Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014495

Physical Location & Seq

Genomic Coordinates Forward (+)

15303166 .. 15305913

Gene Structure 2748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGACAAGTTCCCGCTATTGCTGATGGGAGGTTTAATCTGTTTGAAAGTCATGCAATTCTTGTCTATCTTGCTTGTGCGTTTCCTGGAGTAGCAGATCACTGGTATCCTGCTGATCTTTTCAGGAGAGCTAAAATCAACTCAGTGTTGGATTGGCACCATTTTAACTTACGCCGTGGTGCAATGACATATGTTCTAAATACCGTACTTGCACCTGTGTTTGGACTTCGATTGAATCCACAAGCAGCTGCCGAAGCTGAGAAACTTCTGTCCTCCTCTTTGTCAAAAATTGAGTCTATTTGGCTCAAAGGGAATGGAAAGTTCTTGTTGGGTGGCTTTCAACCATCCATAGCAGATCTCAGCCTGGTTTGTGAAATTATGCAACTTGAGCTTTTGGACGAGAACGACCGCAGTCGGATACTTGGCCCGCACAAGAAAGTTCTAGAGTGGATTGAGAATACAAAAAATGCGACGAGACCTCACTTTGAAGAAGTACATCAAGTGCTCTACAGAGCCAAAACAAGATTTCAAGAGCAGCGGTCGATGGGAGCAAACAACACTAATTCGAGCAAAAGATTGGGTTTGCCTTCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N

Protein Analysis

199

Amino Acids

22.49

Weight (kDa)

9.33

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C_2	PF13410	80 - 152	5.4e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41210
fragaria_vesca	FvH4_5g02100
malus_domestica	MD06G1081000.v1.1
prunus_persica	Prupe.5G098100_v2.0.a1
pyrus_communis	pycom06g07800
rosa_chinensis	RchiOBHm_Chr7g0198031 RchiOBHm_Chr7g0198101
rosa_laevigata	RLG00000003889 RLG00000003891
rosa_multiflora	Rmu_sc0000221.1_g000031
rosa_roxburghii	Rroxscaffold_3G00258000
rosa_rugosa	Rorug07G0045600
rosa_samantha	Rh7AG168900 Rh7BG172000 Rh7CG178500 Rh7DG171300
rosa_wichuraiana	Rw7G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AciI	CCGC	4 cut(s)	15, 409, 428, 538
AfaI	GTAC	2 cut(s)	207, 495
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	47, 235, 341, 488, 530, 591
AjnI	CCWGG	2 cut(s)	85, 363
AluBI	AGCT	4 cut(s)	131, 248, 257, 391
AluI	AGCT	4 cut(s)	131, 248, 257, 391
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	469
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	3 cut(s)	245, 248, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspS9I	GGNCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	235, 257, 547
BccI	CCATC	3 cut(s)	20, 352, 538
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	2 cut(s)	87, 365
BciVI	GTATCC	2 cut(s)	117, 411
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	508
BfuI	GTATCC	2 cut(s)	117, 411
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	3 cut(s)	246, 249, 536
BlsI	GCNGC	3 cut(s)	247, 250, 537
Bme1390I	CCNGG	2 cut(s)	87, 365
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	87, 365
BoxI	GACNNNNGTC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	87, 365
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	156, 249, 373
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	235, 257, 547
Bsh1285I	CGRYCG	2 cut(s)	409, 542
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	156
BsiEI	CGRYCG	2 cut(s)	409, 542
BsiHKAI	GWGCWC	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	426
Bso31I	GGTCTC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	97, 115, 355
BspACI	CCGC	4 cut(s)	15, 409, 428, 538
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	3 cut(s)	155, 250, 372
BspLI	GGNNCC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	97, 115, 355
Bst2UI	CCWGG	2 cut(s)	87, 365
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	142, 258, 359
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	3 cut(s)	100, 118, 358
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	97, 115, 355
BstMCI	CGRYCG	2 cut(s)	409, 542
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 388
BstNI	CCWGG	2 cut(s)	87, 365
BstPAI	GACNNNNGTC	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	85, 363
BstSFI	CTRYAG	1 cut(s)	508
BstV1I	GCAGC	3 cut(s)	235, 257, 547
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	2 cut(s)	117, 411
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	100, 150
Cac8I	GCNNGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	206, 494
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	9 cut(s)	131, 248, 257, 304, 336, 363, 391, 426, 515
CviKI_1	RGCY	9 cut(s)	131, 248, 257, 304, 336, 363, 391, 426, 515
CviQI	GTAC	2 cut(s)	206, 494
DdeI	CTNAG	3 cut(s)	142, 258, 359
DpnI	GATC	3 cut(s)	99, 117, 357
DpnII	GATC	3 cut(s)	97, 115, 355
Eco31I	GGTCTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	85, 363
FaeI	CATG	1 cut(s)	56
FaiI	YATR	5 cut(s)	54, 190, 192, 350, 380
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	52
FauI	CCCGC	2 cut(s)	22, 435
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	246, 249, 536
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	246, 249, 536
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	3 cut(s)	246, 249, 536
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	56
HinfI	GANTC	2 cut(s)	235, 293
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	3 cut(s)	124, 443, 530
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	1 cut(s)	597
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	56, 182, 212, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 388
HpyF3I	CTNAG	3 cut(s)	142, 258, 359
Hsp92II	CATG	1 cut(s)	56
Kzo9I	GATC	3 cut(s)	97, 115, 355
LmnI	GCTCC	1 cut(s)	548
LpnPI	CCDG	8 cut(s)	72, 88, 99, 109, 123, 228, 350, 377
Lsp1109I	GCAGC	3 cut(s)	235, 257, 547
MaeI	CTAG	1 cut(s)	443
MalI	GATC	3 cut(s)	99, 117, 357
MboI	GATC	3 cut(s)	97, 115, 355
MboII	GAAGA	1 cut(s)	500
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	57, 288, 375, 562
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	129, 395
MnlI	CCTC	4 cut(s)	24, 283, 286, 489
MseI	TTAA	2 cut(s)	36, 165
MspA1I	CMGCKG	2 cut(s)	248, 538
MspR9I	CCNGG	2 cut(s)	87, 365
MvaI	CCWGG	2 cut(s)	87, 365
MwoI	GCNNNNNNNGC	2 cut(s)	254, 388
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	3 cut(s)	97, 115, 355
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	247, 250, 537
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PshAI	GACNNNNGTC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	85, 363
PspGI	CCWGG	2 cut(s)	85, 363
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	207, 495
RsaNI	GTAC	2 cut(s)	206, 494
SaqAI	TTAA	2 cut(s)	36, 165
SatI	GCNGC	3 cut(s)	246, 249, 536
Sau3AI	GATC	3 cut(s)	97, 115, 355
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	87, 365
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	7 cut(s)	35, 133, 217, 250, 259, 393, 481
SfcI	CTRYAG	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	4 cut(s)	57, 288, 375, 562
SsiI	CCGC	4 cut(s)	15, 409, 428, 538
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	85, 363
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	229, 542, 566
TasI	AATT	4 cut(s)	57, 288, 375, 562
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	36, 165
Tru9I	TTAA	2 cut(s)	36, 165
TscAI	CASTG	2 cut(s)	107, 150
TseI	GCWGC	3 cut(s)	245, 248, 535
TspRI	CASTG	2 cut(s)	107, 150
XbaI	TCTAGA	1 cut(s)	442
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.