Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014495

Physical Location & Seq

Genomic Coordinates Reverse (-)

16492275 .. 16494059

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATGAAGCTCAAAGTGTATGCAGATCGAATGTCACAGCCATCACGTGCTGTTATCATATTCTGCAAGGTTAATGGAATCCAATTCGATGAGGTCTTGATTTCCTTGGCGAAGCGTCAACAATTATCTCCTGAATTCAAAGATATTAACCCATTGGGGAAAGTTCCAGCTATTGTTGATGGCAGGCTTAAGCTCTTTGAGAGTCACGCAATCCTGATATATCTATCCTCGGCGTTTCCAAGTGTTGCTGATCATTGGTATCCAAATGATCTATCCAAAAGAGCCAAGATTCACTCAGTTTTGGATTGGCATCACACCAATTTACGTCGTGGTGCAGCTGGATATGTTCTGAATAGTGTACTAGGTCCAGCTCTCGGTCTTCCTCTGAATCCGAAAGCAGCTGCTGAAGCTGAGCAGTTACTAACAAAGTCTCTGTCCACTCTAGAGACTTTTTGGCTTAAGGGCAATGCTAAATTCTTGCTCGGAAGCAACCAACCATCTATAGCTGATCTCAGCCTTGTATGCGAACTTATGCAGCTGCAGGTTTTGGATGACAAAGATCGTCTTAGATTGCTCAGCACTCATAAGAAAGTTGAACAATGGATTGAGAATACGAAAAAAGCAACAATGCCTCACTTTGATGAGACCCATGAGATCCTTTTCAAAGTCAAAGAAGGATTCCAGAAGCGGCGAGAGATGGGAACCTTATCTAAACCGGGTCTTCAATCCAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N

Protein Analysis

245

Amino Acids

27.65

Weight (kDa)

9.5

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 76	2.1e-13	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 80	6.3e-10	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 77	3.5e-09	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41210
fragaria_vesca	FvH4_5g02100
malus_domestica	MD06G1081000.v1.1
prunus_persica	Prupe.5G098100_v2.0.a1
pyrus_communis	pycom06g07800
rosa_chinensis	RchiOBHm_Chr7g0198031 RchiOBHm_Chr7g0198101
rosa_laevigata	RLG00000003889 RLG00000003891
rosa_multiflora	Rmu_sc0000221.1_g000031
rosa_roxburghii	Rroxscaffold_3G00258000
rosa_rugosa	Rorug07G0045600
rosa_samantha	Rh7AG168900 Rh7BG172000 Rh7CG178500 Rh7DG171300
rosa_wichuraiana	Rw7G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AciI	CCGC	1 cut(s)	688
AclWI	GGATC	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	134, 473
AcuI	CTGAAG	1 cut(s)	426
AcvI	CACGTG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflII	CTTAAG	2 cut(s)	188, 458
AgsI	TTSAA	4 cut(s)	139, 596, 664, 725
AluBI	AGCT	9 cut(s)	10, 170, 193, 338, 371, 401, 410, 506, 538
AluI	AGCT	9 cut(s)	10, 170, 193, 338, 371, 401, 410, 506, 538
Alw26I	GTCTC	3 cut(s)	435, 440, 638
AlwI	GGATC	1 cut(s)	649
AlwNI	CAGNNNCTG	1 cut(s)	404
ApeKI	GCWGC	5 cut(s)	335, 398, 401, 535, 538
ApoI	RAATTY	2 cut(s)	134, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	717
AvaII	GGWCC	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	47
BbsI	GAAGAC	2 cut(s)	371, 713
BbvI	GCAGC	5 cut(s)	347, 388, 410, 525, 547
BccI	CCATC	4 cut(s)	49, 173, 505, 691
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	717
BcoDI	GTCTC	3 cut(s)	435, 440, 638
BfaI	CTAG	2 cut(s)	362, 443
BfmI	CTRYAG	2 cut(s)	501, 539
BfrI	CTTAAG	2 cut(s)	188, 458
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	6 cut(s)	336, 399, 402, 536, 539, 689
BlpI	GCTNAGC	2 cut(s)	411, 575
BlsI	GCNGC	6 cut(s)	337, 400, 403, 537, 540, 690
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	371, 713
Bpu1102I	GCTNAGC	2 cut(s)	411, 575
BpuMI	CCSGG	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	105, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	105, 228
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	4 cut(s)	309, 402, 526, 589
BseXI	GCAGC	5 cut(s)	347, 388, 410, 525, 547
BsgI	GTGCAG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	716
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	3 cut(s)	435, 440, 638
Bso31I	GGTCTC	1 cut(s)	638
Bsp143I	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
Bsp1720I	GCTNAGC	2 cut(s)	411, 575
BspACI	CCGC	1 cut(s)	688
BspCNI	CTCAG	4 cut(s)	308, 403, 525, 588
BspLI	GGNNCC	1 cut(s)	703
BspMAI	CTGCAG	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	649
BspTI	CTTAAG	2 cut(s)	188, 458
BspTNI	GGTCTC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	105, 228
BssMI	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
BssT1I	CCWWGG	1 cut(s)	105
BstAFI	CTTAAG	2 cut(s)	188, 458
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	5 cut(s)	295, 411, 512, 566, 575
BstF5I	GGATG	1 cut(s)	556
BstKTI	GATC	7 cut(s)	28, 253, 271, 511, 562, 657, 735
BstMAI	GTCTC	3 cut(s)	435, 440, 638
BstMBI	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 522
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	2 cut(s)	501, 539
BstV1I	GCAGC	5 cut(s)	347, 388, 410, 525, 547
BstV2I	GAAGAC	2 cut(s)	371, 713
BstX2I	RGATCY	2 cut(s)	654, 732
BstYI	RGATCY	2 cut(s)	654, 732
BsuI	GTATCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	556
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	1 cut(s)	650
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	5 cut(s)	295, 411, 512, 566, 575
DpnI	GATC	7 cut(s)	27, 252, 270, 510, 561, 656, 734
DpnII	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	638
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	653
FaiI	YATR	9 cut(s)	21, 59, 220, 345, 503, 523, 533, 585, 651
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	1 cut(s)	649
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	6 cut(s)	336, 399, 402, 536, 539, 689
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	6 cut(s)	336, 399, 402, 536, 539, 689
FspBI	CTAG	2 cut(s)	362, 443
GluI	GCNGC	6 cut(s)	336, 399, 402, 536, 539, 689
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	5 cut(s)	78, 202, 289, 388, 678
HpaII	CCGG	1 cut(s)	716
Hpy166II	GTNNAC	3 cut(s)	119, 359, 438
Hpy188I	TCNGA	4 cut(s)	351, 387, 393, 485
Hpy188III	TCNNGA	5 cut(s)	97, 131, 214, 443, 682
Hpy8I	GTNNAC	3 cut(s)	119, 359, 438
Hpy99I	CGWCG	1 cut(s)	330
HpyAV	CCTTC	1 cut(s)	668
HpyCH4IV	ACGT	2 cut(s)	46, 325
HpyCH4V	TGCA	5 cut(s)	23, 66, 335, 535, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 522
HpyF3I	CTNAG	5 cut(s)	295, 411, 512, 566, 575
HpySE526I	ACGT	2 cut(s)	46, 325
Hsp92II	CATG	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
LpnPI	CCDG	9 cut(s)	144, 169, 180, 227, 324, 381, 527, 695, 729
Lsp1109I	GCAGC	5 cut(s)	347, 388, 410, 525, 547
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	362, 443
MaeII	ACGT	2 cut(s)	46, 325
MaeIII	GTNAC	3 cut(s)	33, 203, 417
MalI	GATC	7 cut(s)	27, 252, 270, 510, 561, 656, 734
MboI	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
MboII	GAAGA	2 cut(s)	371, 713
MflI	RGATCY	2 cut(s)	654, 732
MluCI	AATT	5 cut(s)	83, 122, 134, 319, 473
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	4 cut(s)	85, 238, 393, 642
MseI	TTAA	4 cut(s)	72, 147, 189, 459
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	3 cut(s)	338, 401, 538
MspCI	CTTAAG	2 cut(s)	188, 458
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	2 cut(s)	407, 522
NciI	CCSGG	1 cut(s)	717
NdeII	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	33, 203
PfeI	GAWTC	4 cut(s)	78, 289, 388, 678
PkrI	GCNGC	6 cut(s)	337, 400, 403, 537, 540, 690
PleI	GAGTC	1 cut(s)	210
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	47
PspCI	CACGTG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	2 cut(s)	654, 732
PvuII	CAGCTG	3 cut(s)	338, 401, 538
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	72, 147, 189, 459
SatI	GCNGC	6 cut(s)	336, 399, 402, 536, 539, 689
Sau3AI	GATC	7 cut(s)	25, 250, 268, 508, 559, 654, 732
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	717
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	501, 539
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	188, 458
SmoI	CTYRAG	2 cut(s)	188, 458
Sse9I	AATT	5 cut(s)	83, 122, 134, 319, 473
SsiI	CCGC	1 cut(s)	688
SspMI	CTAG	2 cut(s)	362, 443
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	49, 328
TaqI	TCGA	2 cut(s)	28, 87
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	5 cut(s)	83, 122, 134, 319, 473
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	4 cut(s)	78, 289, 388, 678
Tru1I	TTAA	4 cut(s)	72, 147, 189, 459
Tru9I	TTAA	4 cut(s)	72, 147, 189, 459
TseFI	GTSAC	2 cut(s)	33, 203
TseI	GCWGC	5 cut(s)	335, 398, 401, 535, 538
Tsp45I	GTSAC	2 cut(s)	33, 203
TspDTI	ATGAA	1 cut(s)	20
Vha464I	CTTAAG	2 cut(s)	188, 458
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	134, 473
XbaI	TCTAGA	1 cut(s)	442
XspI	CTAG	2 cut(s)	362, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.