FvH4_6g53970

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008943
Physical Location & Seq
Forward (+)
39476976 .. 39480675
3700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53970.t1

Sequence Viewer

Length: 1332 bp
ATGTACGTGGTGCCTCCGCCGCAGCGATCGGATCCGGGCGCCGGATCCGCCTCCGGTGATTCCCGGGTCTATCAAACTTGGAAAGGCAGCAATATATTCTTTCTCCAGGGGAGATTTATATTTGGACCGGATGTAAGATCGTTGGGGCTGACCATACTTCTAATTGTTGCTCCGGTCACTATTTTCTGCGTCTTTGTTGCCAGAAGGTTGATGGACCATTATTCAGATCACTTGGGAGAATTGATAATGGCTGTCGCTGTTGTATTCACAGTTTATGATTTAATGCTTCTCCTGCTTACCTCTGGAAGAGATCCTGGTATAATTCCCCGTAACACACACCCTCCAGAGCCAGAAGGCTTTGATGGGAGTACAGAAAGTGGGGCTGGGCAAACTCCACAGTTACGCTTGCCTCGTATCAAAGAAGTAGAGGTGAACGGTATCCCCGTTAAGATCAAATACTGTGATACTTGTATGCTTTATAGACCCCCTCGCTGCTCCCACTGTTCAATATGCAACAACTGTGTGGAACGATTCGACCATCACTGTCCCTGGGTTGGGCAGTGTATCGGGCTGAGAAATTACCGTTTCTTCTTCATGTTTGTCTTCTCCACGACCCTTCTTTGTATATACGTGTTTGCATTCTGCTGGGTATATGTTCGGAGGATCATGGGAAGCGAGGACACAACAATTTGGAGAGCAATGATAAAAACTCCAGCGTCTATTGTTCTGATAGTGTACACTTTCATATCGATGTGGTTTGTTGGCGGCCTTACTGCCTTCCATTTATATCTCATCAGTACAAATCAGACTACATACGAGAATTTTCGATATCGATATGATAGGCGAGCCAATCCATATAACAAAGGAGTTGCTGACAATTTCAAGGAGATATTTTGCACCAGTATTCCTGAATCTAAGAATGACTTCAGGGAAAAGGTGCCAAGGGAACCTGTATTACCTCCCCGACCAGGTGGTGGTGGTTTTATGAGCCCAAATATGGGAAAAGCTGTGGACGACATAGAAATGGGAAGAAAAACGGTGTGGGGAGACATGGGTGCTGGGGGTGATCATTTTGAAGGGCAACTTAACAACAATGAACGCCAGAATGTTAAGGAGGGGGAACTAGGGGAAGTTTCCCCAGACATAAGGACTACAGTAGACGAGACTGTGGATCGTGCTGGAATACATCCCAGGCGATCCAGTTGGGGAAGGAAAAGTGGAAGTTGGGAGATGTCACCAGAAGTTCTTGCTTTGGCAGCTAGAGTTGGGGAACCAAACCGCATGGGTGGGAGTAGCAGCAGTGGCTTGACAAATGAAAACCGACAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

444

Amino Acids

49.82

Weight (kDa)

8.21

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 151 - 276 9.1e-41 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 10, 38, 937
AccB7I CCANNNNNTGG 1 cut(s) 974
AccI GTMKAC 1 cut(s) 1158
AciI CCGC 5 cut(s) 17, 20, 48, 765, 1279
AclWI GGATC 8 cut(s) 26, 39, 39, 52, 305, 671, 1179, 1191
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 910
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 4 cut(s) 5, 370, 737, 799
AfiI CCNNNNNNNGG 7 cut(s) 41, 554, 555, 968, 974, 997, 998
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 507, 883, 1076
AjnI CCWGG 5 cut(s) 105, 313, 548, 967, 1190
AluBI AGCT 2 cut(s) 1007, 1259
AluI AGCT 2 cut(s) 1007, 1259
Alw26I GTCTC 2 cut(s) 1041, 1157
AlwI GGATC 8 cut(s) 26, 39, 39, 52, 305, 671, 1179, 1191
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 766
ApeKI GCWGC 5 cut(s) 22, 87, 492, 1256, 1296
ApoI RAATTY 1 cut(s) 820
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 125, 214
AsuC2I CCSGG 3 cut(s) 36, 64, 65
AsuHPI GGTGA 4 cut(s) 68, 442, 1076, 1227
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 125, 214
BamHI GGATCC 2 cut(s) 31, 44
BanI GGYRCC 3 cut(s) 10, 38, 937
BanII GRGCYC 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 595
BbvI GCAGC 5 cut(s) 34, 99, 479, 1268, 1308
BccI CCATC 3 cut(s) 205, 356, 546
BciT130I CCWGG 5 cut(s) 107, 315, 550, 969, 1192
BciVI GTATCC 1 cut(s) 449
BclI TGATCA 1 cut(s) 1066
BcnI CCSGG 3 cut(s) 36, 64, 65
BcoDI GTCTC 2 cut(s) 1041, 1157
BfaI CTAG 2 cut(s) 1124, 1260
BfmI CTRYAG 1 cut(s) 1152
BfoI RGCGCY 1 cut(s) 42
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 7 cut(s) 20, 23, 88, 493, 766, 1257, 1297
BlsI GCNGC 7 cut(s) 21, 24, 89, 494, 767, 1258, 1298
Bme1390I CCNGG 8 cut(s) 36, 64, 65, 107, 315, 550, 969, 1192
Bme18I GGWCC 2 cut(s) 125, 214
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 125, 214
BmiI GGNNCC 7 cut(s) 12, 33, 40, 46, 939, 948, 1272
BmrFI CCNGG 8 cut(s) 36, 64, 65, 107, 315, 550, 969, 1192
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 3 cut(s) 89, 327, 696
BpuMI CCSGG 3 cut(s) 36, 64, 65
Bsa29I ATCGAT 2 cut(s) 749, 832
BsaAI YACGTR 2 cut(s) 7, 631
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 6 cut(s) 63, 106, 548, 549, 941, 1190
BsaWI WCCGGW 3 cut(s) 53, 127, 172
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 7 cut(s) 41, 554, 555, 968, 974, 997, 998
Bse1I ACTGG 2 cut(s) 900, 1200
Bse3DI GCAATG 1 cut(s) 705
BseBI CCWGG 5 cut(s) 107, 315, 550, 969, 1192
BseCI ATCGAT 2 cut(s) 749, 832
BseDI CCNNGG 6 cut(s) 63, 106, 548, 549, 941, 1190
BseGI GGATG 2 cut(s) 136, 1186
BseLI CCNNNNNNNGG 7 cut(s) 41, 554, 555, 968, 974, 997, 998
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 900, 1200
BseXI GCAGC 5 cut(s) 34, 99, 479, 1268, 1308
BseYI CCCAGC 3 cut(s) 383, 645, 1058
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 768
BshNI GGYRCC 3 cut(s) 10, 38, 937
BshVI ATCGAT 2 cut(s) 749, 832
BsiEI CGRYCG 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 6 cut(s) 35, 42, 54, 64, 128, 173
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 7 cut(s) 41, 554, 555, 968, 974, 997, 998
BsmAI GTCTC 2 cut(s) 1041, 1157
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 1 cut(s) 768
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 992
Bsp1407I TGTACA 1 cut(s) 735
BspACI CCGC 5 cut(s) 17, 20, 48, 765, 1279
BspANI GGCC 1 cut(s) 768
BspCNI CTCAG 1 cut(s) 564
BspDI ATCGAT 2 cut(s) 749, 832
BspLI GGNNCC 7 cut(s) 12, 33, 40, 46, 939, 948, 1272
BspPI GGATC 8 cut(s) 26, 39, 39, 52, 305, 671, 1179, 1191
BspT107I GGYRCC 3 cut(s) 10, 38, 937
BsrDI GCAATG 1 cut(s) 705
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 2 cut(s) 900, 1200
BssECI CCNNGG 6 cut(s) 63, 106, 548, 549, 941, 1190
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 941
Bst2UI CCWGG 5 cut(s) 107, 315, 550, 969, 1192
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 735
BstBAI YACGTR 2 cut(s) 7, 631
BstC8I GCNNGC 2 cut(s) 407, 846
BstDEI CTNAG 2 cut(s) 572, 915
BstF5I GGATG 2 cut(s) 136, 1186
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstMAI GTCTC 2 cut(s) 1041, 1157
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 5 cut(s) 19, 47, 292, 1256, 1302
BstNI CCWGG 5 cut(s) 107, 315, 550, 969, 1192
BstSCI CCNGG 8 cut(s) 34, 62, 63, 105, 313, 548, 967, 1190
BstSFI CTRYAG 1 cut(s) 1152
BstV1I GCAGC 5 cut(s) 34, 99, 479, 1268, 1308
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 3 cut(s) 31, 44, 310
BstYI RGATCY 3 cut(s) 31, 44, 310
Bsu15I ATCGAT 2 cut(s) 749, 832
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 1 cut(s) 768
BsuTUI ATCGAT 2 cut(s) 749, 832
BtsCI GGATG 2 cut(s) 136, 1186
BtsI GCAGTG 2 cut(s) 566, 1306
BtsIMutI CAGTG 4 cut(s) 499, 541, 566, 1306
Cac8I GCNNGC 2 cut(s) 407, 846
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 125, 214
Cfr9I CCCGGG 1 cut(s) 63
ClaI ATCGAT 2 cut(s) 749, 832
CseI GACGC 2 cut(s) 178, 705
CsiI ACCWGGT 1 cut(s) 967
Csp6I GTAC 4 cut(s) 4, 369, 736, 798
CviAII CATG 4 cut(s) 595, 667, 1051, 1282
CviQI GTAC 4 cut(s) 4, 369, 736, 798
DdeI CTNAG 2 cut(s) 572, 915
DinI GGCGCC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EciI GGCGGA 2 cut(s) 6, 37
Eco130I CCWWGG 1 cut(s) 941
Eco24I GRGCYC 1 cut(s) 992
Eco32I GATATC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 125, 214
Eco57I CTGAAG 1 cut(s) 910
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 5 cut(s) 105, 313, 548, 967, 1190
EcoRV GATATC 1 cut(s) 830
EcoT14I CCWWGG 1 cut(s) 941
EcoT38I GRGCYC 1 cut(s) 992
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 4 cut(s) 598, 670, 1054, 1285
FalI AAGNNNNNCTT 4 cut(s) 908, 940, 1068, 1100
FaqI GGGAC 1 cut(s) 531
FatI CATG 4 cut(s) 594, 666, 1050, 1281
FbaI TGATCA 1 cut(s) 1066
FblI GTMKAC 1 cut(s) 1158
Fnu4HI GCNGC 7 cut(s) 20, 23, 88, 493, 766, 1257, 1297
FokI GGATG 2 cut(s) 143, 1173
FriOI GRGCYC 1 cut(s) 992
Fsp4HI GCNGC 7 cut(s) 20, 23, 88, 493, 766, 1257, 1297
FspBI CTAG 2 cut(s) 1124, 1260
GlaI GCGC 1 cut(s) 40
GluI GCNGC 7 cut(s) 20, 23, 88, 493, 766, 1257, 1297
GsaI CCCAGC 3 cut(s) 387, 649, 1062
GsuI CTGGAG 3 cut(s) 89, 327, 696
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 768
HapII CCGG 6 cut(s) 35, 42, 54, 64, 128, 173
HgaI GACGC 2 cut(s) 178, 705
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 598, 670, 1054, 1285
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 3 cut(s) 59, 531, 911
HpaII CCGG 6 cut(s) 35, 42, 54, 64, 128, 173
HphI GGTGA 4 cut(s) 68, 442, 1076, 1227
Hpy166II GTNNAC 5 cut(s) 433, 736, 738, 1012, 1159
Hpy188I TCNGA 5 cut(s) 31, 226, 660, 729, 807
Hpy188III TCNNGA 3 cut(s) 303, 344, 908
Hpy8I GTNNAC 5 cut(s) 433, 736, 738, 1012, 1159
HpyAV CCTTC 6 cut(s) 198, 347, 626, 787, 1070, 1203
HpyCH4IV ACGT 2 cut(s) 6, 630
HpyCH4V TGCA 3 cut(s) 513, 638, 897
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 47, 292, 1256, 1302
HpyF3I CTNAG 2 cut(s) 572, 915
HpySE526I ACGT 2 cut(s) 6, 630
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 598, 670, 1054, 1285
HspAI GCGC 1 cut(s) 39
KasI GGCGCC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 1066
LmnI GCTCC 2 cut(s) 175, 500
Lsp1109I GCAGC 5 cut(s) 34, 99, 479, 1268, 1308
MabI ACCWGGT 1 cut(s) 967
MaeI CTAG 2 cut(s) 1124, 1260
MaeII ACGT 2 cut(s) 6, 630
MaeIII GTNAC 4 cut(s) 175, 329, 399, 1233
MboII GAAGA 5 cut(s) 318, 580, 583, 595, 1041
MflI RGATCY 3 cut(s) 31, 44, 310
MhlI GDGCHC 1 cut(s) 992
MluCI AATT 7 cut(s) 162, 239, 321, 577, 687, 820, 877
Mly113I GGCGCC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 4 cut(s) 281, 447, 1086, 1110
MslI CAYNNNNRTG 2 cut(s) 749, 1022
MspI CCGG 6 cut(s) 35, 42, 54, 64, 128, 173
MspR9I CCNGG 8 cut(s) 36, 64, 65, 107, 315, 550, 969, 1192
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 5 cut(s) 107, 315, 550, 969, 1192
MwoI GCNNNNNNNGC 5 cut(s) 19, 47, 292, 1256, 1302
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 3 cut(s) 36, 64, 65
NlaIII CATG 4 cut(s) 598, 670, 1054, 1285
NlaIV GGNNCC 7 cut(s) 12, 33, 40, 46, 939, 948, 1272
NmuCI GTSAC 2 cut(s) 175, 1233
PasI CCCWGGG 1 cut(s) 549
PcsI WCGNNNNNNNCGW 2 cut(s) 409, 441
PctI GAATGC 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 3 cut(s) 59, 531, 911
PflMI CCANNNNNTGG 1 cut(s) 974
PkrI GCNGC 7 cut(s) 21, 24, 89, 494, 767, 1258, 1298
Ple19I CGATCG 1 cut(s) 29
PluTI GGCGCC 1 cut(s) 42
Ppu21I YACGTR 2 cut(s) 7, 631
Psp6I CCWGG 5 cut(s) 105, 313, 548, 967, 1190
PspFI CCCAGC 3 cut(s) 383, 645, 1058
PspGI CCWGG 5 cut(s) 105, 313, 548, 967, 1190
PspN4I GGNNCC 7 cut(s) 12, 33, 40, 46, 939, 948, 1272
PspPI GGNCC 2 cut(s) 125, 214
PsrI GAACNNNNNNTAC 2 cut(s) 939, 971
PsuI RGATCY 3 cut(s) 31, 44, 310
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 4 cut(s) 5, 370, 737, 799
RsaNI GTAC 4 cut(s) 4, 369, 736, 798
RseI CAYNNNNRTG 2 cut(s) 749, 1022
SaqAI TTAA 4 cut(s) 281, 447, 1086, 1110
SatI GCNGC 7 cut(s) 20, 23, 88, 493, 766, 1257, 1297
Sau96I GGNCC 2 cut(s) 125, 214
ScrFI CCNGG 8 cut(s) 36, 64, 65, 107, 315, 550, 969, 1192
SduI GDGCHC 1 cut(s) 992
SexAI ACCWGGT 1 cut(s) 967
SfcI CTRYAG 1 cut(s) 1152
SfoI GGCGCC 1 cut(s) 40
SinI GGWCC 2 cut(s) 125, 214
SmaI CCCGGG 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 749, 1022
Sse9I AATT 7 cut(s) 162, 239, 321, 577, 687, 820, 877
SsiI CCGC 5 cut(s) 17, 20, 48, 765, 1279
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 2 cut(s) 1124, 1260
StyD4I CCNGG 8 cut(s) 34, 62, 63, 105, 313, 548, 967, 1190
StyI CCWWGG 1 cut(s) 941
TaiI ACGT 2 cut(s) 9, 633
TaqI TCGA 4 cut(s) 534, 749, 826, 832
TasI AATT 7 cut(s) 162, 239, 321, 577, 687, 820, 877
TatI WGTACW 3 cut(s) 368, 735, 797
TauI GCSGC 2 cut(s) 22, 768
TfiI GAWTC 3 cut(s) 59, 531, 911
Tru1I TTAA 4 cut(s) 281, 447, 1086, 1110
Tru9I TTAA 4 cut(s) 281, 447, 1086, 1110
TscAI CASTG 4 cut(s) 506, 548, 566, 1306
TseFI GTSAC 2 cut(s) 175, 1233
TseI GCWGC 5 cut(s) 22, 87, 492, 1256, 1296
Tsp45I GTSAC 2 cut(s) 175, 1233
TspDTI ATGAA 4 cut(s) 583, 733, 1110, 1329
TspMI CCCGGG 1 cut(s) 63
TspRI CASTG 4 cut(s) 506, 548, 566, 1306
Van91I CCANNNNNTGG 1 cut(s) 974
VpaK11BI GGWCC 2 cut(s) 125, 214
XapI RAATTY 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmaI CCCGGG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 1158
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 2 cut(s) 1124, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.