Rw7G014530

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013886
Physical Location & Seq
Reverse (-)
14226927 .. 14230019
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014530.1

Sequence Viewer

Length: 861 bp
ATGAGCAAGAGAGGAGGAGCCAAGAGAGCATCAAACACAACATTTGGGTCAAACAATCCGATTTCACTGAGAGAGGACAAAAACCAAAGCAAGGGAGGCTCCACCAACCCCAAGGCTGCATTGAAGCTCGAGCACTTGCAGAGGCTAGCTTTATGGACCAGTGGGGAAGCTTCTATTCCTTCTTTGGGGGCCTTCTTTGGGCAGAAGTTAGCTTCTACTCAAGAGGGTCTGGATGTGCCCCCTGACCCTTCTCTGATTTCTTGCCAGAGATGTGAAACTATTCTTCAGCCTGGCTTCAACTGCACTATTCGCATTGAAAAAAATAGAGCAAAGGCAAGACGAAGAAGTAAGAAACCCGCTAATTTCACTTTCACTCAGAACAATGTAGTGTATACATGTCACTTCTGTTCTGAACGGAATGTGAAGAGAGGGACTTCACGTGGACATATGAAAGCGATATGCCCCCCGAAGATCAAAAAAGCTTCAAATTTGAAACCTGCTAAATCCATTTCTGAGAAGTTTGCGACCCCAAAGAAGAGCACTGCTGGTGAGGATAACATTAGTAAATTGAAATCCGGAACTCCAACTGTGGAGGAAGAGATTCCTACTGCGGATAGCCCCACAACTCCAATGGTGAAACCCGCAATTACGTTGTTGGACTCAAAGAGAAAAAAGAGAAACAAATCGGCGTCCAAGAAACGATCTGAACCCGAAAACAGTCCCGCCCCAGCAGATGCAGAGAACTCTTTCAGCACGACAAACAAACGGAGGAGAAAATCATGGACTAGTTTAAAGGAACTCGCTGAGAGAAGTGAGCAGAAGAAAAACATCAGTGATCTGTCAATCCCTTTCTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

286

Amino Acids

31.53

Weight (kDa)

10.2

Isoelectric Point (pI)

60.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 43 - 137 2.1e-13 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 392
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 4 cut(s) 357, 611, 642, 723
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 269
AcvI CACGTG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 689
AfiI CCNNNNNNNGG 3 cut(s) 91, 185, 198
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 6 cut(s) 124, 298, 317, 486, 493, 571
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 127, 149, 170, 212, 482
AluI AGCT 5 cut(s) 127, 149, 170, 212, 482
Alw21I GWGCWC 2 cut(s) 135, 542
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 3 cut(s) 279, 600, 746
AspS9I GGNCC 2 cut(s) 156, 189
AsuHPI GGTGA 2 cut(s) 560, 646
AsuNHI GCTAGC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 240
BbrPI CACGTG 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 135, 542
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 291
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 2 cut(s) 146, 786
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 156, 189
BmiI GGNNCC 3 cut(s) 19, 100, 190
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 38, 724
BmtI GCTAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 689
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 185, 198
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 3 cut(s) 91, 185, 198
BseMII CTCAG 4 cut(s) 59, 389, 504, 795
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 3 cut(s) 27, 30, 784
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 135, 542
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 2 cut(s) 445, 705
BslI CCNNNNNNNGG 3 cut(s) 91, 185, 198
BsmFI GGGAC 2 cut(s) 445, 705
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 135, 240, 542
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 471, 701, 835
BspACI CCGC 4 cut(s) 357, 611, 642, 723
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 4 cut(s) 60, 388, 505, 796
BspEI TCCGGA 1 cut(s) 575
BspLI GGNNCC 3 cut(s) 19, 100, 190
BspMI ACCTGC 1 cut(s) 505
BspOI GCTAGC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 471, 701, 835
BssNAI GTATAC 1 cut(s) 393
BssNI GRCGYC 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 589, 719
Bst6I CTCTTC 3 cut(s) 419, 530, 591
BstACI GRCGYC 1 cut(s) 689
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 4 cut(s) 68, 375, 513, 804
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 3 cut(s) 474, 704, 838
BstMBI GATC 3 cut(s) 471, 701, 835
BstMWI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 103
BstZ17I GTATAC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 4 cut(s) 65, 166, 540, 838
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 156, 189
CseI GACGC 1 cut(s) 678
CviAII CATG 2 cut(s) 396, 780
DdeI CTNAG 4 cut(s) 68, 375, 513, 804
DpnI GATC 3 cut(s) 473, 703, 837
DpnII GATC 3 cut(s) 471, 701, 835
DraI TTTAAA 1 cut(s) 792
Eam1104I CTCTTC 3 cut(s) 419, 530, 591
EarI CTCTTC 3 cut(s) 419, 530, 591
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 399, 783
FaiI YATR 8 cut(s) 154, 393, 397, 447, 449, 460, 781, 857
FaqI GGGAC 2 cut(s) 445, 705
FatI CATG 2 cut(s) 395, 779
FauI CCCGC 3 cut(s) 364, 649, 730
FauNDI CATATG 1 cut(s) 447
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 146, 786
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 731
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 576
HgaI GACGC 1 cut(s) 678
Hin1I GRCGYC 1 cut(s) 689
Hin1II CATG 2 cut(s) 399, 783
HindIII AAGCTT 2 cut(s) 168, 480
HinfI GANTC 2 cut(s) 601, 659
HpaII CCGG 1 cut(s) 576
HphI GGTGA 2 cut(s) 560, 646
Hpy166II GTNNAC 2 cut(s) 393, 443
Hpy188I TCNGA 6 cut(s) 60, 255, 378, 412, 514, 706
Hpy188III TCNNGA 3 cut(s) 221, 230, 576
Hpy8I GTNNAC 2 cut(s) 393, 443
HpyAV CCTTC 3 cut(s) 189, 202, 258
HpyCH4III ACNGT 2 cut(s) 589, 719
HpyCH4IV ACGT 2 cut(s) 439, 650
HpyCH4V TGCA 4 cut(s) 119, 139, 303, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
HpyF3I CTNAG 4 cut(s) 68, 375, 513, 804
HpySE526I ACGT 2 cut(s) 439, 650
Hsp92I GRCGYC 1 cut(s) 689
Hsp92II CATG 2 cut(s) 399, 783
Kpn2I TCCGGA 1 cut(s) 575
Kzo9I GATC 3 cut(s) 471, 701, 835
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 2 cut(s) 17, 104
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 38, 724
MaeI CTAG 2 cut(s) 146, 786
MaeII ACGT 2 cut(s) 439, 650
MaeIII GTNAC 1 cut(s) 398
MalI GATC 3 cut(s) 473, 703, 837
MboI GATC 3 cut(s) 471, 701, 835
MboII GAAGA 7 cut(s) 275, 354, 436, 481, 547, 608, 832
MhlI GDGCHC 3 cut(s) 135, 240, 542
MluCI AATT 4 cut(s) 361, 487, 566, 645
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 2 cut(s) 608, 636
MroI TCCGGA 1 cut(s) 575
MroXI GAANNNNTTC 3 cut(s) 279, 600, 746
MseI TTAA 1 cut(s) 791
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
NdeI CATATG 1 cut(s) 447
NdeII GATC 3 cut(s) 471, 701, 835
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 399, 783
NlaIV GGNNCC 3 cut(s) 19, 100, 190
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 128
PciI ACATGT 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 530
PdmI GAANNNNTTC 3 cut(s) 279, 600, 746
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 653
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 1 cut(s) 653
Ppu21I YACGTR 1 cut(s) 440
PscI ACATGT 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 289
PspCI CACGTG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 19, 100, 190
PspPI GGNCC 2 cut(s) 156, 189
PspXI VCTCGAGB 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 1 cut(s) 791
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 471, 701, 835
Sau96I GGNCC 2 cut(s) 156, 189
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 135, 240, 542
SetI ASST 8 cut(s) 129, 151, 172, 214, 442, 484, 499, 653
SfaNI GCATC 2 cut(s) 38, 724
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 219
SmoI CTYRAG 2 cut(s) 128, 219
SpeI ACTAGT 1 cut(s) 785
Sse9I AATT 4 cut(s) 361, 487, 566, 645
SsiI CCGC 4 cut(s) 357, 611, 642, 723
SspMI CTAG 2 cut(s) 146, 786
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 589, 719
TaiI ACGT 2 cut(s) 442, 653
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 361, 487, 566, 645
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 791
Tru9I TTAA 1 cut(s) 791
TscAI CASTG 4 cut(s) 72, 166, 547, 838
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 2 cut(s) 430, 781
TspRI CASTG 4 cut(s) 72, 166, 547, 838
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 392
XmnI GAANNNNTTC 3 cut(s) 279, 600, 746
XspI CTAG 2 cut(s) 146, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.