 1058, 1190
StyI	CCWWGG	2 cut(s)	141, 941
TaiI	ACGT	2 cut(s)	9, 633
TaqI	TCGA	6 cut(s)	534, 583, 749, 826, 832, 964
TasI	AATT	6 cut(s)	75, 162, 577, 687, 820, 877
TatI	WGTACW	2 cut(s)	368, 797
TauI	GCSGC	2 cut(s)	412, 768
TfiI	GAWTC	3 cut(s)	59, 531, 585
Tru1I	TTAA	3 cut(s)	447, 873, 1086
Tru9I	TTAA	3 cut(s)	447, 873, 1086
TscAI	CASTG	5 cut(s)	61, 506, 548, 566, 1306
TseI	GCWGC	4 cut(s)	87, 492, 1256, 1296
TspDTI	ATGAA	3 cut(s)	583, 719, 1329
TspMI	CCCGGG	1 cut(s)	63
TspRI	CASTG	5 cut(s)	61, 506, 548, 566, 1306
Van91I	CCANNNNNTGG	1 cut(s)	974
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	2 cut(s)	75, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	63
XmiI	GTMKAC	2 cut(s)	69, 1158
XmnI	GAANNNNTTC	1 cut(s)	923
XspI	CTAG	2 cut(s)	1124, 1260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.