AT5G41270

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013886
Physical Location & Seq
Forward (+)
16507662 .. 16509034
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41270.1

Sequence Viewer

Length: 777 bp
ATGGGCAAACGAGGACCGAAGAAGCTTACAAACACTCAAGGAGGAGGAGGACCTAATCTCAAATCTGTACTGAGACATGAGCACTTGAAGAATCTCGCTCTCTGGTCTTCCACCGGAGATACTCCTATCCCGTCTCTTGCTTCATTACTCGGTCGACGTCTCGCTGCCGACACTGAATCCACCGGAATCACTACTGATCCCGATCTCGTCTCTTGTCAAAGGTGTGAGACCATTCTTAAGCCTGGATTCAATTGCAATGTTAGAATAGAGAAGGTTTCTGCTAATGTGAAGAAGAAACGTAATAGGTGCAAGAAGTCTAACAACATCTGTTTCCCTCAGAACAATGTAGTTTACCATTGCAATTTCTGTTCTCACCGGAACCTTAAGAGAGGTACTGCTAAAGGTCAGATGAAAGAGCTTTACCCGTTCAAGCCGAAAACCGCTCGTTCGTCGCGTCCGAAGATCAAGAAAGAGATGACGATGCCTCAAGAAATCCAAAGTAACATGCTTTCTTCACCGGAGAGAAGTGTGAAAGATCAGGTGGAGGAGAAGAGTGTTGGGGATACACCGAAGCCGATGATGCTTACATTGGAGAGGGATAGGAGAATACGAAAACCCAAAAGTAAGAAACCGAGTGAACCTCAAAGTGTTCCTGAGAAAACAGTTGGTGGATCAAATAAGAGGAAGAGAAAATCACCTTGGACAAGTATGAAGGAGATAGCTGAGACAAACAAGAGTTCTAAAGCTGGAAACTTTAAAATACCTTTTCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

258

Amino Acids

28.94

Weight (kDa)

10.27

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 25 - 124 6.8e-12 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 154
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 441
AclWI GGATC 2 cut(s) 191, 679
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 2 cut(s) 69, 394
AflII CTTAAG 2 cut(s) 236, 383
AgsI TTSAA 3 cut(s) 88, 250, 430
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 4 cut(s) 25, 418, 722, 746
AluI AGCT 4 cut(s) 25, 418, 722, 746
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 6 cut(s) 67, 138, 164, 214, 221, 719
AlwI GGATC 2 cut(s) 191, 679
ApeKI GCWGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 14, 50
AsuHPI GGTGA 3 cut(s) 365, 507, 687
AvaII GGWCC 2 cut(s) 14, 50
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 556
BcoDI GTCTC 6 cut(s) 67, 138, 164, 214, 221, 719
BfrI CTTAAG 2 cut(s) 236, 383
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 14, 50
BmgT120I GGNCC 2 cut(s) 14, 50
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 471, 570
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 625, 657
BpuEI CTTGAG 2 cut(s) 21, 471
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 698
BsaWI WCCGGW 4 cut(s) 113, 182, 375, 517
Bse3DI GCAATG 2 cut(s) 262, 355
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 698
BseJI GATNNNNATC 1 cut(s) 201
BseMI GCAATG 2 cut(s) 262, 355
BseMII CTCAG 4 cut(s) 62, 350, 645, 714
BseRI GAGGAG 3 cut(s) 57, 60, 560
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 4 cut(s) 114, 183, 376, 518
BsmAI GTCTC 6 cut(s) 67, 138, 164, 214, 221, 719
BsmBI CGTCTC 3 cut(s) 138, 164, 214
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 5 cut(s) 196, 202, 462, 535, 671
BspACI CCGC 1 cut(s) 441
BspCNI CTCAG 4 cut(s) 63, 349, 646, 715
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 2 cut(s) 191, 679
BspTI CTTAAG 2 cut(s) 236, 383
BspTNI GGTCTC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 262, 355
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 5 cut(s) 196, 202, 462, 535, 671
BssNI GRCGYC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 545, 680
BstACI GRCGYC 1 cut(s) 157
BstAFI CTTAAG 2 cut(s) 236, 383
BstDEI CTNAG 4 cut(s) 71, 336, 654, 723
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 5 cut(s) 199, 205, 465, 538, 674
BstMAI GTCTC 6 cut(s) 67, 138, 164, 214, 221, 719
BstMBI GATC 5 cut(s) 196, 202, 462, 535, 671
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 241
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 99
BsuI GTATCC 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 14, 50
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 68, 393
CviAII CATG 2 cut(s) 77, 505
CviJI RGCY 7 cut(s) 25, 241, 418, 433, 574, 722, 746
CviKI_1 RGCY 7 cut(s) 25, 241, 418, 433, 574, 722, 746
CviQI GTAC 2 cut(s) 68, 393
DdeI CTNAG 4 cut(s) 71, 336, 654, 723
DpnI GATC 5 cut(s) 198, 204, 464, 537, 673
DpnII GATC 5 cut(s) 196, 202, 462, 535, 671
DraI TTTAAA 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 545, 680
EarI CTCTTC 2 cut(s) 545, 680
Eco130I CCWWGG 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 14, 50
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
Esp3I CGTCTC 3 cut(s) 138, 164, 214
FaeI CATG 2 cut(s) 80, 508
FaiI YATR 3 cut(s) 78, 506, 710
FatI CATG 2 cut(s) 76, 504
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HapII CCGG 4 cut(s) 114, 183, 376, 518
HgaI GACGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 2 cut(s) 80, 508
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 4 cut(s) 91, 176, 186, 246
HpaII CCGG 4 cut(s) 114, 183, 376, 518
HphI GGTGA 3 cut(s) 365, 507, 687
Hpy166II GTNNAC 3 cut(s) 155, 352, 638
Hpy188I TCNGA 3 cut(s) 339, 408, 459
Hpy188III TCNNGA 4 cut(s) 200, 466, 488, 653
Hpy8I GTNNAC 3 cut(s) 155, 352, 638
Hpy99I CGWCG 2 cut(s) 159, 454
HpyAV CCTTC 2 cut(s) 265, 706
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 157, 298
HpyCH4V TGCA 3 cut(s) 255, 309, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 4 cut(s) 71, 336, 654, 723
HpySE526I ACGT 2 cut(s) 157, 298
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 2 cut(s) 80, 508
Kzo9I GATC 5 cut(s) 196, 202, 462, 535, 671
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 471, 570
MaeII ACGT 2 cut(s) 157, 298
MaeIII GTNAC 1 cut(s) 500
MalI GATC 5 cut(s) 198, 204, 464, 537, 673
MbiI CCGCTC 1 cut(s) 443
MboI GATC 5 cut(s) 196, 202, 462, 535, 671
MboII GAAGA 9 cut(s) 31, 99, 100, 301, 304, 472, 504, 562, 697
MfeI CAATTG 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 250, 361
MseI TTAA 3 cut(s) 237, 384, 756
MspCI CTTAAG 2 cut(s) 236, 383
MspI CCGG 4 cut(s) 114, 183, 376, 518
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 580
NdeII GATC 5 cut(s) 196, 202, 462, 535, 671
NlaIII CATG 2 cut(s) 80, 508
NlaIV GGNNCC 1 cut(s) 380
NspI RCATGY 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 451, 455
PfeI GAWTC 4 cut(s) 91, 176, 186, 246
PkrI GCNGC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 2 cut(s) 14, 50
PspPPI RGGWCCY 1 cut(s) 50
RsaI GTAC 2 cut(s) 69, 394
RsaNI GTAC 2 cut(s) 68, 393
SalI GTCGAC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 237, 384, 756
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 5 cut(s) 196, 202, 462, 535, 671
Sau96I GGNCC 2 cut(s) 14, 50
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 2 cut(s) 471, 570
SinI GGWCC 2 cut(s) 14, 50
SmlI CTYRAG 4 cut(s) 36, 236, 383, 486
SmoI CTYRAG 4 cut(s) 36, 236, 383, 486
Sse9I AATT 2 cut(s) 250, 361
SsiI CCGC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 160, 301
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 2 cut(s) 31, 140
TasI AATT 2 cut(s) 250, 361
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 4 cut(s) 91, 176, 186, 246
Tru1I TTAA 3 cut(s) 237, 384, 756
Tru9I TTAA 3 cut(s) 237, 384, 756
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 132, 425, 725
TspRI CASTG 1 cut(s) 178
Vha464I CTTAAG 2 cut(s) 236, 383
VpaK11BI GGWCC 2 cut(s) 14, 50
XceI RCATGY 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 154
ZraI GACGTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.