Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008943

Physical Location & Seq

Genomic Coordinates Reverse (-)

356265 .. 357657

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCAACAACTGTGTAGAAAGATCGATCACCATTGTCCCTGGGTTGGGCAGTGTATTGGTCTGAGGAACTATCGATTCTTCTTCATGTTTGTCTTCAACACAACTCTTCTTTGTATATACGTTTTTGGATTCTGCTGGGTGTACGTTAGAAGGATCATGGGAGCTGAGGAGACAACGATTTGGAAAGCAATGATTAAAACTCCAGCATCTATTGTGCTAATAGTTTACACTTTCATATCGATGTGGTTTGTTGGTGGCCTTACTGCCTTCCATTTGTATCTCATCAGTACAAATCAGACTACATATGAGAATTTCCGGTACCGATATGATAGGCGAGCCAACCCCTATAACAAAGGAGTTGTCGACAATTTCAAGGAGATATTTTGTACCGCCATTCCCAAGTCTAAGAACCATTTCAGGGACAAGGTGCCAAGGGAGCCGGCGTTACCTCCTCGATCAGGGGGTGGGGGTTTTATGAGCCCAAATATGGGAAAAGCTGTGGAGGACATTGAAATGGGCAGGAAAACCGTGTGGGGTGACATGAGTGCTGGGGGAGATAATTACGAAGGGCAGCATAACGGCAATGATCGTGTGAATGTGAAAGATGGTGAATTAAGTGAAGTATCCCCAGATATAAGGACGACAGTAGATGAAACTGTGGATCGTGCTGGAATGCATCCCAGGCGAGCCAGCTGGGGAAGGAAAAGTGGAAGTTGGGAAATGTCCCCAGAAGTTCTTGCCTTGGCAGCTAGAGTCGGGGAACCAAACCGCATAGGCGGGAGTAGCAGCGGTGGTCTGACGAACGAGAACCGACATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

274

Amino Acids

31.0

Weight (kDa)

9.12

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26935 AT5G41060 AT5G41060 AT5G41060 AT5G41060
fragaria_vesca	FvH4_6g53970
malus_domestica	MD09G1006700.v1.1 MD17G1010600.v1.1
prunus_persica	Prupe.3G310300_v2.0.a1
pyrus_communis	pycom111g00500 pycom17g00540
rosa_chinensis	RchiOBHm_Chr2g0176141
rosa_laevigata	RLG00000022384
rosa_multiflora	Rmu_co8474081.1_g000001 Rmu_sc0012674.1_g000004
rosa_roxburghii	Rroxscaffold_2G00076740
rosa_rugosa	Rorug02G0590900
rosa_samantha	Rh2AG669600 Rh2BG681200 Rh2CG644100 Rh2DG694900
rosa_wichuraiana	Rw2G054930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	2 cut(s)	318, 427
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	4 cut(s)	390, 769, 777, 789
AclWI	GGATC	2 cut(s)	161, 669
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	4 cut(s)	143, 289, 320, 388
AfiI	CCNNNNNNNGG	6 cut(s)	44, 45, 418, 458, 487, 488
AgsI	TTSAA	3 cut(s)	97, 373, 512
AjnI	CCWGG	2 cut(s)	38, 680
AluBI	AGCT	4 cut(s)	164, 497, 693, 749
AluI	AGCT	4 cut(s)	164, 497, 693, 749
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	161, 669
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	571, 746, 786
ApoI	RAATTY	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	20, 548, 620
BanI	GGYRCC	2 cut(s)	318, 427
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	583, 758, 798
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	2 cut(s)	40, 682
BciVI	GTATCC	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	750
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	3 cut(s)	572, 747, 787
BlsI	GCNGC	3 cut(s)	573, 748, 788
Bme1390I	CCNGG	2 cut(s)	40, 682
BmiI	GGNNCC	4 cut(s)	320, 429, 438, 762
BmrFI	CCNGG	2 cut(s)	40, 682
BmsI	GCATC	2 cut(s)	215, 685
BpiI	GAAGAC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	165
Bsa29I	ATCGAT	3 cut(s)	24, 73, 239
BsaJI	CCNNGG	5 cut(s)	38, 39, 431, 680, 741
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 45, 418, 458, 487, 488
Bse118I	RCCGGY	1 cut(s)	439
Bse3DI	GCAATG	2 cut(s)	195, 589
BseBI	CCWGG	2 cut(s)	40, 682
BseCI	ATCGAT	3 cut(s)	24, 73, 239
BseDI	CCNNGG	5 cut(s)	38, 39, 431, 680, 741
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	6 cut(s)	44, 45, 418, 458, 487, 488
BseMI	GCAATG	2 cut(s)	195, 589
BseMII	CTCAG	2 cut(s)	53, 156
BseRI	GAGGAG	2 cut(s)	182, 441
BseXI	GCAGC	3 cut(s)	583, 758, 798
BseYI	CCCAGC	3 cut(s)	135, 548, 693
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	2 cut(s)	318, 427
BshVI	ATCGAT	3 cut(s)	24, 73, 239
BsiSI	CCGG	2 cut(s)	316, 440
BslFI	GGGAC	3 cut(s)	21, 434, 709
BslI	CCNNNNNNNGG	6 cut(s)	44, 45, 418, 458, 487, 488
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	3 cut(s)	21, 434, 709
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
BspACI	CCGC	4 cut(s)	390, 769, 777, 789
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	54, 157
BspDI	ATCGAT	3 cut(s)	24, 73, 239
BspLI	GGNNCC	4 cut(s)	320, 429, 438, 762
BspPI	GGATC	2 cut(s)	161, 669
BspT107I	GGYRCC	2 cut(s)	318, 427
BsrDI	GCAATG	2 cut(s)	195, 589
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	5 cut(s)	38, 39, 431, 680, 741
BssMI	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
BssT1I	CCWWGG	2 cut(s)	431, 741
Bst2UI	CCWGG	2 cut(s)	40, 682
Bst4CI	ACNGT	4 cut(s)	12, 529, 646, 658
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	4 cut(s)	336, 441, 687, 691
BstDEI	CTNAG	3 cut(s)	62, 165, 405
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	676
BstKTI	GATC	6 cut(s)	24, 28, 156, 458, 589, 664
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 682, 746, 783
BstNI	CCWGG	2 cut(s)	40, 682
BstSCI	CCNGG	2 cut(s)	38, 680
BstV1I	GCAGC	3 cut(s)	583, 758, 798
BstV2I	GAAGAC	1 cut(s)	85
Bsu15I	ATCGAT	3 cut(s)	24, 73, 239
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	258
BsuTUI	ATCGAT	3 cut(s)	24, 73, 239
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	4 cut(s)	336, 441, 687, 691
Cfr10I	RCCGGY	1 cut(s)	439
ClaI	ATCGAT	3 cut(s)	24, 73, 239
Csp6I	GTAC	4 cut(s)	142, 288, 319, 387
CviAII	CATG	3 cut(s)	85, 157, 541
CviJI	RGCY	9 cut(s)	164, 258, 338, 439, 480, 497, 689, 693, 749
CviKI_1	RGCY	9 cut(s)	164, 258, 338, 439, 480, 497, 689, 693, 749
CviQI	GTAC	4 cut(s)	142, 288, 319, 387
DdeI	CTNAG	3 cut(s)	62, 165, 405
DpnI	GATC	6 cut(s)	23, 27, 155, 457, 588, 663
DpnII	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	431, 741
Eco24I	GRGCYC	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	38, 680
EcoT14I	CCWWGG	2 cut(s)	431, 741
EcoT22I	ATGCAT	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	2 cut(s)	431, 741
FaeI	CATG	3 cut(s)	88, 160, 544
FaqI	GGGAC	3 cut(s)	21, 434, 709
FatI	CATG	3 cut(s)	84, 156, 540
FauI	CCCGC	1 cut(s)	770
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	572, 747, 787
FokI	GGATG	1 cut(s)	663
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	572, 747, 787
FspBI	CTAG	1 cut(s)	750
GluI	GCNGC	3 cut(s)	572, 747, 787
GsaI	CCCAGC	3 cut(s)	139, 552, 697
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	316, 440
Hin1II	CATG	3 cut(s)	88, 160, 544
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	3 cut(s)	75, 129, 753
HpaII	CCGG	2 cut(s)	316, 440
HphI	GGTGA	3 cut(s)	20, 548, 620
Hpy166II	GTNNAC	3 cut(s)	142, 226, 364
Hpy188I	TCNGA	3 cut(s)	63, 297, 798
Hpy8I	GTNNAC	3 cut(s)	142, 226, 364
HpyAV	CCTTC	4 cut(s)	144, 277, 560, 693
HpyCH4III	ACNGT	4 cut(s)	12, 529, 646, 658
HpyCH4IV	ACGT	2 cut(s)	120, 144
HpyCH4V	TGCA	2 cut(s)	4, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 682, 746, 783
HpyF3I	CTNAG	3 cut(s)	62, 165, 405
HpySE526I	ACGT	2 cut(s)	120, 144
Hsp92II	CATG	3 cut(s)	88, 160, 544
KpnI	GGTACC	1 cut(s)	322
KroI	GCCGGC	1 cut(s)	439
KroNI	GCCGGC	1 cut(s)	441
Kzo9I	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
LmnI	GCTCC	2 cut(s)	161, 436
Lsp1109I	GCAGC	3 cut(s)	583, 758, 798
LweI	GCATC	2 cut(s)	215, 685
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	2 cut(s)	120, 144
MaeIII	GTNAC	2 cut(s)	444, 536
MalI	GATC	6 cut(s)	23, 27, 155, 457, 588, 663
MboI	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
MboII	GAAGA	4 cut(s)	70, 73, 85, 98
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	4 cut(s)	310, 367, 559, 611
MlyI	GAGTC	1 cut(s)	762
MnlI	CCTC	5 cut(s)	57, 160, 459, 462, 496
Mph1103I	ATGCAT	1 cut(s)	678
MroNI	GCCGGC	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	2 cut(s)	195, 614
MslI	CAYNNNNRTG	2 cut(s)	239, 512
MspA1I	CMGCKG	2 cut(s)	693, 789
MspI	CCGG	2 cut(s)	316, 440
MspR9I	CCNGG	2 cut(s)	40, 682
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	40, 682
MwoI	GCNNNNNNNGC	4 cut(s)	436, 682, 746, 783
NaeI	GCCGGC	1 cut(s)	441
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
NgoMIV	GCCGGC	1 cut(s)	439
NlaIII	CATG	3 cut(s)	88, 160, 544
NlaIV	GGNNCC	4 cut(s)	320, 429, 438, 762
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	678
PasI	CCCWGGG	1 cut(s)	39
PctI	GAATGC	1 cut(s)	678
PdiI	GCCGGC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	75, 129
PkrI	GCNGC	3 cut(s)	573, 748, 788
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	38, 680
PspFI	CCCAGC	3 cut(s)	135, 548, 693
PspGI	CCWGG	2 cut(s)	38, 680
PspN4I	GGNNCC	4 cut(s)	320, 429, 438, 762
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	4 cut(s)	143, 289, 320, 388
RsaNI	GTAC	4 cut(s)	142, 288, 319, 387
RseI	CAYNNNNRTG	2 cut(s)	239, 512
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	195, 614
SatI	GCNGC	3 cut(s)	572, 747, 787
Sau3AI	GATC	6 cut(s)	21, 25, 153, 455, 586, 661
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	2 cut(s)	40, 682
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	8 cut(s)	123, 147, 166, 429, 451, 499, 695, 751
SfaNI	GCATC	2 cut(s)	215, 685
SmiMI	CAYNNNNRTG	2 cut(s)	239, 512
Sse9I	AATT	4 cut(s)	310, 367, 559, 611
SsiI	CCGC	4 cut(s)	390, 769, 777, 789
SspMI	CTAG	1 cut(s)	750
StyD4I	CCNGG	2 cut(s)	38, 680
StyI	CCWWGG	2 cut(s)	431, 741
TaaI	ACNGT	4 cut(s)	12, 529, 646, 658
TaiI	ACGT	2 cut(s)	123, 147
TaqI	TCGA	5 cut(s)	24, 73, 239, 363, 454
TasI	AATT	4 cut(s)	310, 367, 559, 611
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	75, 129
Tru1I	TTAA	2 cut(s)	195, 614
Tru9I	TTAA	2 cut(s)	195, 614
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	3 cut(s)	571, 746, 786
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	73, 223, 666
TspRI	CASTG	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	456
XapI	RAATTY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	1 cut(s)	750
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.