Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014495

Physical Location & Seq

Genomic Coordinates Reverse (-)

52372712 .. 52375248

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAGCTCAAACTATACGTGGATAGAATGTCACAACCTTCGCGTGCAATTTTGATCTTCTGCAAGGTCAATGGTATAGAATTCGAGGAGGTGCAAATCAGCCTAGCCAAGCGCCAGCAAAAGTCACCTGATTTCAAAAAAATAAACCCTATGGGACAAGTTCCGGCTATTGCTGATGGGAGGTTTAATCTGTTTGAAAGTCATGCAATTCTTGTCTATCTTGCTTGTGCGTTTCCTGGAGTAGCAGATCACTGGTATCCTGCTGATCTTTTCAGGAGAGCTAAAATCAACTCAGTGTTGGATTGGCACCACTCTAACTTACGCCGTGGTGCAATGACATATGTTGTAAATACCGTACTTGCACCTGTGTTTGGATTTCGATTGAATCCACAAGCAGCTGCTGAAGCTGAGAAACTTCTGTTGTCCTCTTTGTCAAAAATTGAGTCTATTTGGCTCAAAGGGAACGGAAAGTTCTTGTTGGGTGGCTTTCAACCATCCATAGCAGATCTCAGCCTGGTTTGTGAAATTATGCAACTTGAGCCAGAAGCTGTGTCTTTCTACCTGAAGATATCTAAGCGCCTCTATATAATTCTTGTGAAGTCTACTTTGGTTGTGGAAGGGGATCTCTTGTTCCAGTGTTTTGTTCTTTTGGACGAGAACGACCGCAGTCGGATACTTGGCCCGCACCAGAAAGTCCTAGAGTGGATTGAGAATACAAAAAATGCGACAAGACCTCACTTTGAAGAAGTACATCAAGTCCTCTACAGAGCCAAAACGAGATTTCAAGAGCAGCGATCGATGGGAGGAAACAACACTAATTCGAGCAAAAGATTGGGTTTGCCTTCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N

Protein Analysis

284

Amino Acids

32.32

Weight (kDa)

9.46

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 75	4.4e-15	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 80	4.6e-09	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	1.7e-09	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41210
fragaria_vesca	FvH4_5g02100
malus_domestica	MD06G1081000.v1.1
prunus_persica	Prupe.5G098100_v2.0.a1
pyrus_communis	pycom06g07800
rosa_chinensis	RchiOBHm_Chr7g0198031 RchiOBHm_Chr7g0198101
rosa_laevigata	RLG00000003889 RLG00000003891
rosa_multiflora	Rmu_sc0000221.1_g000031
rosa_roxburghii	Rroxscaffold_3G00258000
rosa_rugosa	Rorug07G0045600
rosa_samantha	Rh7AG168900 Rh7BG172000 Rh7CG178500 Rh7DG171300
rosa_wichuraiana	Rw7G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	602
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	664, 683
AclWI	GGATC	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	2 cut(s)	423, 584
AfaI	GTAC	2 cut(s)	357, 750
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	7 cut(s)	136, 197, 385, 491, 743, 785, 846
AjnI	CCWGG	2 cut(s)	235, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	5 cut(s)	7, 281, 398, 407, 548
AluI	AGCT	5 cut(s)	7, 281, 398, 407, 548
AlwI	GGATC	1 cut(s)	630
AlwNI	CAGNNNCTG	2 cut(s)	401, 548
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	3 cut(s)	395, 398, 790
ApoI	RAATTY	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	2 cut(s)	114, 579
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	385, 407, 802
BccI	CCATC	3 cut(s)	170, 502, 793
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	237, 515
BciVI	GTATCC	2 cut(s)	267, 666
BfaI	CTAG	2 cut(s)	104, 698
BfmI	CTRYAG	1 cut(s)	763
BfoI	RGCGCY	2 cut(s)	115, 580
BfuI	GTATCC	2 cut(s)	267, 666
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	3 cut(s)	396, 399, 791
BlsI	GCNGC	3 cut(s)	397, 400, 792
Bme1390I	CCNGG	2 cut(s)	237, 515
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	2 cut(s)	237, 515
BoxI	GACNNNNGTC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	557
Bsa29I	ATCGAT	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	257, 634
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	237, 515
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	3 cut(s)	306, 399, 523
BseNI	ACTGG	2 cut(s)	257, 634
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	385, 407, 802
Bsh1236I	CGCG	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	664, 797
BshFI	GGCC	1 cut(s)	681
BshNI	GGYRCC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	797
BsiEI	CGRYCG	2 cut(s)	664, 797
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	681
Bsp143I	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
BspACI	CCGC	2 cut(s)	664, 683
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	3 cut(s)	305, 400, 522
BspDI	ATCGAT	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	257, 634
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
Bst2UI	CCWGG	2 cut(s)	237, 515
Bst4CI	ACNGT	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	45, 116, 683
BstDEI	CTNAG	4 cut(s)	292, 408, 509, 573
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	494
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	2 cut(s)	115, 580
BstHHI	GCGC	2 cut(s)	114, 579
BstKTI	GATC	6 cut(s)	57, 250, 268, 508, 625, 797
BstMBI	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
BstMCI	CGRYCG	2 cut(s)	664, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 538
BstNI	CCWGG	2 cut(s)	237, 515
BstPAI	GACNNNNGTC	1 cut(s)	666
BstSCI	CCNGG	2 cut(s)	235, 513
BstSFI	CTRYAG	1 cut(s)	763
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	385, 407, 802
BstX2I	RGATCY	2 cut(s)	505, 622
BstYI	RGATCY	2 cut(s)	505, 622
Bsu15I	ATCGAT	1 cut(s)	797
BsuI	GTATCC	2 cut(s)	267, 666
BsuRI	GGCC	1 cut(s)	681
BsuTUI	ATCGAT	1 cut(s)	797
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	250, 300, 641
Cac8I	GCNNGC	3 cut(s)	45, 116, 683
CaiI	CAGNNNCTG	2 cut(s)	401, 548
CfoI	GCGC	2 cut(s)	114, 579
Cfr13I	GGNCC	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	797
Csp6I	GTAC	2 cut(s)	356, 749
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	356, 749
DdeI	CTNAG	4 cut(s)	292, 408, 509, 573
DpnI	GATC	6 cut(s)	56, 249, 267, 507, 624, 796
DpnII	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
Eco32I	GATATC	1 cut(s)	570
Eco57I	CTGAAG	2 cut(s)	423, 584
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	235, 513
EcoRV	GATATC	1 cut(s)	570
FaeI	CATG	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	3 cut(s)	396, 399, 791
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	3 cut(s)	396, 399, 791
FspBI	CTAG	2 cut(s)	104, 698
GlaI	GCGC	2 cut(s)	113, 578
GluI	GCNGC	3 cut(s)	396, 399, 791
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	2 cut(s)	115, 580
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	2 cut(s)	114, 579
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	112, 577
HinP1I	GCGC	2 cut(s)	112, 577
HinfI	GANTC	2 cut(s)	385, 443
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	2 cut(s)	274, 785
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	3 cut(s)	48, 611, 852
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	7 cut(s)	47, 63, 94, 206, 332, 362, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 538
HpyF3I	CTNAG	4 cut(s)	292, 408, 509, 573
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	112, 577
Kzo9I	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
Lsp1109I	GCAGC	3 cut(s)	385, 407, 802
MaeI	CTAG	2 cut(s)	104, 698
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	30, 123
MalI	GATC	6 cut(s)	56, 249, 267, 507, 624, 796
MboI	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
MboII	GAAGA	3 cut(s)	49, 577, 755
MflI	RGATCY	2 cut(s)	505, 622
MluCI	AATT	7 cut(s)	48, 80, 207, 438, 525, 588, 817
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	279, 650
MnlI	CCTC	8 cut(s)	79, 82, 174, 436, 590, 744, 770, 797
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	237, 515
MvaI	CCWGG	2 cut(s)	237, 515
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	404, 538
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	2 cut(s)	30, 123
PfeI	GAWTC	1 cut(s)	385
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	397, 400, 792
Ple19I	CGATCG	1 cut(s)	797
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	235, 513
PspGI	CCWGG	2 cut(s)	235, 513
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	680
PstNI	CAGNNNCTG	2 cut(s)	401, 548
PsuI	RGATCY	2 cut(s)	505, 622
PvuI	CGATCG	1 cut(s)	797
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	357, 750
RsaNI	GTAC	2 cut(s)	356, 749
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	396, 399, 791
Sau3AI	GATC	6 cut(s)	54, 247, 265, 505, 622, 794
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	237, 515
SfcI	CTRYAG	1 cut(s)	763
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	7 cut(s)	48, 80, 207, 438, 525, 588, 817
SsiI	CCGC	2 cut(s)	664, 683
SspMI	CTAG	2 cut(s)	104, 698
StyD4I	CCNGG	2 cut(s)	235, 513
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	4 cut(s)	84, 379, 797, 821
TasI	AATT	7 cut(s)	48, 80, 207, 438, 525, 588, 817
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	3 cut(s)	257, 300, 641
TseFI	GTSAC	2 cut(s)	30, 123
TseI	GCWGC	3 cut(s)	395, 398, 790
Tsp45I	GTSAC	2 cut(s)	30, 123
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	3 cut(s)	257, 300, 641
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	2 cut(s)	104, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.