Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014495

Physical Location & Seq

Genomic Coordinates Reverse (-)

1321323 .. 1323445

Gene Structure 2123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAGCTCAAAGTATACGCGGATAGGATGTCACAGCCTTCCCGCGCAATTTTGATCTTCTGCAAGGTCAATGGTATAGAGTTCGAGGAGGTGCAAATGAACTTAGCCAAACGCCAGCAATTGTCTCCTGAATTCAAAAAGATAAACCCTATGGGACAAGTTCCCGCTATCGCTGATGGGAAGTTTAATCTGTTTGAGAGTCATGCAATTCTCGTCTATCTTGCTTGTGCGTTTCCTGGAATAGCAGATCATTGGTATCCTGCTGATCTTTTCAGGAGAGCTAAAATCAACTCAGTGTTGGATTGGCACCACTCCAACTTACGCCGTGGTGCAGCGGCATATGTTCTCAATACTGTACTTGCACCTGTGCTTGGAATTCCAGCGAGTCCACAAGCAGCTGTTGAAGCTGAGAGGCTTTTGTCTGCCTCTTTGTCAAAAATAGAGTCTATTTGGCTTAAAGGGAATGGGAAGTTCTTGTTGGGTGGCTTTCAACCATCCATAGCAGATCTCAGCCTGGTTTGTGAAATTATGCAACTTGAGCTTTTGGATGAGAACGACCGCAGTAGGATACTTGACCCGCACAAGAAAGTTCTACAGTGGATTGAGAATACAAAAAATGCGACAAGACCTCACTTTGAAGAAGTACATCAAATACTCTACAGAGCCAAAACTAGATTTCAAGAGCAGCGGTCGATGGGAGCAAACAATACCAATTCAAGCAAAAGGTTGAGTTTGCCTTCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N

Protein Analysis

250

Amino Acids

28.15

Weight (kDa)

9.44

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 75	1.7e-15	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	6 - 80	1.3e-08	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	2.5e-08	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41210
fragaria_vesca	FvH4_5g02100
malus_domestica	MD06G1081000.v1.1
prunus_persica	Prupe.5G098100_v2.0.a1
pyrus_communis	pycom06g07800
rosa_chinensis	RchiOBHm_Chr7g0198031 RchiOBHm_Chr7g0198101
rosa_laevigata	RLG00000003889 RLG00000003891
rosa_multiflora	Rmu_sc0000221.1_g000031
rosa_roxburghii	Rroxscaffold_3G00258000
rosa_rugosa	Rorug07G0045600
rosa_samantha	Rh7AG168900 Rh7BG172000 Rh7CG178500 Rh7DG171300
rosa_wichuraiana	Rw7G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	2 cut(s)	20, 45
AciI	CCGC	7 cut(s)	20, 43, 165, 335, 559, 578, 688
AcsI	RAATTY	2 cut(s)	131, 375
AfaI	GTAC	2 cut(s)	357, 645
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	7 cut(s)	136, 404, 491, 638, 680, 717, 741
AjnI	CCWGG	2 cut(s)	235, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	5 cut(s)	7, 281, 398, 407, 541
AluI	AGCT	5 cut(s)	7, 281, 398, 407, 541
Alw26I	GTCTC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	332, 395, 685
ApoI	RAATTY	2 cut(s)	131, 375
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	344, 407, 697
BccI	CCATC	3 cut(s)	170, 502, 688
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	237, 515
BciVI	GTATCC	2 cut(s)	267, 561
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	2 cut(s)	593, 658
BfuI	GTATCC	2 cut(s)	267, 561
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	4 cut(s)	333, 336, 396, 686
BlsI	GCNGC	4 cut(s)	334, 337, 397, 687
Bme1390I	CCNGG	2 cut(s)	237, 515
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	2 cut(s)	237, 515
BpuEI	CTTGAG	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	237, 515
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	33, 494, 553
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	3 cut(s)	306, 399, 523
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	344, 407, 697
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	20, 45
Bsh1285I	CGRYCG	2 cut(s)	559, 692
BshNI	GGYRCC	1 cut(s)	306
BsiEI	CGRYCG	2 cut(s)	559, 692
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	54, 247, 265, 505
BspACI	CCGC	7 cut(s)	20, 43, 165, 335, 559, 578, 688
BspCNI	CTCAG	3 cut(s)	305, 400, 522
BspFNI	CGCG	2 cut(s)	20, 45
BspLI	GGNNCC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	54, 247, 265, 505
BssNAI	GTATAC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	237, 515
Bst4CI	ACNGT	2 cut(s)	355, 597
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	4 cut(s)	103, 292, 408, 509
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	3 cut(s)	33, 494, 553
BstFNI	CGCG	2 cut(s)	20, 45
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	57, 250, 268, 508
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	4 cut(s)	54, 247, 265, 505
BstMCI	CGRYCG	2 cut(s)	559, 692
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 538
BstNI	CCWGG	2 cut(s)	237, 515
BstSCI	CCNGG	2 cut(s)	235, 513
BstSFI	CTRYAG	2 cut(s)	593, 658
BstUI	CGCG	2 cut(s)	20, 45
BstV1I	GCAGC	3 cut(s)	344, 407, 697
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BstZ17I	GTATAC	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	267, 561
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	33, 494, 553
BtsIMutI	CAGTG	2 cut(s)	300, 602
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	356, 644
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	356, 644
DdeI	CTNAG	4 cut(s)	103, 292, 408, 509
DpnI	GATC	4 cut(s)	56, 249, 267, 507
DpnII	GATC	4 cut(s)	54, 247, 265, 505
EcoRI	GAATTC	2 cut(s)	131, 375
EcoRII	CCWGG	2 cut(s)	235, 513
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	16, 77, 152, 204, 340, 342, 500, 530
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	1 cut(s)	202
FauI	CCCGC	3 cut(s)	50, 172, 585
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	333, 336, 396, 686
FokI	GGATG	3 cut(s)	40, 481, 560
Fsp4HI	GCNGC	4 cut(s)	333, 336, 396, 686
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	333, 336, 396, 686
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	199, 385, 443
Hpy166II	GTNNAC	2 cut(s)	16, 389
Hpy188III	TCNNGA	3 cut(s)	128, 274, 680
Hpy8I	GTNNAC	2 cut(s)	16, 389
HpyAV	CCTTC	2 cut(s)	48, 747
HpyCH4III	ACNGT	2 cut(s)	355, 597
HpyCH4V	TGCA	6 cut(s)	63, 94, 206, 332, 362, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 538
HpyF3I	CTNAG	4 cut(s)	103, 292, 408, 509
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	54, 247, 265, 505
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	3 cut(s)	344, 407, 697
MaeI	CTAG	1 cut(s)	672
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	4 cut(s)	56, 249, 267, 507
MboI	GATC	4 cut(s)	54, 247, 265, 505
MboII	GAAGA	2 cut(s)	49, 650
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	7 cut(s)	48, 119, 131, 207, 375, 525, 712
MlyI	GAGTC	3 cut(s)	208, 394, 452
MmeI	TCCRAC	2 cut(s)	279, 339
MnlI	CCTC	5 cut(s)	79, 82, 405, 436, 639
MseI	TTAA	2 cut(s)	186, 456
MspA1I	CMGCKG	3 cut(s)	335, 398, 688
MspR9I	CCNGG	2 cut(s)	237, 515
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	237, 515
MvnI	CGCG	2 cut(s)	20, 45
MwoI	GCNNNNNNNGC	2 cut(s)	404, 538
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	4 cut(s)	54, 247, 265, 505
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	334, 337, 397, 687
PleI	GAGTC	3 cut(s)	207, 393, 451
PpsI	GAGTC	3 cut(s)	207, 393, 451
Psp6I	CCWGG	2 cut(s)	235, 513
PspGI	CCWGG	2 cut(s)	235, 513
PspN4I	GGNNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	357, 645
RsaNI	GTAC	2 cut(s)	356, 644
SaqAI	TTAA	2 cut(s)	186, 456
SatI	GCNGC	4 cut(s)	333, 336, 396, 686
Sau3AI	GATC	4 cut(s)	54, 247, 265, 505
SchI	GAGTC	3 cut(s)	208, 394, 452
ScrFI	CCNGG	2 cut(s)	237, 515
SfcI	CTRYAG	2 cut(s)	593, 658
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	7 cut(s)	48, 119, 131, 207, 375, 525, 712
SsiI	CCGC	7 cut(s)	20, 43, 165, 335, 559, 578, 688
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	2 cut(s)	235, 513
TaaI	ACNGT	2 cut(s)	355, 597
TaqI	TCGA	2 cut(s)	84, 692
TasI	AATT	7 cut(s)	48, 119, 131, 207, 375, 525, 712
TatI	WGTACW	2 cut(s)	355, 643
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	186, 456
Tru9I	TTAA	2 cut(s)	186, 456
TscAI	CASTG	2 cut(s)	300, 602
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	3 cut(s)	332, 395, 685
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	17, 113
TspRI	CASTG	2 cut(s)	300, 602
XapI	RAATTY	2 cut(s)	131, 375
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.