RchiOBHm_Chr7g0197731

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013886
Physical Location & Seq
Reverse (-)
15585170 .. 15587309
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17688

Sequence Viewer

Length: 909 bp
ATGAGCAGGAGAGGAGGAGCCAAGAGAGCATCAAACACAACATTTGGGTCAAACAATCCGATTTCACTGAGAGAAGACAAAAACCAAAGCAAGGGAGGCTCCACCAACCCCAAGGCTGCATTGAAGCTCGAGCACTTGCAGAGGCTAGCTTTATGGACCAGTGGGGAAGCTTCTATTCCTTCTTTGGGGGCCTTCTTTGGGCAGAAGTTAGCTTCTACTCAAGAGGGTCTGGATGTGCCCCCTGACCCTTCTCTGATTTCTTGCCAGAGATGTGAAACGATTCTTCAGCCTGGCTTCAACTGCACTATTCGCATTGAAAAAAATAGAGCAAAGGCACGACGAAGAAGTAAGAAACCCGCTAATTTCACTTTCACTCAGAACAATGTAGTGTATACATGTCACTTTTGTTCTGAACGGAATGTGAAGAGAGGGACTTCACGCGGACATATGAAAGCGATATGCCCCCCAAAGATCAAAAAAGCTTCAAATTTGAAACCTGCTAAATCCATTTCTCAGAAGTTTGCCACCCCCAAGAAGAGCACTGCTGGTGAGGATAACGTTAGTAAATTGAAATCCGGAACTCCAACTGTGGAGGAAGAGATTCCTAATGTGGATAAGTTCATCACTTCTTCAACAAAAGATGAAGAGACTCCTACTGCGGATAGCCCCACAACTCCAATGGTGAAACCCGCAATCACGTTGTTGGACTCAAAGAGAAAAAAGAGAAACAAATCGGCGTCCAAGAAACGATCTGAACCCGAAAACAGCCCCGCCCCAGCAGACGCAGAGAACTCTTTCAGCACGACAAACAAACGGAGGAGAAAATCATGGACTAGTTTAAAGGAACTCGCTGAAAGAAGTGAGCAGAAGAAAAACATCAGTGATCTGTCAATCCCTTTCTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

302

Amino Acids

33.34

Weight (kDa)

10.12

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 43 - 137 2.3e-13 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 392
AccII CGCG 1 cut(s) 441
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 5 cut(s) 357, 441, 659, 690, 771
AclI AACGTT 1 cut(s) 558
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 737
AfiI CCNNNNNNNGG 3 cut(s) 91, 185, 198
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 7 cut(s) 124, 298, 317, 486, 493, 571, 633
AhlI ACTAGT 1 cut(s) 833
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 127, 149, 170, 212, 482
AluI AGCT 5 cut(s) 127, 149, 170, 212, 482
Alw21I GWGCWC 2 cut(s) 135, 542
Alw26I GTCTC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 3 cut(s) 279, 600, 794
AspS9I GGNCC 2 cut(s) 156, 189
AsuHPI GGTGA 2 cut(s) 560, 694
AsuNHI GCTAGC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 135, 542
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 641
BcuI ACTAGT 1 cut(s) 833
BfaI CTAG 2 cut(s) 146, 834
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 156, 189
BmiI GGNNCC 3 cut(s) 19, 100, 190
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 185, 198
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 3 cut(s) 91, 185, 198
BseMII CTCAG 3 cut(s) 59, 389, 527
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 3 cut(s) 27, 30, 832
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 775
BsgI GTGCAG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 135, 542
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 91, 185, 198
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 135, 240, 542
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 471, 749, 883
BspACI CCGC 5 cut(s) 357, 441, 659, 690, 771
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 3 cut(s) 60, 388, 526
BspEI TCCGGA 1 cut(s) 575
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 19, 100, 190
BspMI ACCTGC 1 cut(s) 505
BspOI GCTAGC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 471, 749, 883
BssNAI GTATAC 1 cut(s) 393
BssNI GRCGYC 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 4 cut(s) 419, 530, 591, 639
BstACI GRCGYC 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 68, 375, 513
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 441
BstKTI GATC 3 cut(s) 474, 752, 886
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 3 cut(s) 471, 749, 883
BstMWI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 4 cut(s) 65, 166, 540, 886
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 156, 189
CseI GACGC 2 cut(s) 726, 791
CviAII CATG 2 cut(s) 396, 828
DdeI CTNAG 3 cut(s) 68, 375, 513
DpnI GATC 3 cut(s) 473, 751, 885
DpnII GATC 3 cut(s) 471, 749, 883
DraI TTTAAA 1 cut(s) 840
Eam1104I CTCTTC 4 cut(s) 419, 530, 591, 639
EarI CTCTTC 4 cut(s) 419, 530, 591, 639
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 399, 831
FaiI YATR 8 cut(s) 154, 393, 397, 447, 449, 460, 829, 905
FaqI GGGAC 1 cut(s) 445
FatI CATG 2 cut(s) 395, 827
FauI CCCGC 3 cut(s) 364, 697, 778
FauNDI CATATG 1 cut(s) 447
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 146, 834
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 779
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 576
HgaI GACGC 2 cut(s) 726, 791
Hin1I GRCGYC 1 cut(s) 737
Hin1II CATG 2 cut(s) 399, 831
HindIII AAGCTT 2 cut(s) 168, 480
HinfI GANTC 4 cut(s) 280, 601, 649, 707
HpaII CCGG 1 cut(s) 576
HphI GGTGA 2 cut(s) 560, 694
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 6 cut(s) 60, 255, 378, 412, 516, 754
Hpy188III TCNNGA 3 cut(s) 221, 230, 576
Hpy8I GTNNAC 1 cut(s) 393
Hpy99I CGWCG 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 189, 202, 258
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 2 cut(s) 558, 698
HpyCH4V TGCA 3 cut(s) 119, 139, 303
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
HpyF3I CTNAG 3 cut(s) 68, 375, 513
HpySE526I ACGT 2 cut(s) 558, 698
Hsp92I GRCGYC 1 cut(s) 737
Hsp92II CATG 2 cut(s) 399, 831
Kpn2I TCCGGA 1 cut(s) 575
Kzo9I GATC 3 cut(s) 471, 749, 883
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 2 cut(s) 17, 104
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 38
MaeI CTAG 2 cut(s) 146, 834
MaeII ACGT 2 cut(s) 558, 698
MaeIII GTNAC 1 cut(s) 398
MalI GATC 3 cut(s) 473, 751, 885
MboI GATC 3 cut(s) 471, 749, 883
MboII GAAGA 9 cut(s) 86, 275, 354, 436, 547, 608, 621, 656, 880
MhlI GDGCHC 3 cut(s) 135, 240, 542
MluCI AATT 3 cut(s) 361, 487, 566
MlyI GAGTC 2 cut(s) 643, 701
MmeI TCCRAC 2 cut(s) 608, 684
MnlI CCTC 9 cut(s) 5, 8, 89, 135, 217, 422, 544, 586, 810
MroI TCCGGA 1 cut(s) 575
MroXI GAANNNNTTC 3 cut(s) 279, 600, 794
MseI TTAA 1 cut(s) 839
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
NdeI CATATG 1 cut(s) 447
NdeII GATC 3 cut(s) 471, 749, 883
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 399, 831
NlaIV GGNNCC 3 cut(s) 19, 100, 190
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 128
PciI ACATGT 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 530
PdmI GAANNNNTTC 3 cut(s) 279, 600, 794
PfeI GAWTC 2 cut(s) 280, 601
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 643, 701
PpsI GAGTC 2 cut(s) 643, 701
PscI ACATGT 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 775
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 19, 100, 190
PspPI GGNCC 2 cut(s) 156, 189
PspXI VCTCGAGB 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 1 cut(s) 839
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 471, 749, 883
Sau96I GGNCC 2 cut(s) 156, 189
SchI GAGTC 2 cut(s) 643, 701
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 135, 240, 542
SetI ASST 8 cut(s) 129, 151, 172, 214, 484, 499, 561, 701
SfaNI GCATC 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 219
SmoI CTYRAG 2 cut(s) 128, 219
SpeI ACTAGT 1 cut(s) 833
Sse9I AATT 3 cut(s) 361, 487, 566
SsiI CCGC 5 cut(s) 357, 441, 659, 690, 771
SspMI CTAG 2 cut(s) 146, 834
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 2 cut(s) 561, 701
TaqI TCGA 1 cut(s) 129
TasI AATT 3 cut(s) 361, 487, 566
TfiI GAWTC 2 cut(s) 280, 601
Tru1I TTAA 1 cut(s) 839
Tru9I TTAA 1 cut(s) 839
TscAI CASTG 4 cut(s) 72, 166, 547, 886
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 3 cut(s) 464, 610, 657
TspGWI ACGGA 2 cut(s) 430, 829
TspRI CASTG 4 cut(s) 72, 166, 547, 886
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 392
XmnI GAANNNNTTC 3 cut(s) 279, 600, 794
XspI CTAG 2 cut(s) 146, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.