Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474081.1

Orthogroup ID

OG0008943

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2008

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

gatttagtgctcctcctgctaacctctggaagagatcctggtataatcccccgtaacacacacccccctgagccagaaggccttgatgggagtacagaaagtggggcaggacaaactccacagttgcgcttgccgcgcatcaaagaagtagaggtgaatggtatctctgttaagatcaaatactgtgatacttgtatgctttatagaccccctcgctgctcccactgttcaatatgcaacaactgtgtggaacgattcgaccaccactgtccctgggttggacagtgtattgggctgagaaattatcgattcttcttcatgtttgtcttctccacaacccttctttgtatatacgtgtttgcattctgctgggtgtatgttaggaggatcatgggaagcgatgacacaacaatttggaaagcaatgatgaaaactccagcctctattgttctaatagtttacacttttatatcgatgtggtttgttggcggccttactgccttccatttatatctcatcagtacaaatcagactacatatgagaattttcgatatcgatatgataggcgagccaatccatataacaaaggagttgttaacaatttcaaggagatattttgcaccagcattcctgagtctaagaatgacttcagggaaaaggtgccaagggaacctgtgttacctcctcgaccaggcggtggcggttttatgagcccaaatatgggaaaagccgtggacgacatagaaatgggaagaaaaactgtgtggggagacatgggtgccgggggtgatcattttgaagggcaacttaacagcaatgatcgccagaatgtaaaggatggggaactaggtgaagtttccccagacatgaggactacagtagacgagactgtggatcgtgctggaatacatcccaggcgatccagttggggaaggaaaagtggaagttgggaaatgtcgcccgaagttcttgctttggcagctagagttggggaaccaaaccacatgggtgggagtagcagcagtggcttgacaaatgaaaaccgacagacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

351

Amino Acids

39.53

Weight (kDa)

8.03

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26935 AT5G41060 AT5G41060 AT5G41060 AT5G41060
fragaria_vesca	FvH4_6g53970
malus_domestica	MD09G1006700.v1.1 MD17G1010600.v1.1
prunus_persica	Prupe.3G310300_v2.0.a1
pyrus_communis	pycom111g00500 pycom17g00540
rosa_chinensis	RchiOBHm_Chr2g0176141
rosa_laevigata	RLG00000022384
rosa_multiflora	Rmu_co8474081.1_g000001 Rmu_sc0012674.1_g000004
rosa_roxburghii	Rroxscaffold_2G00076740
rosa_rugosa	Rorug02G0590900
rosa_samantha	Rh2AG669600 Rh2BG681200 Rh2CG644100 Rh2DG694900
rosa_wichuraiana	Rw2G054930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	661, 779
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	882
AccII	CGCG	1 cut(s)	136
AciI	CCGC	4 cut(s)	134, 489, 696, 702
AclWI	GGATC	4 cut(s)	29, 395, 903, 915
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	634
AfaI	GTAC	2 cut(s)	94, 523
AfiI	CCNNNNNNNGG	5 cut(s)	278, 692, 698, 721, 722
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	231, 607, 800
AjnI	CCWGG	4 cut(s)	37, 272, 691, 914
AleI	CACNNNNGTG	1 cut(s)	1008
AluBI	AGCT	1 cut(s)	983
AluI	AGCT	1 cut(s)	983
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	765, 881
AlwI	GGATC	4 cut(s)	29, 395, 903, 915
AoxI	GGCC	2 cut(s)	79, 490
ApeKI	GCWGC	3 cut(s)	216, 980, 1020
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	129, 138
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	3 cut(s)	166, 800, 863
BanI	GGYRCC	2 cut(s)	661, 779
BanII	GRGCYC	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	203, 992, 1032
BccI	CCATC	2 cut(s)	80, 833
BceAI	ACGGC	1 cut(s)	716
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BciT130I	CCWGG	4 cut(s)	39, 274, 693, 916
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	765, 881
BfaI	CTAG	2 cut(s)	848, 984
BfmI	CTRYAG	1 cut(s)	876
BisI	GCNGC	5 cut(s)	134, 217, 490, 981, 1021
BlsI	GCNGC	5 cut(s)	135, 218, 491, 982, 1022
Bme1390I	CCNGG	5 cut(s)	39, 274, 693, 784, 916
BmiI	GGNNCC	4 cut(s)	663, 672, 781, 996
BmrFI	CCNGG	5 cut(s)	39, 274, 693, 784, 916
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	784
Bsa29I	ATCGAT	3 cut(s)	307, 473, 556
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	6 cut(s)	272, 273, 665, 732, 783, 914
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 692, 698, 721, 722
Bse1I	ACTGG	1 cut(s)	924
Bse3DI	GCAATG	2 cut(s)	429, 823
BseBI	CCWGG	4 cut(s)	39, 274, 693, 916
BseCI	ATCGAT	3 cut(s)	307, 473, 556
BseDI	CCNNGG	6 cut(s)	272, 273, 665, 732, 783, 914
BseGI	GGATG	2 cut(s)	844, 910
BseLI	CCNNNNNNNGG	5 cut(s)	278, 692, 698, 721, 722
BseMI	GCAATG	2 cut(s)	429, 823
BseMII	CTCAG	3 cut(s)	60, 287, 624
BseNI	ACTGG	1 cut(s)	924
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	3 cut(s)	203, 992, 1032
BseYI	CCCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	81, 492
BshNI	GGYRCC	2 cut(s)	661, 779
BshVI	ATCGAT	3 cut(s)	307, 473, 556
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	5 cut(s)	278, 692, 698, 721, 722
BsmAI	GTCTC	2 cut(s)	765, 881
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	2 cut(s)	362, 627
BsnI	GGCC	2 cut(s)	81, 492
Bsp1286I	GDGCHC	2 cut(s)	12, 716
Bsp143I	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
BspACI	CCGC	4 cut(s)	134, 489, 696, 702
BspANI	GGCC	2 cut(s)	81, 492
BspCNI	CTCAG	3 cut(s)	61, 288, 625
BspDI	ATCGAT	3 cut(s)	307, 473, 556
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	4 cut(s)	663, 672, 781, 996
BspPI	GGATC	4 cut(s)	29, 395, 903, 915
BspT107I	GGYRCC	2 cut(s)	661, 779
BsrDI	GCAATG	2 cut(s)	429, 823
BsrI	ACTGG	1 cut(s)	924
BssECI	CCNNGG	6 cut(s)	272, 273, 665, 732, 783, 914
BssMI	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	4 cut(s)	39, 274, 693, 916
Bst4CI	ACNGT	9 cut(s)	123, 185, 227, 245, 269, 285, 763, 880, 892
Bst6I	CTCTTC	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	131, 570
BstDEI	CTNAG	4 cut(s)	69, 296, 633, 639
BstDSI	CCRYGG	1 cut(s)	732
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	844, 910
BstFNI	CGCG	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	129, 138
BstKTI	GATC	7 cut(s)	37, 177, 390, 793, 823, 898, 923
BstMAI	GTCTC	2 cut(s)	765, 881
BstMBI	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 133, 135, 822, 980, 1026
BstNI	CCWGG	4 cut(s)	39, 274, 693, 916
BstSCI	CCNGG	5 cut(s)	37, 272, 691, 782, 914
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	203, 992, 1032
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	34
Bsu15I	ATCGAT	3 cut(s)	307, 473, 556
BsuRI	GGCC	2 cut(s)	81, 492
BsuTUI	ATCGAT	3 cut(s)	307, 473, 556
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	844, 910
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	4 cut(s)	223, 265, 290, 1030
Cac8I	GCNNGC	2 cut(s)	131, 570
CfoI	GCGC	2 cut(s)	129, 138
ClaI	ATCGAT	3 cut(s)	307, 473, 556
Csp6I	GTAC	2 cut(s)	93, 522
CviAII	CATG	5 cut(s)	319, 391, 775, 868, 1006
CviQI	GTAC	2 cut(s)	93, 522
DdeI	CTNAG	4 cut(s)	69, 296, 633, 639
DpnI	GATC	7 cut(s)	36, 176, 389, 792, 822, 897, 922
DpnII	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	665
Eco147I	AGGCCT	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	716
Eco32I	GATATC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoRII	CCWGG	4 cut(s)	37, 272, 691, 914
EcoRV	GATATC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	5 cut(s)	322, 394, 778, 871, 1009
FalI	AAGNNNNNCTT	4 cut(s)	632, 664, 792, 824
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	5 cut(s)	318, 390, 774, 867, 1005
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	5 cut(s)	134, 217, 490, 981, 1021
FokI	GGATG	2 cut(s)	851, 897
FriOI	GRGCYC	1 cut(s)	716
Fsp4HI	GCNGC	5 cut(s)	134, 217, 490, 981, 1021
FspBI	CTAG	2 cut(s)	848, 984
GlaI	GCGC	2 cut(s)	128, 137
GluI	GCNGC	5 cut(s)	134, 217, 490, 981, 1021
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	81, 492
HapII	CCGG	1 cut(s)	783
HhaI	GCGC	2 cut(s)	129, 138
Hin1II	CATG	5 cut(s)	322, 394, 778, 871, 1009
Hin6I	GCGC	2 cut(s)	127, 136
HinP1I	GCGC	2 cut(s)	127, 136
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	255, 309, 635
HpaI	GTTAAC	1 cut(s)	598
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	3 cut(s)	166, 800, 863
Hpy166II	GTNNAC	4 cut(s)	460, 598, 736, 883
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	2 cut(s)	27, 632
Hpy8I	GTNNAC	4 cut(s)	460, 598, 736, 883
HpyAV	CCTTC	5 cut(s)	71, 350, 511, 794, 927
HpyCH4III	ACNGT	9 cut(s)	123, 185, 227, 245, 269, 285, 763, 880, 892
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	237, 362, 621
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 133, 135, 822, 980, 1026
HpyF3I	CTNAG	4 cut(s)	69, 296, 633, 639
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	322, 394, 778, 871, 1009
HspAI	GCGC	2 cut(s)	127, 136
Ksp22I	TGATCA	1 cut(s)	790
KspAI	GTTAAC	1 cut(s)	598
Kzo9I	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
LmnI	GCTCC	2 cut(s)	15, 224
Lsp1109I	GCAGC	3 cut(s)	203, 992, 1032
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	848, 984
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	53, 678
MalI	GATC	7 cut(s)	36, 176, 389, 792, 822, 897, 922
MboI	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
MboII	GAAGA	5 cut(s)	42, 304, 307, 319, 765
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	12, 716
MluCI	AATT	4 cut(s)	301, 411, 544, 601
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	9 cut(s)	23, 34, 145, 222, 378, 451, 693, 696, 864
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	3 cut(s)	171, 597, 810
MslI	CAYNNNNRTG	2 cut(s)	746, 1008
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	5 cut(s)	39, 274, 693, 784, 916
Mva1269I	GAATGC	2 cut(s)	362, 627
MvaI	CCWGG	4 cut(s)	39, 274, 693, 916
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	6 cut(s)	16, 133, 135, 822, 980, 1026
NciI	CCSGG	1 cut(s)	784
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
NlaIII	CATG	5 cut(s)	322, 394, 778, 871, 1009
NlaIV	GGNNCC	4 cut(s)	663, 672, 781, 996
OliI	CACNNNNGTG	1 cut(s)	1008
PasI	CCCWGGG	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	81
PctI	GAATGC	2 cut(s)	362, 627
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	255, 309
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	5 cut(s)	135, 218, 491, 982, 1022
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Ppu21I	YACGTR	1 cut(s)	355
Psp6I	CCWGG	4 cut(s)	37, 272, 691, 914
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	4 cut(s)	37, 272, 691, 914
PspN4I	GGNNCC	4 cut(s)	663, 672, 781, 996
PsrI	GAACNNNNNNTAC	2 cut(s)	663, 695
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	2 cut(s)	94, 523
RsaNI	GTAC	2 cut(s)	93, 522
RseI	CAYNNNNRTG	2 cut(s)	746, 1008
SaqAI	TTAA	3 cut(s)	171, 597, 810
SatI	GCNGC	5 cut(s)	134, 217, 490, 981, 1021
Sau3AI	GATC	7 cut(s)	34, 174, 387, 790, 820, 895, 920
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	5 cut(s)	39, 274, 693, 784, 916
SduI	GDGCHC	2 cut(s)	12, 716
SetI	ASST	8 cut(s)	26, 156, 357, 663, 676, 685, 853, 985
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	2 cut(s)	746, 1008
Sse9I	AATT	4 cut(s)	301, 411, 544, 601
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	4 cut(s)	134, 489, 696, 702
SspMI	CTAG	2 cut(s)	848, 984
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	5 cut(s)	37, 272, 691, 782, 914
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	9 cut(s)	123, 185, 227, 245, 269, 285, 763, 880, 892
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	6 cut(s)	258, 307, 473, 550, 556, 688
TasI	AATT	4 cut(s)	301, 411, 544, 601
TatI	WGTACW	2 cut(s)	92, 521
TauI	GCSGC	2 cut(s)	136, 492
TfiI	GAWTC	2 cut(s)	255, 309
Tru1I	TTAA	3 cut(s)	171, 597, 810
Tru9I	TTAA	3 cut(s)	171, 597, 810
TscAI	CASTG	4 cut(s)	230, 272, 290, 1030
TseI	GCWGC	3 cut(s)	216, 980, 1020
TspDTI	ATGAA	3 cut(s)	307, 443, 1053
TspRI	CASTG	4 cut(s)	230, 272, 290, 1030
Van91I	CCANNNNNTGG	1 cut(s)	698
XagI	CCTNNNNNAGG	1 cut(s)	690
XapI	RAATTY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	848, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.