MD14G1104200.v1.1

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0013886
Physical Location & Seq
Forward (+)
16172956 .. 16175745
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1104200.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGGCAGGAGAGGAGGAGGAGGAGGAGGAGCTCAAAGGGCGCCAAACATCTCATTCGCGTCTACCAATAACATATCACTGAGAGAAGAACTGACCGGGAAAAAGCAGACCAAGGGCGGCTTCTCCATCAATGCCAAGGCCGCGCTGAAGCTCGAGCACTTGCAGAGACTTGCTGTGTGGACTGGCGCGGAGACTTCTGTTCCTTCTTTGGGTGCATTCTTTGGGTGCACCTTGGCCGCTGCCCAAGAGGCCATCGGTGTGCCCCCTAAACCTTCTCTCTTCCCTTGCCAGAGATGTGAAACAGTTCTTCAGCCTGGCTTCAACTGCACTGTTCGAATTGAGAAAAATAGAGCAAAGGTACGACGACGAAGTAAGAAGATTACTAATTTCTCTCGAAACAATGTAGTGTATACATGCCACTTCTGTTCACACCGGAATGTGAAGAGAGGGACTCCAAATGGACATATGAAAATGATATGCCCCCCTAAGGCCAAAACAACTTCGAATCTAAAACTTAAGTCCATCTCCAAGAAGTTTATCAACTCAAAGGAGATCACAGCAGGTGATGAGGTTAGTAAAGCGGAGGAGATAGCTCCTTCCGCAGGCAGAGAGATTCCTGCAGTCAACACTCTTGCAGGCGAAGGTGAGGTTAGTAAGGCGAATGAAATAGCTCCTTCAGCAGGCACAGAGATTCCTGGCGTGGATACTCCTGCAACTCCAGCGGTGAAGACTGGAATTGCTTTGTTGTTGGGAGGGAAGAAGAGAAGGAGAAACAATTCGGCGACCAAGAAACCAGCTGAACGTGAGAGCAGTCCCACCTCAATAGCTGAAAACACAACTAGCACGTCAAACAAAAGGAGGAGAAAATCATGGACCAGTTTGAAGGAGATTGCTATACGCAGTGATCACAATAACATCCGAAAAATCAGTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

313

Amino Acids

33.57

Weight (kDa)

10.43

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 51 - 143 1.8e-12 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 2 cut(s) 62, 410
AccII CGCG 3 cut(s) 59, 143, 188
AciI CCGC 7 cut(s) 117, 141, 188, 237, 581, 600, 722
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 3 cut(s) 167, 293, 660
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 4 cut(s) 209, 487, 602, 680
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 2 cut(s) 322, 883
AjiI CACGTC 1 cut(s) 846
AjnI CCWGG 2 cut(s) 313, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 6 cut(s) 32, 151, 593, 671, 797, 827
AluI AGCT 6 cut(s) 32, 151, 593, 671, 797, 827
Alw21I GWGCWC 3 cut(s) 34, 159, 230
Alw26I GTCTC 2 cut(s) 160, 185
Alw44I GTGCAC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 4 cut(s) 138, 234, 249, 489
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 239
Asp700I GAANNNNTTC 2 cut(s) 303, 775
AspLEI GCGC 3 cut(s) 43, 145, 188
AspS9I GGNCC 1 cut(s) 873
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 3 cut(s) 575, 656, 736
AsuII TTCGAA 2 cut(s) 334, 503
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 873
AxyI CCTNAGG 1 cut(s) 486
BaeGI GKGCMC 2 cut(s) 230, 264
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 734
Bbv12I GWGCWC 3 cut(s) 34, 159, 230
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 134, 260, 530
BciT130I CCWGG 2 cut(s) 315, 696
BciVI GTATCC 1 cut(s) 697
BclI TGATCA 1 cut(s) 904
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 160, 185
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 551
BfuI GTATCC 1 cut(s) 697
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 4 cut(s) 118, 141, 237, 240
BlsI GCNGC 4 cut(s) 119, 142, 238, 241
Bme1390I CCNGG 3 cut(s) 97, 315, 696
Bme18I GGWCC 1 cut(s) 873
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 846
BmgT120I GGNCC 1 cut(s) 873
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 3 cut(s) 97, 315, 696
BpiI GAAGAC 1 cut(s) 734
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 1 cut(s) 702
Bpu14I TTCGAA 2 cut(s) 334, 503
BpuMI CCSGG 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 111, 135, 231
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 487, 602, 680
Bse1I ACTGG 3 cut(s) 187, 736, 876
Bse21I CCTNAGG 1 cut(s) 486
BseBI CCWGG 2 cut(s) 315, 696
BseDI CCNNGG 3 cut(s) 111, 135, 231
BseGI GGATG 1 cut(s) 915
BseLI CCNNNNNNNGG 4 cut(s) 209, 487, 602, 680
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 187, 736, 876
BseRI GAGGAG 8 cut(s) 27, 30, 33, 36, 39, 42, 599, 874
BseSI GKGCMC 2 cut(s) 230, 264
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 3 cut(s) 59, 143, 188
BshFI GGCC 4 cut(s) 140, 236, 251, 491
BshNI GGYRCC 1 cut(s) 40
BsiHKAI GWGCWC 3 cut(s) 34, 159, 230
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 96, 433
BslFI GGGAC 2 cut(s) 463, 798
BslI CCNNNNNNNGG 4 cut(s) 209, 487, 602, 680
BsmAI GTCTC 2 cut(s) 160, 185
BsmFI GGGAC 2 cut(s) 463, 798
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 4 cut(s) 140, 236, 251, 491
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 2 cut(s) 334, 503
Bsp1286I GDGCHC 4 cut(s) 34, 159, 230, 264
Bsp143I GATC 2 cut(s) 552, 904
BspACI CCGC 7 cut(s) 117, 141, 188, 237, 581, 600, 722
BspANI GGCC 4 cut(s) 140, 236, 251, 491
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 3 cut(s) 59, 143, 188
BspLI GGNNCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 551
BspT104I TTCGAA 2 cut(s) 334, 503
BspT107I GGYRCC 1 cut(s) 40
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 3 cut(s) 187, 736, 876
BssECI CCNNGG 3 cut(s) 111, 135, 231
BssMI GATC 2 cut(s) 552, 904
BssNAI GTATAC 1 cut(s) 411
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 3 cut(s) 111, 135, 231
Bst1107I GTATAC 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 315, 696
Bst4CI ACNGT 2 cut(s) 304, 331
Bst6I CTCTTC 3 cut(s) 284, 437, 755
BstACI GRCGYC 1 cut(s) 41
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 2 cut(s) 334, 503
BstC8I GCNNGC 3 cut(s) 604, 637, 682
BstDEI CTNAG 2 cut(s) 80, 486
BstENI CCTNNNNNAGG 2 cut(s) 600, 678
BstF5I GGATG 1 cut(s) 915
BstFNI CGCG 3 cut(s) 59, 143, 188
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 3 cut(s) 43, 145, 188
BstKTI GATC 2 cut(s) 555, 907
BstMAI GTCTC 2 cut(s) 160, 185
BstMBI GATC 2 cut(s) 552, 904
BstMWI GCNNNNNNNGC 7 cut(s) 38, 140, 248, 324, 599, 677, 719
BstNI CCWGG 2 cut(s) 315, 696
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 3 cut(s) 95, 313, 694
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 2 cut(s) 230, 264
BstUI CGCG 3 cut(s) 59, 143, 188
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 734
BstZ17I GTATAC 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 4 cut(s) 140, 236, 251, 491
BtrI CACGTC 1 cut(s) 846
BtsCI GGATG 1 cut(s) 915
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 3 cut(s) 77, 327, 907
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 3 cut(s) 604, 637, 682
CfoI GCGC 3 cut(s) 43, 145, 188
Cfr13I GGNCC 1 cut(s) 873
CseI GACGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 359
CviAII CATG 2 cut(s) 414, 870
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 2 cut(s) 80, 486
DinI GGCGCC 1 cut(s) 42
DpnI GATC 2 cut(s) 554, 906
DpnII GATC 2 cut(s) 552, 904
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 284, 437, 755
EarI CTCTTC 3 cut(s) 284, 437, 755
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 3 cut(s) 111, 135, 231
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 3 cut(s) 167, 293, 660
Eco81I CCTNAGG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 32
EcoNI CCTNNNNNAGG 2 cut(s) 600, 678
EcoRII CCWGG 2 cut(s) 313, 694
EcoT14I CCWWGG 3 cut(s) 111, 135, 231
EcoT38I GRGCYC 1 cut(s) 34
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
ErhI CCWWGG 3 cut(s) 111, 135, 231
FaeI CATG 2 cut(s) 417, 873
FaiI YATR 8 cut(s) 74, 411, 415, 465, 467, 478, 871, 896
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 2 cut(s) 463, 798
FatI CATG 2 cut(s) 413, 869
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 1 cut(s) 904
FblI GTMKAC 2 cut(s) 62, 410
Fnu4HI GCNGC 4 cut(s) 118, 141, 237, 240
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 4 cut(s) 118, 141, 237, 240
FspBI CTAG 1 cut(s) 840
GlaI GCGC 3 cut(s) 42, 144, 187
GluI GCNGC 4 cut(s) 118, 141, 237, 240
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 4 cut(s) 140, 236, 251, 491
HapII CCGG 2 cut(s) 96, 433
HgaI GACGC 1 cut(s) 48
HhaI GCGC 3 cut(s) 43, 145, 188
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 417, 873
Hin6I GCGC 3 cut(s) 41, 143, 186
HinP1I GCGC 3 cut(s) 41, 143, 186
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 4 cut(s) 451, 505, 613, 691
HpaII CCGG 2 cut(s) 96, 433
HphI GGTGA 3 cut(s) 575, 656, 736
Hpy166II GTNNAC 6 cut(s) 63, 180, 228, 411, 428, 625
Hpy188I TCNGA 1 cut(s) 920
Hpy188III TCNNGA 1 cut(s) 393
Hpy8I GTNNAC 6 cut(s) 63, 180, 228, 411, 428, 625
Hpy99I CGWCG 2 cut(s) 366, 369
HpyAV CCTTC 7 cut(s) 213, 282, 606, 635, 684, 759, 877
HpyCH4III ACNGT 2 cut(s) 304, 331
HpyCH4IV ACGT 2 cut(s) 802, 845
HpyCH4V TGCA 7 cut(s) 163, 215, 228, 327, 620, 635, 713
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 140, 248, 324, 599, 677, 719
HpyF3I CTNAG 2 cut(s) 80, 486
HpySE526I ACGT 2 cut(s) 802, 845
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 417, 873
HspAI GCGC 3 cut(s) 41, 143, 186
KasI GGCGCC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 904
Kzo9I GATC 2 cut(s) 552, 904
LmnI GCTCC 3 cut(s) 29, 598, 676
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 1 cut(s) 840
MaeII ACGT 2 cut(s) 802, 845
MalI GATC 2 cut(s) 554, 906
MboI GATC 2 cut(s) 552, 904
MboII GAAGA 8 cut(s) 98, 271, 299, 388, 454, 739, 769, 772
MhlI GDGCHC 4 cut(s) 34, 159, 230, 264
MluCI AATT 4 cut(s) 336, 385, 735, 775
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 445
MroXI GAANNNNTTC 2 cut(s) 303, 775
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 2 cut(s) 257, 435
MspA1I CMGCKG 3 cut(s) 239, 722, 797
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 2 cut(s) 96, 433
MspR9I CCNGG 3 cut(s) 97, 315, 696
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 2 cut(s) 315, 696
MvnI CGCG 3 cut(s) 59, 143, 188
MwoI GCNNNNNNNGC 7 cut(s) 38, 140, 248, 324, 599, 677, 719
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 465
NdeII GATC 2 cut(s) 552, 904
NlaIII CATG 2 cut(s) 417, 873
NlaIV GGNNCC 1 cut(s) 42
NspI RCATGY 1 cut(s) 417
NspV TTCGAA 2 cut(s) 334, 503
PaeR7I CTCGAG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 551
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 2 cut(s) 303, 775
PfeI GAWTC 3 cut(s) 505, 613, 691
PkrI GCNGC 4 cut(s) 119, 142, 238, 241
PleI GAGTC 1 cut(s) 445
PluTI GGCGCC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 313, 694
PspGI CCWGG 2 cut(s) 313, 694
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 873
PspXI VCTCGAGB 1 cut(s) 152
PstI CTGCAG 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 2 cut(s) 257, 435
SacI GAGCTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 4 cut(s) 118, 141, 237, 240
Sau3AI GATC 2 cut(s) 552, 904
Sau96I GGNCC 1 cut(s) 873
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 3 cut(s) 97, 315, 696
SduI GDGCHC 4 cut(s) 34, 159, 230, 264
SfcI CTRYAG 1 cut(s) 618
SfoI GGCGCC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 152
SfuI TTCGAA 2 cut(s) 334, 503
SinI GGWCC 1 cut(s) 873
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 257, 435
SmlI CTYRAG 2 cut(s) 152, 515
SmoI CTYRAG 2 cut(s) 152, 515
Sse9I AATT 4 cut(s) 336, 385, 735, 775
SsiI CCGC 7 cut(s) 117, 141, 188, 237, 581, 600, 722
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 1 cut(s) 840
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 3 cut(s) 95, 313, 694
StyI CCWWGG 3 cut(s) 111, 135, 231
TaaI ACNGT 2 cut(s) 304, 331
TaiI ACGT 2 cut(s) 805, 848
TaqI TCGA 4 cut(s) 153, 334, 394, 503
TasI AATT 4 cut(s) 336, 385, 735, 775
TauI GCSGC 3 cut(s) 120, 143, 239
TfiI GAWTC 3 cut(s) 505, 613, 691
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 3 cut(s) 84, 334, 907
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 482, 678
TspRI CASTG 3 cut(s) 84, 334, 907
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 873
XagI CCTNNNNNAGG 2 cut(s) 600, 678
XceI RCATGY 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 2 cut(s) 62, 410
XmnI GAANNNNTTC 2 cut(s) 303, 775
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.