Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008943

Physical Location & Seq

Genomic Coordinates Reverse (-)

486144 .. 489304

Gene Structure 3161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTACGTGGTGCCTCCGCCTCAGCGATCGGATCCGGCTCCCGGATCCGGCTCCACTGATTCCCGGGTCTACCAAATTTGGAAAGGCAGCAATATATTTTTTCTCCAGGGGAGATTTATCTTTGGACCAGATGTAAGATCCTTGGGCCTCACCATACTTCTAATTCTTGCTCCTGTCACTATTTTCTGCGTCTTTGTTGCCAGAAGGTTGATGGATCATTTTTCCTATCACTTGGGAATATTGATTATGGCTGTCGCTGTTGTATTCACAGTCTATGATTTAGTGCTCCTCCTGCTAACCTCTGGAAGAGATCCTGGTATAATCCCCCGTAACACACACCCCCTGAGCCAGAAGGCTTTGATGGGAGTACAGAAAGTGGGGCAGGACAAACTCCACAACCCCCTCGCTGCTCCCACTGTTCAATATGCAACAACTGTGTGGAACGATTCGACCACCACTGTCCCTGGGTTGGGCAGTGTATTGGGCTGGCGAGCCAATCCATATAACAAAGGAGTAGTTAACAATTTCAAGGAGATATTTTGCACCAGCATTCCTGAGTCTAAGAATGACTTCAGGGAAAAGGTGCCAAGGGAACCTGTGTTACCTCCTCGACCAGGTGGTGGCGGTTTTATGAGCCCAAATATGGGAAAAGCCGTGGACGACATAGAAATGGGAAGAAAAACTGTGTGGGGAGACATGGGTGCCGGGGGTGATCATTTTGAAGGGCAACTTAACAGCAATGATCGCCAGAATGTAAAGGATGGGGAACTAGGTGAAGTTTCCCCAGACATGAGGACTACAGTAGATGAGACTGTGGATCGTGCTGGAATACATCCCAGGCGATCCAGTTGGGGAAGGAAAAGTGGAAGTTGGGAAATGTCGCCCGAAGTTCTTGCTTTGGCAGCTAGAGTTGGGGAACCAAACCGCGTGGGTGGGAGTAGCAGCAGTGGCTTGACAAATGAAAACCGACAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

325

Amino Acids

35.46

Weight (kDa)

8.85

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26935 AT5G41060 AT5G41060 AT5G41060 AT5G41060
fragaria_vesca	FvH4_6g53970
malus_domestica	MD09G1006700.v1.1 MD17G1010600.v1.1
prunus_persica	Prupe.3G310300_v2.0.a1
pyrus_communis	pycom111g00500 pycom17g00540
rosa_chinensis	RchiOBHm_Chr2g0176141
rosa_laevigata	RLG00000022384
rosa_multiflora	Rmu_co8474081.1_g000001 Rmu_sc0012674.1_g000004
rosa_roxburghii	Rroxscaffold_2G00076740
rosa_rugosa	Rorug02G0590900
rosa_samantha	Rh2AG669600 Rh2BG681200 Rh2CG644100 Rh2DG694900
rosa_wichuraiana	Rw2G054930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	10, 583, 701
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	927
AciI	CCGC	3 cut(s)	17, 624, 925
AclWI	GGATC	9 cut(s)	26, 39, 39, 52, 132, 222, 305, 825, 837
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	556
AfaI	GTAC	2 cut(s)	5, 369
AfiI	CCNNNNNNNGG	8 cut(s)	41, 47, 469, 470, 614, 620, 643, 644
AgsI	TTSAA	3 cut(s)	422, 529, 722
AjnI	CCWGG	5 cut(s)	105, 313, 463, 613, 836
AluBI	AGCT	1 cut(s)	905
AluI	AGCT	1 cut(s)	905
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	687, 803
AlwI	GGATC	9 cut(s)	26, 39, 39, 52, 132, 222, 305, 825, 837
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	87, 407, 902, 942
ApoI	RAATTY	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	569
AspS9I	GGNCC	2 cut(s)	125, 145
AsuC2I	CCSGG	4 cut(s)	42, 64, 65, 706
AsuHPI	GGTGA	3 cut(s)	142, 722, 785
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	2 cut(s)	31, 44
BanI	GGYRCC	3 cut(s)	10, 583, 701
BanII	GRGCYC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	99, 394, 914, 954
BccI	CCATC	3 cut(s)	205, 355, 755
BceAI	ACGGC	1 cut(s)	638
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	5 cut(s)	107, 315, 465, 615, 838
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	4 cut(s)	42, 64, 65, 706
BcoDI	GTCTC	2 cut(s)	687, 803
BfaI	CTAG	2 cut(s)	770, 906
BfmI	CTRYAG	1 cut(s)	798
BisI	GCNGC	4 cut(s)	88, 408, 903, 943
BlsI	GCNGC	4 cut(s)	89, 409, 904, 944
Bme1390I	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 465, 615, 706, 838
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	125, 145
BmiI	GGNNCC	9 cut(s)	12, 33, 39, 46, 52, 585, 594, 703, 918
BmrFI	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 465, 615, 706, 838
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	21, 344
BpuMI	CCSGG	4 cut(s)	42, 64, 65, 706
BsaAI	YACGTR	1 cut(s)	7
BsaJI	CCNNGG	9 cut(s)	63, 106, 141, 463, 464, 587, 654, 705, 836
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 47, 469, 470, 614, 620, 643, 644
Bse1I	ACTGG	1 cut(s)	846
Bse3DI	GCAATG	1 cut(s)	745
BseBI	CCWGG	5 cut(s)	107, 315, 465, 615, 838
BseDI	CCNNGG	9 cut(s)	63, 106, 141, 463, 464, 587, 654, 705, 836
BseGI	GGATG	2 cut(s)	766, 832
BseLI	CCNNNNNNNGG	8 cut(s)	41, 47, 469, 470, 614, 620, 643, 644
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	35, 335, 546
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	2 cut(s)	278, 597
BseXI	GCAGC	4 cut(s)	99, 394, 914, 954
Bsh1236I	CGCG	1 cut(s)	927
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	3 cut(s)	10, 583, 701
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	5 cut(s)	35, 42, 48, 64, 705
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	8 cut(s)	41, 47, 469, 470, 614, 620, 643, 644
BsmAI	GTCTC	2 cut(s)	687, 803
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	288, 638
BspACI	CCGC	3 cut(s)	17, 624, 925
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	34, 336, 547
BspFNI	CGCG	1 cut(s)	927
BspLI	GGNNCC	9 cut(s)	12, 33, 39, 46, 52, 585, 594, 703, 918
BspPI	GGATC	9 cut(s)	26, 39, 39, 52, 132, 222, 305, 825, 837
BspT107I	GGYRCC	3 cut(s)	10, 583, 701
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	9 cut(s)	63, 106, 141, 463, 464, 587, 654, 705, 836
BssT1I	CCWWGG	2 cut(s)	141, 587
Bst2UI	CCWGG	5 cut(s)	107, 315, 465, 615, 838
Bst4CI	ACNGT	7 cut(s)	271, 418, 436, 460, 685, 802, 814
Bst6I	CTCTTC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	488, 492
BstDEI	CTNAG	4 cut(s)	21, 344, 555, 561
BstDSI	CCRYGG	1 cut(s)	654
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	2 cut(s)	766, 832
BstFNI	CGCG	1 cut(s)	927
BstMAI	GTCTC	2 cut(s)	687, 803
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 744, 902, 948
BstNI	CCWGG	5 cut(s)	107, 315, 465, 615, 838
BstSCI	CCNGG	9 cut(s)	40, 62, 63, 105, 313, 463, 613, 704, 836
BstSFI	CTRYAG	1 cut(s)	798
BstUI	CGCG	1 cut(s)	927
BstV1I	GCAGC	4 cut(s)	99, 394, 914, 954
BstX2I	RGATCY	4 cut(s)	31, 44, 137, 310
BstYI	RGATCY	4 cut(s)	31, 44, 137, 310
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	766, 832
BtsI	GCAGTG	2 cut(s)	481, 952
BtsIMutI	CAGTG	5 cut(s)	54, 414, 456, 481, 952
Cac8I	GCNNGC	2 cut(s)	488, 492
Cfr13I	GGNCC	2 cut(s)	125, 145
Cfr9I	CCCGGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	178
CsiI	ACCWGGT	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	4, 368
CspCI	CAANNNNNGTGG	2 cut(s)	909, 944
CviAII	CATG	2 cut(s)	697, 790
CviQI	GTAC	2 cut(s)	4, 368
DdeI	CTNAG	4 cut(s)	21, 344, 555, 561
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	141, 587
Eco24I	GRGCYC	1 cut(s)	638
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoRII	CCWGG	5 cut(s)	105, 313, 463, 613, 836
EcoT14I	CCWWGG	2 cut(s)	141, 587
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	2 cut(s)	141, 587
FaeI	CATG	2 cut(s)	700, 793
FalI	AAGNNNNNCTT	4 cut(s)	554, 586, 714, 746
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	696, 789
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	88, 408, 903, 943
FokI	GGATG	2 cut(s)	773, 819
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	4 cut(s)	88, 408, 903, 943
FspBI	CTAG	2 cut(s)	770, 906
GluI	GCNGC	4 cut(s)	88, 408, 903, 943
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	5 cut(s)	35, 42, 48, 64, 705
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	700, 793
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	3 cut(s)	59, 446, 557
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	5 cut(s)	35, 42, 48, 64, 705
HphI	GGTGA	3 cut(s)	142, 722, 785
Hpy166II	GTNNAC	3 cut(s)	70, 520, 658
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	303, 554
Hpy8I	GTNNAC	3 cut(s)	70, 520, 658
HpyAV	CCTTC	4 cut(s)	198, 346, 716, 849
HpyCH4III	ACNGT	7 cut(s)	271, 418, 436, 460, 685, 802, 814
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	428, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 744, 902, 948
HpyF3I	CTNAG	4 cut(s)	21, 344, 555, 561
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	700, 793
Ksp22I	TGATCA	1 cut(s)	712
KspAI	GTTAAC	1 cut(s)	520
LmnI	GCTCC	5 cut(s)	43, 56, 175, 291, 415
Lsp1109I	GCAGC	4 cut(s)	99, 394, 914, 954
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	2 cut(s)	770, 906
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	175, 329, 600
MboII	GAAGA	2 cut(s)	318, 687
MflI	RGATCY	4 cut(s)	31, 44, 137, 310
MhlI	GDGCHC	2 cut(s)	288, 638
MluCI	AATT	3 cut(s)	75, 162, 523
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	9 cut(s)	24, 30, 158, 299, 310, 413, 615, 618, 786
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	2 cut(s)	519, 732
MslI	CAYNNNNRTG	1 cut(s)	668
MspI	CCGG	5 cut(s)	35, 42, 48, 64, 705
MspR9I	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 465, 615, 706, 838
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	5 cut(s)	107, 315, 465, 615, 838
MvnI	CGCG	1 cut(s)	927
MwoI	GCNNNNNNNGC	4 cut(s)	292, 744, 902, 948
NciI	CCSGG	4 cut(s)	42, 64, 65, 706
NlaIII	CATG	2 cut(s)	700, 793
NlaIV	GGNNCC	9 cut(s)	12, 33, 39, 46, 52, 585, 594, 703, 918
NmuCI	GTSAC	1 cut(s)	175
PasI	CCCWGGG	1 cut(s)	464
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	2 cut(s)	59, 446
PflMI	CCANNNNNTGG	1 cut(s)	620
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	89, 409, 904, 944
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	7
Psp6I	CCWGG	5 cut(s)	105, 313, 463, 613, 836
PspGI	CCWGG	5 cut(s)	105, 313, 463, 613, 836
PspN4I	GGNNCC	9 cut(s)	12, 33, 39, 46, 52, 585, 594, 703, 918
PspPI	GGNCC	2 cut(s)	125, 145
PsrI	GAACNNNNNNTAC	2 cut(s)	585, 617
PsuI	RGATCY	4 cut(s)	31, 44, 137, 310
PvuI	CGATCG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	5, 369
RsaNI	GTAC	2 cut(s)	4, 368
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	519, 732
SatI	GCNGC	4 cut(s)	88, 408, 903, 943
Sau96I	GGNCC	2 cut(s)	125, 145
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	9 cut(s)	42, 64, 65, 107, 315, 465, 615, 706, 838
SduI	GDGCHC	2 cut(s)	288, 638
SetI	ASST	9 cut(s)	9, 209, 302, 585, 598, 607, 619, 775, 907
SexAI	ACCWGGT	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	1 cut(s)	125
SmaI	CCCGGG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	668
Sse9I	AATT	3 cut(s)	75, 162, 523
SsiI	CCGC	3 cut(s)	17, 624, 925
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	2 cut(s)	770, 906
StyD4I	CCNGG	9 cut(s)	40, 62, 63, 105, 313, 463, 613, 704, 836
StyI	CCWWGG	2 cut(s)	141, 587
TaaI	ACNGT	7 cut(s)	271, 418, 436, 460, 685, 802, 814
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	449, 610
TasI	AATT	3 cut(s)	75, 162, 523
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	59, 446
Tru1I	TTAA	2 cut(s)	519, 732
Tru9I	TTAA	2 cut(s)	519, 732
TscAI	CASTG	5 cut(s)	61, 421, 463, 481, 952
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	4 cut(s)	87, 407, 902, 942
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	975
TspMI	CCCGGG	1 cut(s)	63
TspRI	CASTG	5 cut(s)	61, 421, 463, 481, 952
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	770, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.