RLG00000003916

RNAse P Rpr2/Rpp21/SNM1 subunit domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013886
Physical Location & Seq
Forward (+)
54268537 .. 54270425
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003916

Sequence Viewer

Length: 912 bp
ATGAGCAAGAGAGGAGGAGCCAAGAGAGCATCAAACACAACATTTGGGTCAAACAATCCAATTTCACTGAGAGAGGATAAAAACCAAAGCAAGGGAGGCTCCACCAACCCCAAGGCTGCATTGAAGCTCGAGCACTTGCAGAGGCTAGCTTTATGGACCAGTGGGGAAGCTTCTATTCCTTCTTTGGGGGCCTTCTTTGGGCAGAAGTTAGCTTCTACTCGAGAGGGTCTGGATGTGCCCCCTGACCCTTCTCTGATTTCTTGCCAGAGATGTGAAACGATTCTTCAGCCTGGCTTCAACTGCACTATTCGCATTGAAAAAAATAGAGCAAAGCCACGACGAAGAAGTAAGAAGCCCGCTAATTTCACTTTCACTCAGAACAATGTAGTGTATACATGTCACTTCTGTTCTGAACGGAATGTGAAGAGAGGAACTTCACGCGGACATATTAAAGCGATATGCCCCCCAAAGATAAAAAAAGCTTCAAATTTGAAACCTGCTAAATCCATTTCTCAGAAGTTTGCCACCCCAAAGAAGAGCACTGCTGGTGAGGATAACGTTAGTAAATTGAAAACCGGAACTCCAACTGTGGAGGAAGAGATTCCTACTGTGGATAAGTTCGTCACTTCTTCAACAAAAGATGAAGAGATTCCTACTGCGGATAGTCCCACAACTCCAATAGTGAAACCCGCAATTATGTTGTTGGACTCAAAGAGAAAAAAGAGAAACAAATCGGCGTCCAAGAAACGATCTGAACCCGAAAACAGTCCCCCTGCGCCAGCAGATGCAGAGAACTCTTTCAGCACGACAAACAAACGGAGGAGAAAATCATGGACTAGTTTAAAGGAACTCGCTGAAAGAAGTGAGCAGAAGAAAAACATCAGTGATCTGTCAACCCCTTTCTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rpr2

Protein Analysis

304

Amino Acids

33.44

Weight (kDa)

10.14

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpr2 PF04032 43 - 137 6.2e-13 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013886)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41270
fragaria_vesca FvH4_5g02380
malus_domestica MD07G1059600.v1.1 MD14G1104200.v1.1
prunus_persica Prupe.5G099900_v2.0.a1
pyrus_communis pycom07g07940 pycom14g10040
rosa_chinensis RchiOBHm_Chr7g0197731
rosa_laevigata RLG00000003916 RLG00000015448
rosa_rugosa Rorug07G0042600
rosa_samantha Rh7AG167000 Rh7BG169100 Rh7CG175500 Rh7CG175600 Rh7DG168800
rosa_wichuraiana Rw7G014530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 392
AccII CGCG 1 cut(s) 441
AciI CCGC 4 cut(s) 357, 441, 659, 690
AclI AACGTT 1 cut(s) 558
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 737
AfiI CCNNNNNNNGG 3 cut(s) 91, 185, 198
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 7 cut(s) 124, 298, 317, 486, 493, 571, 633
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 127, 149, 170, 212, 482
AluI AGCT 5 cut(s) 127, 149, 170, 212, 482
Alw21I GWGCWC 2 cut(s) 135, 542
Ama87I CYCGRG 2 cut(s) 128, 219
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 4 cut(s) 279, 600, 648, 797
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 2 cut(s) 156, 189
AsuHPI GGTGA 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 145
AvaI CYCGRG 2 cut(s) 128, 219
AvaII GGWCC 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 240
Bbv12I GWGCWC 2 cut(s) 135, 542
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 291
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 2 cut(s) 146, 837
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 2 cut(s) 128, 219
BmgT120I GGNCC 2 cut(s) 156, 189
BmiI GGNNCC 3 cut(s) 19, 100, 190
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 38, 775
BmtI GCTAGC 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 575
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 185, 198
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 3 cut(s) 91, 185, 198
BseMII CTCAG 3 cut(s) 59, 389, 527
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 3 cut(s) 27, 30, 835
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 135, 542
BsiHKCI CYCGRG 2 cut(s) 128, 219
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 2 cut(s) 651, 753
BslI CCNNNNNNNGG 3 cut(s) 91, 185, 198
BsmFI GGGAC 2 cut(s) 651, 753
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 128, 219
Bsp1286I GDGCHC 3 cut(s) 135, 240, 542
Bsp143I GATC 2 cut(s) 749, 886
BspACI CCGC 4 cut(s) 357, 441, 659, 690
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 3 cut(s) 60, 388, 526
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 19, 100, 190
BspMI ACCTGC 1 cut(s) 505
BspOI GCTAGC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 749, 886
BssNAI GTATAC 1 cut(s) 393
BssNI GRCGYC 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 589, 610, 767
Bst6I CTCTTC 4 cut(s) 419, 530, 591, 639
BstACI GRCGYC 1 cut(s) 737
BstC8I GCNNGC 3 cut(s) 147, 357, 780
BstDEI CTNAG 3 cut(s) 68, 375, 513
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 2 cut(s) 752, 889
BstMBI GATC 2 cut(s) 749, 886
BstMWI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 103
BstZ17I GTATAC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 4 cut(s) 65, 166, 540, 889
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 147, 357, 780
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 2 cut(s) 156, 189
CseI GACGC 1 cut(s) 726
CviAII CATG 2 cut(s) 396, 831
DdeI CTNAG 3 cut(s) 68, 375, 513
DpnI GATC 2 cut(s) 751, 888
DpnII GATC 2 cut(s) 749, 886
DraI TTTAAA 1 cut(s) 843
Eam1104I CTCTTC 4 cut(s) 419, 530, 591, 639
EarI CTCTTC 4 cut(s) 419, 530, 591, 639
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 2 cut(s) 128, 219
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 399, 834
FaiI YATR 8 cut(s) 154, 393, 397, 447, 460, 698, 832, 908
FaqI GGGAC 2 cut(s) 651, 753
FatI CATG 2 cut(s) 395, 830
FauI CCCGC 2 cut(s) 364, 697
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 146, 837
GlaI GCGC 1 cut(s) 777
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 576
HgaI GACGC 1 cut(s) 726
HhaI GCGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 737
Hin1II CATG 2 cut(s) 399, 834
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 2 cut(s) 168, 480
HinfI GANTC 4 cut(s) 280, 601, 649, 707
HpaII CCGG 1 cut(s) 576
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 2 cut(s) 393, 894
Hpy188I TCNGA 5 cut(s) 255, 378, 412, 516, 754
Hpy188III TCNNGA 2 cut(s) 221, 230
Hpy8I GTNNAC 2 cut(s) 393, 894
Hpy99I CGWCG 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 189, 202, 258
HpyCH4III ACNGT 3 cut(s) 589, 610, 767
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 4 cut(s) 119, 139, 303, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
HpyF3I CTNAG 3 cut(s) 68, 375, 513
HpySE526I ACGT 1 cut(s) 558
Hsp92I GRCGYC 1 cut(s) 737
Hsp92II CATG 2 cut(s) 399, 834
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 2 cut(s) 749, 886
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 2 cut(s) 17, 104
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 38, 775
MaeI CTAG 2 cut(s) 146, 837
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 2 cut(s) 398, 622
MalI GATC 2 cut(s) 751, 888
MboI GATC 2 cut(s) 749, 886
MboII GAAGA 8 cut(s) 275, 354, 436, 547, 608, 621, 656, 883
MhlI GDGCHC 3 cut(s) 135, 240, 542
MluCI AATT 5 cut(s) 60, 361, 487, 566, 693
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 2 cut(s) 608, 684
MroXI GAANNNNTTC 4 cut(s) 279, 600, 648, 797
MseI TTAA 2 cut(s) 450, 842
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 4 cut(s) 26, 96, 300, 309
NdeII GATC 2 cut(s) 749, 886
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 399, 834
NlaIV GGNNCC 3 cut(s) 19, 100, 190
NmuCI GTSAC 2 cut(s) 398, 622
NspI RCATGY 1 cut(s) 399
PaeR7I CTCGAG 2 cut(s) 128, 219
PciI ACATGT 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 530
PdmI GAANNNNTTC 4 cut(s) 279, 600, 648, 797
PfeI GAWTC 3 cut(s) 280, 601, 649
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PscI ACATGT 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 19, 100, 190
PspPI GGNCC 2 cut(s) 156, 189
PspXI VCTCGAGB 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 2 cut(s) 450, 842
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 749, 886
Sau96I GGNCC 2 cut(s) 156, 189
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 135, 240, 542
SetI ASST 7 cut(s) 129, 151, 172, 214, 484, 499, 561
SfaNI GCATC 2 cut(s) 38, 775
Sfr274I CTCGAG 2 cut(s) 128, 219
SinI GGWCC 1 cut(s) 156
SlaI CTCGAG 2 cut(s) 128, 219
SmlI CTYRAG 2 cut(s) 128, 219
SmoI CTYRAG 2 cut(s) 128, 219
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 5 cut(s) 60, 361, 487, 566, 693
SsiI CCGC 4 cut(s) 357, 441, 659, 690
SspMI CTAG 2 cut(s) 146, 837
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 589, 610, 767
TaiI ACGT 1 cut(s) 561
TaqI TCGA 2 cut(s) 129, 220
TasI AATT 5 cut(s) 60, 361, 487, 566, 693
TfiI GAWTC 3 cut(s) 280, 601, 649
Tru1I TTAA 2 cut(s) 450, 842
Tru9I TTAA 2 cut(s) 450, 842
TscAI CASTG 4 cut(s) 72, 166, 547, 889
TseFI GTSAC 2 cut(s) 398, 622
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 398, 622
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 2 cut(s) 430, 832
TspRI CASTG 4 cut(s) 72, 166, 547, 889
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 399
XhoI CTCGAG 2 cut(s) 128, 219
XmiI GTMKAC 1 cut(s) 392
XmnI GAANNNNTTC 4 cut(s) 279, 600, 648, 797
XspI CTAG 2 cut(s) 146, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.